Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.4e-301 1038.9 532 100.0
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 8.4e-267 923.3 549 89.3
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 2.1e-265 918.7 549 89.1
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 2.1e-265 918.7 549 89.1
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 5.8e-260 900.6 548 86.5
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 5.8e-260 900.6 548 86.5
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 9.3e-250 866.7 546 83.2
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 1.7e-235 819.3 547 78.4
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.4e-232 809.7 546 78.4
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 2.5e-218 762.3 552 72.6
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 2.4e-189 666.0 503 71.6
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 2.9e-187 659.1 536 65.9
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 3.9e-179 632.1 412 80.3
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.3e-171 606.3 411 78.1
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.6e-159 566.2 557 56.2
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.8e-159 565.1 557 56.4
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 5.8e-159 565.1 557 56.2
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.3e-155 553.9 562 55.0
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 9.6e-154 547.7 559 54.0
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 6.2e-153 545.0 561 53.8
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 1.8e-152 543.5 563 54.0
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 5.3e-152 542.0 562 54.4
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 5.3e-152 542.0 560 53.9
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 1.3e-150 537.3 557 53.7
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 6.4e-150 535.0 506 56.3
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 8.4e-150 534.6 563 53.3
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.2e-149 532.7 562 53.4
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 5.4e-149 531.9 570 53.0
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.6e-148 530.4 557 53.0
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 6.0e-148 528.5 558 52.3
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.7e-147 526.9 544 53.3
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 8.7e-147 524.6 557 52.6
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.9e-146 523.5 553 53.9
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 2.8e-145 519.6 567 51.3
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.8e-145 519.6 589 50.1
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 8.1e-145 518.1 578 50.2
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 8.1e-145 518.1 568 51.2
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 1.1e-144 517.7 554 51.3
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.8e-144 516.9 551 51.5
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 4.0e-144 515.8 501 56.1
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 5.3e-144 515.4 554 53.1
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 1.2e-143 514.2 556 50.5
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.5e-143 513.8 566 51.8
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 4.5e-143 512.3 563 51.9
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 5.8e-143 511.9 558 51.4
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 7.6e-143 511.5 556 51.8
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.2e-142 510.0 507 55.0
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 2.9e-142 509.6 511 53.8
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 3.8e-142 509.2 560 50.9
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.4e-141 506.5 591 49.2
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 7.1e-141 505.0 546 51.1
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 7.1e-141 505.0 579 49.6
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 9.3e-141 504.6 499 55.1
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 5.1e-139 498.8 539 51.4
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 6.7e-139 498.4 546 50.5
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 1.1e-138 497.7 556 49.6
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 4.3e-138 495.7 556 50.5
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 6.2e-137 491.9 514 52.5
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.8e-136 490.3 508 52.8
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 6.9e-136 488.4 508 52.6
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 3.4e-135 486.1 511 52.8
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 5.8e-135 485.3 512 51.2
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 5.8e-135 485.3 448 57.6
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 1.3e-134 484.2 606 47.4
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.7e-134 483.8 521 50.7
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 8.4e-134 481.5 566 49.5
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-133 481.1 562 49.3
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 1.9e-133 480.3 490 53.5
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.5e-133 479.9 562 48.9
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.2e-132 477.6 571 47.1
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 3.9e-131 472.6 573 46.9
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 6.7e-131 471.9 567 46.6
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 9.0e-128 461.5 561 47.6
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 2.9e-126 456.4 556 47.3
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 1.4e-125 454.1 608 45.7
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.9e-125 453.8 494 51.6
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.5e-125 453.4 551 48.3
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 3.2e-125 453.0 516 48.6
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 1.6e-124 450.7 582 43.8
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 3.0e-123 446.4 564 47.5
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.2e-121 440.3 550 46.4
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 4.8e-121 439.1 437 52.2
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 8.2e-121 438.3 507 48.9
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 1.9e-117 427.2 551 44.8
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 7.2e-117 425.2 413 55.0
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 2.2e-113 413.7 551 45.2
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 2.2e-110 403.7 566 43.1
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 8.5e-110 401.7 560 42.1
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 1.9e-109 400.6 450 48.4
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 1.9e-109 400.6 582 42.1
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 2.7e-108 396.7 544 44.9
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.7e-108 396.7 556 45.5
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.8e-107 394.0 537 42.5
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.5e-106 391.0 431 50.1
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 2.6e-106 390.2 518 44.8
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 5.7e-106 389.0 553 43.4
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 7.4e-106 388.7 400 53.0
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 9.1e-104 381.7 503 45.5
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 9.1e-104 381.7 549 43.7
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 2.9e-102 376.7 348 55.2
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 5.5e-101 372.5 405 51.6
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.5e-98 364.4 462 45.0
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.6e-95 354.4 534 39.7
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 1.1e-93 348.2 444 45.5
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.1e-93 348.2 526 40.1
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 1.8e-88 330.9 465 45.6
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.2e-87 328.2 508 38.0
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 4.7e-84 316.2 426 41.8
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 1.2e-82 311.6 469 40.7
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 2.4e-80 303.9 486 39.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 9.2e-80 302.0 539 36.9
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 6.1e-76 289.3 579 35.1
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 5.7e-74 282.7 459 39.7
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 9.8e-74 282.0 438 40.4
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 1.3e-73 281.6 224 63.4
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.2e-73 280.8 264 57.6
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 2.9e-73 280.4 454 38.5
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 7.8e-71 272.3 328 46.6
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.6e-69 266.2 273 50.9
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 5.2e-67 259.6 437 39.6
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 1.5e-61 241.5 308 44.5
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 6.0e-55 219.5 341 41.1
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 7.6e-50 202.6 368 37.5
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 3.2e-48 197.2 363 35.8
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 1.1e-40 172.2 136 63.2
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 1.7e-38 164.9 191 47.1
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 3.9e-30 137.1 103 75.7
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 7.4e-29 132.9 165 44.2
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 7.4e-29 132.9 132 55.3
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 4.8e-28 130.2 97 62.9
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.1e-21 109.0 214 32.2
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 8.1e-20 102.8 203 34.0
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 2.6e-18 97.8 68 70.6
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.5e-18 97.1 69 65.2
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.0e-17 95.9 68 61.8
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 2.9e-17 94.4 86 57.0
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 2.9e-17 94.4 218 30.7
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 6.7e-14 83.2 54 72.2
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 2.1e-12 78.2 75 54.7
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.8e-12 77.8 53 71.7
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 1.3e-09 68.9 112 34.8
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.2e-07 62.4 110 33.6
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 4.6e-07 60.5 232 27.2
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.0e-06 59.3 231 25.5
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.3e-06 58.9 231 26.0
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.8e-06 58.5 176 26.7
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 3.0e-06 57.8 164 27.4
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 3.0e-06 57.8 104 32.7
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 3.0e-06 57.8 234 25.6
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 5.1e-06 57.0 120 30.8
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 5.1e-06 57.0 230 27.4


User provided reference genes

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