Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28153 Brassica carinata HOM05D000171 ORTHO05D012581 5.4e-110 401.0 197 100.0
A06p29670 Brassica napus HOM05D000171 ORTHO05D012581 2.0e-72 276.2 197 72.1
BolC3t18635H Brassica oleracea HOM05D000171 ORTHO05D012581 2.6e-72 275.8 195 72.8
C03p63790 Brassica napus HOM05D000171 ORTHO05D012581 2.3e-68 262.7 195 69.2
BcaC01g02539 Brassica carinata HOM05D000171 ORTHO05D012581 3.9e-52 208.8 120 85.0
C03p63780 Brassica napus HOM05D000171 ORTHO05D012581 3.9e-52 208.8 120 85.0
BolC3t18633H Brassica oleracea HOM05D000171 ORTHO05D012581 3.9e-52 208.8 120 85.0
BcaC01g02538 Brassica carinata HOM05D000171 ORTHO05D012581 8.1e-50 201.1 116 84.5
BcaB02g09704 Brassica carinata HOM05D000503 ORTHO05D012581 8.7e-44 181.0 133 72.9
CARHR276640 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.7e-26 122.5 134 50.7
BcaB07g29855 Brassica carinata HOM05D000171 ORTHO05D000101 1.1e-22 110.9 128 50.0
BcaB02g09698 Brassica carinata HOM05D016076 ORTHO05D012581 4.4e-19 99.0 106 51.9
BraA06t25915Z Brassica rapa HOM05D000171 ORTHO05D012581 5.9e-16 88.6 40 97.5
BcaC02g08267 Brassica carinata HOM05D000171 ORTHO05D000101 3.2e-14 82.8 122 41.8
C04p56550 Brassica napus HOM05D000171 ORTHO05D000101 3.2e-14 82.8 122 41.8
BolC4t27182H Brassica oleracea HOM05D000171 ORTHO05D000101 3.2e-14 82.8 122 41.8
A06p29680 Brassica napus HOM05D000171 ORTHO05D098621 2.1e-13 80.1 79 58.2
A04p20710 Brassica napus HOM05D000171 ORTHO05D000101 3.9e-12 75.9 127 38.6
BraA04t17644Z Brassica rapa HOM05D000171 ORTHO05D000101 8.8e-12 74.7 127 37.8
BcaC01g02529 Brassica carinata HOM05D016076 ORTHO05D012581 1.7e-10 70.5 99 45.5
AL5G37880 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.2e-10 70.1 120 39.2
A04p20720 Brassica napus HOM05D000171 ORTHO05D000101 2.8e-10 69.7 129 39.5
BraA04t17645Z Brassica rapa HOM05D000171 ORTHO05D000101 2.8e-10 69.7 129 39.5
Carub.0001s3083 Capsella rubella HOM05D000171 ORTHO05D000101 2.8e-10 69.7 122 38.5
BcaB06g28125 Brassica carinata HOM05D000171 ORTHO05D000101 4.8e-10 68.9 135 37.0
AL1G60730 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.1e-09 66.2 126 34.9
BcaB06g28126 Brassica carinata HOM05D000171 ORTHO05D000101 4.1e-09 65.9 128 34.4
AL1G46650 Arabidopsis lyrata HOM05D000171 ORTHO05D012581 5.3e-09 65.5 94 44.7
AT5G62860 Arabidopsis thaliana HOM05D016076 ORTHO05D012581 5.3e-09 65.5 58 53.4
Carub.0004s0204 Capsella rubella HOM05D000171 ORTHO05D012581 7.0e-09 65.1 70 45.7
Thhalv10005626m.g Eutrema salsugineum HOM05D016076 ORTHO05D012581 9.1e-09 64.7 58 55.2
BcaB01g03057 Brassica carinata HOM05D000171 ORTHO05D000101 3.5e-08 62.8 131 35.1
AL1G46270 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.3e-07 60.8 134 28.4
BcaC04g23380 Brassica carinata HOM05D000171 ORTHO05D000101 1.7e-07 60.5 122 34.4
C09p08930 Brassica napus HOM05D000171 ORTHO05D000101 1.7e-07 60.5 122 34.4
BolC9t53806H Brassica oleracea HOM05D000171 ORTHO05D000101 1.7e-07 60.5 122 34.4
CARHR276650 Cardamine hirsuta HOM05D016076 ORTHO05D012581 2.2e-07 60.1 56 58.9
C09p08970 Brassica napus HOM05D000171 ORTHO05D000101 3.8e-07 59.3 122 35.2
BolC9t53809H Brassica oleracea HOM05D000171 ORTHO05D000101 3.8e-07 59.3 122 35.2
BolC3t18642H Brassica oleracea HOM05D016076 ORTHO05D012581 1.9e-06 57.0 44 59.1
CARHR264630 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.9e-06 57.0 118 36.4
A07p22900 Brassica napus HOM05D000171 ORTHO05D000101 4.2e-06 55.8 121 31.4
BraA07t29956Z Brassica rapa HOM05D000171 ORTHO05D000101 4.2e-06 55.8 121 31.4
THA.LOC104821034 Tarenaya hassleriana HOM05D000171 ORTHO05D000101 4.2e-06 55.8 109 34.9
THA.LOC104821025 Tarenaya hassleriana HOM05D000171 ORTHO05D000101 5.5e-06 55.5 141 31.9


User provided reference genes

Program Settings