Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28214 Brassica carinata HOM05D006634 ORTHO05D008282 6.0e-39 163.7 82 100.0
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 2.1e-31 138.7 86 83.7
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 3.5e-31 137.9 86 82.6
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 4.6e-31 137.5 86 82.6
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 6.0e-31 137.1 86 82.6
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 1.0e-30 136.3 86 82.6
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 1.3e-30 136.0 86 81.4
BolC4t27285H Brassica oleracea HOM05D006634 ORTHO05D008282 1.7e-30 135.6 82 84.1
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 2.3e-30 135.2 86 81.4
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 3.0e-30 134.8 86 82.6
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 3.9e-30 134.4 86 81.4
Thhalv10017488m.g Eutrema salsugineum HOM05D006634 ORTHO05D008282 1.1e-29 132.9 87 80.5
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 1.9e-29 132.1 87 79.3
BraA04t17721Z Brassica rapa HOM05D006634 ORTHO05D008282 2.8e-28 128.3 82 79.3
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 1.1e-27 126.3 86 76.7
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 9.9e-26 119.8 86 70.9
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 1.8e-22 109.0 82 68.3
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 3.0e-22 108.2 85 69.4
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 1.9e-21 105.5 82 67.1
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 7.4e-21 103.6 86 62.8
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 9.6e-21 103.2 82 67.1
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 1.6e-20 102.4 86 64.0
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 2.1e-20 102.1 86 62.8
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 2.1e-20 102.1 86 61.6
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 2.8e-20 101.7 86 64.0
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 4.8e-20 100.9 86 61.6
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 6.2e-20 100.5 82 64.6
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 8.1e-20 100.1 86 61.6
Gohir.D08G215200 Gossypium hirsutum HOM05D006634 ORTHO05D008282 8.1e-20 100.1 82 64.6
Gorai.004G228800 Gossypium raimondii HOM05D006634 ORTHO05D008282 8.1e-20 100.1 82 64.6
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 1.1e-19 99.8 86 60.5
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 1.4e-19 99.4 86 62.8
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 1.8e-19 99.0 80 62.5
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 2.4e-19 98.6 86 58.1
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 3.1e-19 98.2 82 64.6
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 3.1e-19 98.2 81 64.2
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 4.0e-19 97.8 86 60.5
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 4.0e-19 97.8 86 60.5
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 5.3e-19 97.4 82 63.4
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 6.9e-19 97.1 82 63.4
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 9.0e-19 96.7 86 59.3
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 58.6
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 58.6
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 58.6
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 58.6
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 58.6
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 1.2e-18 96.3 86 58.1
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 1.2e-18 96.3 86 58.1
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 78 62.8
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 1.2e-18 96.3 86 58.1
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 1.5e-18 95.9 84 60.7
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 1.5e-18 95.9 82 62.2
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 1.5e-18 95.9 85 62.4
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 2.0e-18 95.5 91 60.4
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 2.0e-18 95.5 84 58.3
Eucgr.B02497 Eucalyptus grandis HOM05D006634 ORTHO05D008282 3.4e-18 94.7 86 58.1
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 3.4e-18 94.7 84 59.5
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 4.5e-18 94.4 82 61.0
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 5.8e-18 94.0 86 58.1
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 1.7e-17 92.4 82 57.3
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 1.7e-17 92.4 80 61.2
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 2.2e-17 92.0 82 57.3
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 2.9e-17 91.7 87 56.3
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 3.8e-17 91.3 86 57.0
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 3.8e-17 91.3 84 57.1
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 4.9e-17 90.9 83 59.0
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 4.9e-17 90.9 87 59.8
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 4.9e-17 90.9 86 57.0
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 8.4e-17 90.1 82 57.3
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 1.1e-16 89.7 87 58.6
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 2.5e-16 88.6 80 58.8
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 3.2e-16 88.2 74 63.5
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 4.2e-16 87.8 82 54.9
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 1.6e-15 85.9 86 59.3
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 3.5e-15 84.7 85 56.5
unitig_21.g20301 Utricularia gibba HOM05D006634 ORTHO05D008282 3.5e-15 84.7 84 53.6
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 4.6e-15 84.3 86 51.2
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 7.9e-15 83.6 87 55.2
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 1.3e-14 82.8 86 53.5
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 1.3e-14 82.8 86 53.5
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 3.0e-14 81.6 75 58.7
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 3.0e-14 81.6 88 50.0
A04p21560 Brassica napus HOM05D006634 ORTHO05D008282 3.9e-14 81.3 42 88.1
HanXRQChr02g0031651 Helianthus annuus HOM05D006634 ORTHO05D008282 3.9e-14 81.3 83 55.4
Lsat_1_v5_gn_2_98520 Lactuca sativa HOM05D006634 ORTHO05D008282 3.9e-14 81.3 82 52.4
ECA248G3376 Erigeron canadensis HOM05D006634 ORTHO05D008282 5.1e-14 80.9 83 50.6
Actinidia03728 Actinidia chinensis HOM05D006634 ORTHO05D008282 6.7e-14 80.5 83 54.2
DCAR_018812 Daucus carota HOM05D006634 ORTHO05D008282 2.5e-13 78.6 79 50.6
FAN25G2760 Fragaria x ananassa HOM05D006634 ORTHO05D008282 5.7e-13 77.4 85 47.1
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 7.4e-13 77.0 80 52.5
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 2.1e-12 75.5 88 48.9
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 2.8e-12 75.1 86 51.2
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 4.8e-12 74.3 86 51.2
Aqoxy2G01632 Aquilegia oxysepala HOM05D006634 ORTHO05D008282 6.2e-12 73.9 85 51.8
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 6.2e-12 73.9 86 52.3
FAN16G1798 Fragaria x ananassa HOM05D006634 ORTHO05D008282 8.2e-12 73.6 79 49.4
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 1.1e-11 73.2 86 52.3
Zm00001eb221580 Zea mays HOM05D006634 ORTHO05D008282 4.5e-10 67.8 84 46.4
Actinidia25419 Actinidia chinensis HOM05D006634 ORTHO05D008282 7.6e-10 67.0 74 51.4
Sed0015282 Sechium edule HOM05D006634 ORTHO05D008282 5.0e-09 64.3 82 47.6
Zm00001eb045570 Zea mays HOM05D006634 ORTHO05D008282 1.1e-08 63.2 84 44.0
Os10g0481400 Oryza sativa ssp. japonica HOM05D006634 ORTHO05D008282 3.2e-08 61.6 90 44.4
Cc01_g11130 Coffea canephora HOM05D006634 ORTHO05D008282 7.1e-08 60.5 66 45.5
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 9.3e-08 60.1 56 60.7
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 3.5e-07 58.2 174 28.2
SalBow3G3864 Salvia bowleyana HOM05D006634 ORTHO05D008282 6.1e-07 57.4 85 43.5


User provided reference genes

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