Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 5.3e-57 224.2 116 100.0
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.8e-52 209.1 116 91.4
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.8e-52 209.1 116 91.4
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 2.5e-51 205.3 116 91.4
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 2.5e-51 205.3 116 91.4
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 3.3e-51 204.9 116 90.5
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 2.5e-46 188.7 116 83.6
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 2.1e-45 185.7 116 81.9
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 2.1e-45 185.7 116 81.9
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 3.6e-45 184.9 116 81.9
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 4.6e-45 184.5 119 83.2
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.5e-43 179.5 116 80.2
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 5.7e-43 177.6 116 77.6
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 6.3e-42 174.1 116 75.0
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.8e-41 172.6 117 76.9
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 3.1e-41 171.8 117 79.5
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 2.0e-40 169.1 111 74.8
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.7e-34 149.4 113 69.9
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.5e-22 109.0 111 51.4
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 1.2e-21 106.7 115 50.4
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 4.7e-21 104.8 115 48.7
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 4.0e-20 101.7 115 49.6
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 6.8e-20 100.9 115 49.6
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 2.6e-19 99.0 105 49.5
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 9.7e-19 97.1 107 50.5
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.3e-18 96.7 108 52.8
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 3.7e-18 95.1 104 51.9
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 6.3e-18 94.4 115 44.3
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 6.3e-18 94.4 109 51.4
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.3e-18 94.0 116 45.7
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 8.3e-18 94.0 106 52.8
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.1e-17 93.6 115 45.2
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.4e-17 93.2 105 48.6
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.4e-17 93.2 115 47.8
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 1.4e-17 93.2 116 48.3
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.4e-17 93.2 115 47.8
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.8e-17 92.8 115 49.6
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 2.4e-17 92.4 106 46.2
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.1e-17 92.0 113 49.6
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.1e-17 92.0 115 47.0
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 3.1e-17 92.0 115 45.2
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 3.1e-17 92.0 117 46.2
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 3.1e-17 92.0 115 45.2
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 4.1e-17 91.7 115 47.8
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 4.1e-17 91.7 114 49.1
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.1e-17 91.7 114 49.1
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.1e-17 91.7 116 44.0
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 5.3e-17 91.3 119 49.6
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.3e-17 91.3 111 48.6
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.3e-17 91.3 114 50.0
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 7.0e-17 90.9 115 46.1
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.0e-17 90.9 114 49.1
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 9.1e-17 90.5 107 47.7
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.6e-16 89.7 106 50.9
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.0e-16 89.4 110 46.4
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.0e-16 89.4 109 48.6
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 2.7e-16 89.0 106 47.2
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.7e-16 89.0 115 46.1
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 4.5e-16 88.2 107 44.9
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 4.5e-16 88.2 110 48.2
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 5.9e-16 87.8 115 47.0
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 7.7e-16 87.4 104 46.2
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 7.7e-16 87.4 106 48.1
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 1.0e-15 87.0 109 50.5
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.3e-15 86.7 109 47.7
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 1.7e-15 86.3 111 45.9
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.7e-15 86.3 107 45.8
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.2e-15 85.9 118 44.9
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.2e-15 85.9 116 44.0
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.9e-15 85.5 106 45.3
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 5.0e-15 84.7 98 52.0
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 8.5e-15 84.0 115 43.5
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 8.5e-15 84.0 107 48.6
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.1e-14 83.6 108 46.3
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.1e-14 83.6 115 45.2
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.1e-14 83.6 107 47.7
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 1.9e-14 82.8 115 43.5
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.5e-14 82.4 109 45.0
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 5.5e-14 81.3 104 49.0
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 5.5e-14 81.3 105 41.9
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 5.5e-14 81.3 121 44.6
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 9.4e-14 80.5 115 41.7
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.6e-13 79.7 107 44.9
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.6e-13 79.7 115 43.5
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.1e-13 79.3 114 43.9
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 2.1e-13 79.3 117 39.3
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.7e-13 79.0 113 45.1
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.6e-13 78.6 101 43.6
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 4.7e-13 78.2 107 43.9
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 4.7e-13 78.2 121 43.8
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 4.7e-13 78.2 113 38.9
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 6.1e-13 77.8 115 41.7
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.8e-12 76.3 107 43.0
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.3e-12 75.9 117 44.4
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 5.2e-12 74.7 106 42.5
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 6.8e-12 74.3 113 42.5
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 8.8e-12 73.9 111 44.1
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.5e-11 73.2 108 42.6
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.0e-11 72.8 108 44.4
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.0e-11 72.8 116 43.1
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 4.4e-11 71.6 103 40.8
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 5.7e-11 71.2 115 42.6
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.3e-10 70.1 109 44.0
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.3e-10 70.1 115 37.4
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.8e-10 68.9 115 41.7
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 4.8e-10 68.2 99 45.5
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 6.3e-10 67.8 108 41.7
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 6.3e-10 67.8 117 38.5
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 6.3e-10 67.8 117 38.5
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.1e-09 67.0 109 42.2
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.1e-09 67.0 103 39.8
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.8e-09 66.2 120 39.2
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.4e-09 65.9 107 41.1
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.0e-08 62.8 114 41.2
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.5e-06 56.6 119 35.3
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.5e-06 56.6 119 35.3
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 5.5e-06 54.7 109 38.5
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 5.5e-06 54.7 109 35.8
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 9.5e-06 53.9 117 38.5


User provided reference genes

Program Settings