Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28079 Brassica carinata HOM05D007351 ORTHO05D009386 8.7e-116 420.2 201 100.0
A04p19820 Brassica napus HOM05D007351 ORTHO05D009386 1.8e-113 412.5 201 98.0
BcaC02g08337 Brassica carinata HOM05D007351 ORTHO05D009386 1.2e-112 409.8 201 97.5
C04p55560 Brassica napus HOM05D007351 ORTHO05D009386 1.2e-112 409.8 201 97.5
BolC4t27080H Brassica oleracea HOM05D007351 ORTHO05D009386 1.2e-112 409.8 201 97.5
BraA04t17570Z Brassica rapa HOM05D007351 ORTHO05D009386 1.2e-112 409.8 201 97.5
Thhalv10000330m.g Eutrema salsugineum HOM05D007351 ORTHO05D009386 4.1e-105 384.8 201 93.0
AT2G25605 Arabidopsis thaliana HOM05D007351 ORTHO05D009386 1.1e-102 376.7 202 92.1
CARHR115710 Cardamine hirsuta HOM05D007351 ORTHO05D009386 2.5e-102 375.6 202 91.6
Carub.0004s0533 Capsella rubella HOM05D007351 ORTHO05D009386 2.7e-101 372.1 201 90.0
AL4G17070 Arabidopsis lyrata HOM05D007351 ORTHO05D009386 7.9e-101 370.5 201 89.6
Aa31sc586G10 Aethionema arabicum HOM05D007351 ORTHO05D009386 2.0e-96 355.9 201 87.6
THA.LOC104804500 Tarenaya hassleriana HOM05D007351 ORTHO05D009386 1.3e-90 336.7 201 83.6
Eucgr.C01805 Eucalyptus grandis HOM05D007351 ORTHO05D009386 2.2e-87 325.9 207 78.7
GSVIVG01035772001 Vitis vinifera HOM05D007351 ORTHO05D009386 2.2e-87 325.9 204 78.9
Sabra06G0194800 Salix brachista HOM05D007351 ORTHO05D009386 3.2e-86 322.0 202 77.7
Lj8A616G46 Lonicera japonica HOM05D007351 ORTHO05D009386 5.5e-86 321.2 203 77.3
Prupe.1G471900 Prunus persica HOM05D007351 ORTHO05D009386 7.2e-86 320.9 197 77.2
Nn2g11909 Nelumbo nucifera HOM05D007351 ORTHO05D009386 9.4e-86 320.5 200 78.5
Thecc.09G147600 Theobroma cacao HOM05D007351 ORTHO05D009386 1.6e-85 319.7 167 88.6
COL.COLO4_24001 Corchorus olitorius HOM05D007351 ORTHO05D009386 3.6e-85 318.5 167 87.4
TAR625G1337 Trochodendron aralioides HOM05D007351 ORTHO05D009386 6.1e-85 317.8 194 78.9
Potri.006G249000 Populus trichocarpa HOM05D007351 ORTHO05D009386 8.0e-85 317.4 203 77.3
MD08G1141900 Malus domestica HOM05D007351 ORTHO05D009386 1.0e-84 317.0 201 76.6
Gorai.004G110800 Gossypium raimondii HOM05D007351 ORTHO05D009386 1.4e-84 316.6 200 78.0
Atru.chr7.2359 Acer truncatum HOM05D007351 ORTHO05D009386 1.8e-84 316.2 166 87.3
Manes.16G118400 Manihot esculenta HOM05D007351 ORTHO05D009386 1.8e-84 316.2 166 86.1
TWI34G1290 Tripterygium wilfordii HOM05D007351 ORTHO05D009386 2.3e-84 315.8 205 75.6
CiPaw.08G014100 Carya illinoinensis HOM05D007351 ORTHO05D009386 5.2e-84 314.7 164 87.2
Cpa.g.sc91.32 Carica papaya HOM05D007351 ORTHO05D009386 6.7e-84 314.3 206 75.2
MBI04_g00950_MAGBIO Magnolia biondii HOM05D007351 ORTHO05D009386 6.7e-84 314.3 192 77.6
Actinidia15698 Actinidia chinensis HOM05D007351 ORTHO05D009386 8.8e-84 313.9 201 75.1
Ciclev10009550m.g Citrus clementina HOM05D007351 ORTHO05D009386 8.8e-84 313.9 169 87.6
Hma1.2p1_0000F.1_g000940 Hydrangea macrophylla HOM05D007351 ORTHO05D009386 1.1e-83 313.5 197 77.7
arahy.Tifrunner.gnm1.ann1.C4YKET Arachis hypogaea HOM05D007351 ORTHO05D009386 2.0e-83 312.8 166 84.9
CSS0046405 Camellia sinensis var. sinensis HOM05D007351 ORTHO05D009386 3.3e-83 312.0 202 75.7
EL10Ac2g02569 Beta vulgaris HOM05D007351 ORTHO05D009386 5.7e-83 311.2 205 76.1
FvH4_2g29770 Fragaria vesca HOM05D007351 ORTHO05D009386 5.7e-83 311.2 201 73.6
FAN24G0983 Fragaria x ananassa HOM05D007351 ORTHO05D009386 9.7e-83 310.5 166 84.3
FAN27G2935 Fragaria x ananassa HOM05D007351 ORTHO05D009386 9.7e-83 310.5 166 84.3
Gohir.A08G090000 Gossypium hirsutum HOM05D007351 ORTHO05D009386 1.3e-82 310.1 194 76.8
RcHm_v2.0_Chr6g0298791 Rosa chinensis HOM05D007351 ORTHO05D009386 1.3e-82 310.1 166 84.9
PSO170G0157 Papaver somniferum HOM05D007351 ORTHO05D009386 3.7e-82 308.5 167 85.0
PSO017G1621 Papaver somniferum HOM05D007351 ORTHO05D009386 4.8e-82 308.1 167 84.4
FAN15G3188 Fragaria x ananassa HOM05D007351 ORTHO05D009386 6.3e-82 307.8 166 83.7
Ca_15711_v3 Cicer arietinum L. HOM05D007351 ORTHO05D009386 1.4e-81 306.6 201 73.6
Sc06g0000580 Simmondsia chinensis HOM05D007351 ORTHO05D009386 1.8e-81 306.2 201 74.6
Psat5g027160 Pisum sativum HOM05D007351 ORTHO05D009386 5.3e-81 304.7 201 72.6
HanXRQChr13g0402411 Helianthus annuus HOM05D007351 ORTHO05D009386 7.0e-81 304.3 197 75.6
Nitab4.5_0000508g0220 Nicotiana tabacum HOM05D007351 ORTHO05D009386 9.1e-81 303.9 201 73.1
Cc11_g01660 Coffea canephora HOM05D007351 ORTHO05D009386 1.6e-80 303.1 202 74.3
Lj1g0014043 Lotus japonicus HOM05D007351 ORTHO05D009386 1.6e-80 303.1 168 81.0
Medtr3g107860 Medicago truncatula HOM05D007351 ORTHO05D009386 1.6e-80 303.1 165 81.8
Peaxi162Scf00251g01128 Petunia axillaris HOM05D007351 ORTHO05D009386 2.0e-80 302.8 167 82.0
AUR62032351 Chenopodium quinoa HOM05D007351 ORTHO05D009386 3.5e-80 302.0 213 71.8
Glyma.06G071600 Glycine max HOM05D007351 ORTHO05D009386 3.5e-80 302.0 201 71.1
PGSC0003DMG400007382 Solanum tuberosum HOM05D007351 ORTHO05D009386 7.7e-80 300.8 201 72.1
Migut.A00300 Erythranthe guttata HOM05D007351 ORTHO05D009386 1.0e-79 300.4 168 81.5
arahy.Tifrunner.gnm1.ann1.8MNE4Q Arachis hypogaea HOM05D007351 ORTHO05D009386 1.3e-79 300.1 187 75.4
MSTRG.11754 Avicennia marina HOM05D007351 ORTHO05D009386 1.3e-79 300.1 168 81.5
Lalb_Chr23g0268831 Lupinus albus HOM05D007351 ORTHO05D009386 2.9e-79 298.9 166 80.7
Rhsim07G0150700 Rhododendron simsii HOM05D007351 ORTHO05D009386 2.9e-79 298.9 213 70.4
Hund03010 Selenicereus undatus HOM05D007351 ORTHO05D009386 6.5e-79 297.7 166 83.7
Solyc08g067430.4 Solanum lycopersicum HOM05D007351 ORTHO05D009386 6.5e-79 297.7 167 80.2
Glyma.04G069700 Glycine max HOM05D007351 ORTHO05D009386 1.5e-78 296.6 201 70.1
Aqoxy7G02003 Aquilegia oxysepala HOM05D007351 ORTHO05D009386 2.5e-78 295.8 184 76.6
TPR.G27335 Trifolium pratense HOM05D007351 ORTHO05D009386 3.2e-78 295.4 171 78.9
SGA_v2.0_scaffold448G51771 Striga asiatica HOM05D007351 ORTHO05D009386 4.2e-78 295.0 172 79.7
Phvul.009G096100 Phaseolus vulgaris HOM05D007351 ORTHO05D009386 5.5e-78 294.7 166 78.9
ECA233G0102 Erigeron canadensis HOM05D007351 ORTHO05D009386 7.2e-78 294.3 167 80.8
Lsat_1_v5_gn_6_21681 Lactuca sativa HOM05D007351 ORTHO05D009386 7.2e-78 294.3 199 72.4
Os05g0574700 Oryza sativa ssp. japonica HOM05D007351 ORTHO05D009386 1.0e-76 290.4 173 77.5
MELO3C003678.2 Cucumis melo HOM05D007351 ORTHO05D009386 1.4e-76 290.0 165 78.8
unitig_32.g11667 Utricularia gibba HOM05D007351 ORTHO05D009386 1.8e-76 289.7 194 72.7
ATR0680G179 Amborella trichopoda HOM05D007351 ORTHO05D009386 4.0e-76 288.5 170 80.0
Nitab4.5_0002339g0070 Nicotiana tabacum HOM05D007351 ORTHO05D009386 5.2e-76 288.1 204 71.6
Sed0005695 Sechium edule HOM05D007351 ORTHO05D009386 8.8e-76 287.3 166 77.7
CDE06G1133 Ceratophyllum demersum HOM05D007351 ORTHO05D009386 2.0e-75 286.2 169 81.1
Sp4g05090 Schrenkiella parvula HOM05D007351 ORTHO05D009386 3.3e-75 285.4 140 95.7
vmacro05202 Vaccinium macrocarpon HOM05D007351 ORTHO05D009386 7.5e-75 284.3 153 83.7
Sopen08g021360 Solanum pennellii HOM05D007351 ORTHO05D009386 1.7e-74 283.1 207 69.1
AUR62041846 Chenopodium quinoa HOM05D007351 ORTHO05D009386 4.5e-72 275.0 164 81.1
VMungo1309G2796 Vigna mungo HOM05D007351 ORTHO05D009386 4.7e-69 265.0 177 71.2
Duzib150G1343 Durio zibethinus HOM05D007351 ORTHO05D009386 5.2e-68 261.5 141 88.7
Gohir.D08G102800 Gossypium hirsutum HOM05D007351 ORTHO05D009386 6.8e-68 261.2 175 74.9
SEGI_27006 Sequoiadendron giganteum HOM05D007351 ORTHO05D009386 1.2e-67 260.4 181 68.0
QL12p031742 Quercus lobata HOM05D007351 ORTHO05D009386 5.7e-67 258.1 172 77.3
CsaV3_3G046600 Cucumis sativus L. HOM05D007351 ORTHO05D009386 1.7e-66 256.5 141 81.6
PGR031G1798 Punica granatum HOM05D007351 ORTHO05D009386 6.3e-66 254.6 135 85.2
DCAR_003046 Daucus carota HOM05D007351 ORTHO05D009386 1.7e-63 246.5 143 81.1
CANSAT11G2455 Cannabis sativa HOM05D007351 ORTHO05D009386 8.6e-63 244.2 172 68.6
Mapoly0036s0071 Marchantia polymorpha HOM05D007351 ORTHO05D009386 1.1e-62 243.8 167 67.1
Zm00001eb344390 Zea mays HOM05D007351 ORTHO05D009386 1.2e-61 240.4 169 68.0
SMO269G0024 Selaginella moellendorffii HOM05D007351 ORTHO05D009386 2.6e-59 232.6 154 68.8
Pp3c17_16830 Physcomitrium patens HOM05D007351 ORTHO05D009386 3.4e-59 232.3 175 64.0
Oeu045191.1 Olea europaea HOM05D007351 ORTHO05D009386 6.3e-58 228.0 161 71.4
AagrBONN_evm.TU.Sc2ySwM_228.1243 Anthoceros agrestis HOM05D007351 ORTHO05D009386 3.1e-57 225.7 152 70.4
Haze_21592 Corylus avellana HOM05D007351 ORTHO05D009386 2.0e-56 223.0 111 90.1
CBR_g40414 Chara braunii HOM05D007351 ORTHO05D009386 6.0e-48 194.9 154 58.4
CANSAT54G2502 Cannabis sativa HOM05D007351 ORTHO05D009386 2.8e-45 186.0 143 65.0
Cre17.g746897 Chlamydomonas reinhardtii HOM05D007351 ORTHO05D009386 4.7e-29 132.1 140 44.3
vmacro05206 Vaccinium macrocarpon HOM05D007351 ORTHO05D009386 9.3e-17 91.3 165 36.4
Pp3c16_22900 Physcomitrium patens HOM05D033550 ORTHO05D017832 2.2e-10 70.1 133 36.8
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 7.1e-09 65.1 37 75.7
Mapoly0006s0206 Marchantia polymorpha HOM05D017363 ORTHO05D018319 1.2e-08 64.3 172 23.3
SMO356G0529 Selaginella moellendorffii HOM05D017363 ORTHO05D018319 1.8e-07 60.5 180 28.9
SEGI_25541 Sequoiadendron giganteum HOM05D007351 ORTHO05D017832 6.7e-07 58.5 137 30.7
Cre16.g683300 Chlamydomonas reinhardtii HOM05D027270 ORTHO05D017832 5.6e-06 55.5 132 31.8


User provided reference genes

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