Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 1.2e-172 609.8 321 100.0
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 3.7e-161 571.6 324 92.3
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 3.7e-161 571.6 324 92.3
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 3.2e-160 568.5 326 93.3
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 7.0e-160 567.4 326 93.3
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 6.0e-159 564.3 327 92.7
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 8.1e-156 553.9 321 88.5
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 2.0e-154 549.3 321 87.5
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 3.4e-154 548.5 321 86.3
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 7.1e-152 540.8 321 85.4
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 7.8e-151 537.3 321 86.3
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.3e-145 520.0 321 83.2
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.0e-142 510.4 322 78.9
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 1.3e-134 483.4 325 75.1
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 1.8e-131 473.0 324 73.8
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 2.4e-128 462.6 332 72.0
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 4.2e-128 461.8 332 71.7
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.6e-127 459.9 332 71.4
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 3.5e-127 458.8 332 71.1
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 6.0e-127 458.0 322 75.5
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 7.9e-127 457.6 322 76.1
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 5.1e-126 454.9 332 73.2
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 5.1e-126 454.9 323 72.8
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 5.6e-125 451.4 321 71.0
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 9.6e-125 450.7 324 71.6
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 1.6e-124 449.9 323 70.9
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.8e-124 449.1 330 68.8
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 3.7e-124 448.7 322 75.2
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 2.4e-123 446.0 324 71.3
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 2.4e-123 446.0 329 72.6
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 5.3e-123 444.9 324 71.6
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 5.3e-123 444.9 322 74.2
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 1.5e-122 443.4 326 72.7
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.5e-122 443.4 328 68.3
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 2.0e-122 443.0 322 71.4
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 2.0e-122 443.0 322 73.3
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 3.4e-122 442.2 330 68.2
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 4.5e-122 441.8 326 70.6
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 5.8e-122 441.4 326 67.8
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.6e-122 441.0 322 71.4
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.7e-121 439.9 324 71.0
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 3.8e-121 438.7 322 71.1
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 6.4e-121 438.0 320 67.5
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 8.4e-121 437.6 329 70.8
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.1e-120 437.2 327 68.2
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 1.1e-120 437.2 325 69.8
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.4e-120 436.8 327 70.6
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 2.5e-120 436.0 335 68.1
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 3.2e-120 435.6 320 67.5
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 3.2e-120 435.6 330 67.0
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 4.2e-120 435.3 331 68.3
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 5.5e-120 434.9 325 67.1
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 7.1e-120 434.5 333 67.9
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 9.3e-120 434.1 331 65.9
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 1.6e-119 433.3 323 67.2
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 2.7e-119 432.6 328 66.5
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 3.5e-119 432.2 322 68.3
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 4.6e-119 431.8 321 65.4
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 7.9e-119 431.0 323 70.3
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 1.0e-118 430.6 325 66.8
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.3e-118 430.3 328 66.2
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 1.8e-118 429.9 326 69.0
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.8e-118 429.9 325 69.5
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 3.0e-118 429.1 319 66.8
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 3.0e-118 429.1 325 69.2
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 3.9e-118 428.7 327 69.1
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 3.9e-118 428.7 326 66.0
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.9e-118 428.7 323 69.3
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 3.9e-118 428.7 327 68.5
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 1.1e-117 427.2 323 66.6
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.5e-117 426.8 325 63.7
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.9e-117 426.4 328 68.0
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 2.5e-117 426.0 281 73.0
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 2.5e-117 426.0 323 65.9
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 3.3e-117 425.6 330 63.6
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 3.3e-117 425.6 323 65.6
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 4.3e-117 425.2 328 66.2
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.6e-117 424.9 330 69.1
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 7.4e-117 424.5 323 68.7
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 9.6e-117 424.1 322 66.1
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 9.6e-117 424.1 324 65.1
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.6e-116 423.3 320 70.6
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 1.6e-116 423.3 349 63.3
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.6e-116 423.3 319 64.3
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.7e-116 422.2 320 70.3
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 4.8e-116 421.8 323 65.3
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 5.3e-115 418.3 324 67.0
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 5.8e-114 414.8 324 66.7
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 4.9e-113 411.8 325 64.3
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 2.5e-112 409.5 348 62.9
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 3.2e-112 409.1 320 64.4
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 5.5e-112 408.3 321 64.5
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 2.1e-111 406.4 362 60.5
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 2.1e-111 406.4 319 68.0
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 6.0e-111 404.8 325 63.1
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 1.3e-110 403.7 319 63.9
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 1.5e-109 400.2 318 65.7
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 5.7e-109 398.3 318 65.4
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 1.3e-108 397.1 326 62.3
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 7.7e-106 387.9 265 72.8
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 4.2e-104 382.1 385 53.5
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 3.6e-103 379.0 501 45.7
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 2.5e-101 372.9 312 62.2
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 7.4e-101 371.3 263 68.4
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 8.2e-100 367.9 324 59.3
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 4.5e-98 362.1 264 66.3
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 2.2e-97 359.8 286 63.3
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 2.7e-87 326.2 202 80.7
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 2.0e-82 310.1 189 82.0
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 8.5e-81 304.7 264 54.9
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 9.4e-80 301.2 199 74.4
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 4.4e-77 292.4 183 77.6
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 9.7e-77 291.2 261 54.4
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.2e-74 284.3 175 78.3
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.5e-72 277.3 176 76.7
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 4.2e-72 275.8 168 79.8
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 4.7e-71 272.3 167 78.4
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 6.8e-54 215.3 121 88.4
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 5.8e-53 212.2 193 61.1
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.9e-48 197.2 191 60.7
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 2.5e-48 196.8 124 76.6
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 2.0e-45 187.2 170 52.4
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 9.8e-45 184.9 118 76.3
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.4e-43 180.3 118 73.7
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 4.7e-39 166.0 152 64.5
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.1e-38 164.9 112 70.5
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.5e-34 149.8 118 66.1
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.3e-32 142.9 95 74.7
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.3e-17 94.7 73 63.0
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 4.2e-11 73.2 141 35.5
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 9.3e-11 72.0 158 32.9
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 2.1e-10 70.9 49 67.3
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.3e-09 68.2 144 34.7
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 1.8e-09 67.8 191 26.2
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.0e-09 67.0 148 31.1
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 7.4e-08 62.4 52 65.4
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.6e-07 61.2 178 28.1
Pp3c12_8840 Physcomitrium patens HOM05D005825 ORTHO05D006483 4.8e-07 59.7 157 31.2
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 3.1e-06 57.0 186 28.5
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 6.9e-06 55.8 150 30.7


User provided reference genes

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