Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28000 Brassica carinata HOM05D009532 ORTHO05D005130 5.4e-174 614.4 343 100.0
BcaB02g11054 Brassica carinata HOM05D009532 ORTHO05D005130 3.1e-81 306.2 329 63.2
BcaC08g43125 Brassica carinata HOM05D009532 ORTHO05D013511 2.4e-73 280.0 346 51.4
BcaC04g20884 Brassica carinata HOM05D009532 ORTHO05D013511 6.3e-66 255.4 311 52.1
BcaC07g37797 Brassica carinata HOM05D009532 ORTHO05D013511 5.9e-64 248.8 319 49.8
BraA06t24764Z Brassica rapa HOM05D009532 ORTHO05D013511 1.6e-61 240.7 346 49.4
C08p25340 Brassica napus HOM05D009532 ORTHO05D013511 1.6e-56 224.2 297 49.8
BolC8t50155H Brassica oleracea HOM05D009532 ORTHO05D013511 1.6e-56 224.2 297 49.8
BolC5t32294H Brassica oleracea HOM05D009532 ORTHO05D013511 3.5e-56 223.0 346 44.8
BcaC07g39489 Brassica carinata HOM05D009532 ORTHO05D013511 5.9e-56 222.2 307 49.5
A08p07770 Brassica napus HOM05D009532 ORTHO05D013511 3.3e-54 216.5 346 46.5
BcaC01g05681 Brassica carinata HOM05D009532 ORTHO05D013511 2.1e-53 213.8 338 45.6
BcaB06g26180 Brassica carinata HOM05D009532 ORTHO05D005130 4.7e-53 212.6 258 50.0
C06p04000 Brassica napus HOM05D009532 ORTHO05D013511 1.4e-52 211.1 346 43.4
BolC8t48188H Brassica oleracea HOM05D009532 ORTHO05D013511 6.8e-52 208.8 319 45.1
C09p38200 Brassica napus HOM05D009532 ORTHO05D013511 7.8e-48 195.3 346 41.9
A03p68740 Brassica napus HOM05D009532 ORTHO05D013511 3.0e-47 193.4 294 48.6
BraSC39t46189Z Brassica rapa HOM05D009532 ORTHO05D013511 3.0e-47 193.4 294 48.6
BolC9t56660H Brassica oleracea HOM05D009532 ORTHO05D013511 3.6e-45 186.4 346 40.5
BolC3t14726H Brassica oleracea HOM05D009532 ORTHO05D033241 6.2e-37 159.1 139 68.3
A08p07350 Brassica napus HOM05D009532 ORTHO05D033241 1.1e-33 148.3 139 66.2
BraA08t32751Z Brassica rapa HOM05D009532 ORTHO05D033241 1.1e-33 148.3 139 66.2
C06p05550 Brassica napus HOM05D009532 ORTHO05D013511 2.1e-32 144.1 103 70.9
C02p31360 Brassica napus HOM05D009532 ORTHO05D005130 1.4e-28 131.3 139 59.7
BcaB07g32749 Brassica carinata HOM05D008316 ORTHO05D013031 4.0e-28 129.8 380 31.3
C06p07740 Brassica napus HOM05D009532 ORTHO05D100888 5.4e-25 119.4 139 56.1
BcaC08g42812 Brassica carinata HOM05D008825 ORTHO05D013031 1.1e-22 111.7 277 33.6
C05p37400 Brassica napus HOM05D003554 ORTHO05D005130 2.6e-19 100.5 208 31.7
BcaC05g27750 Brassica carinata HOM05D008825 ORTHO05D013031 1.4e-17 94.7 254 31.1
Carub.0093s0002 Capsella rubella HOM05D003554 ORTHO05D005130 4.3e-14 83.2 222 29.3
C02p14930 Brassica napus HOM05D008316 ORTHO05D014956 7.3e-14 82.4 74 48.6
C05p06190 Brassica napus HOM05D003554 ORTHO05D005130 2.8e-13 80.5 80 52.5
C03p67190 Brassica napus HOM05D003554 ORTHO05D005130 4.8e-13 79.7 82 51.2
C06p00220 Brassica napus HOM05D003554 ORTHO05D005130 4.8e-13 79.7 82 51.2
BolC5t32273H Brassica oleracea HOM05D003554 ORTHO05D005130 4.8e-13 79.7 82 51.2
Carub.0002s1016 Capsella rubella HOM05D003554 ORTHO05D005130 6.2e-13 79.3 191 30.4
BcaB05g24479 Brassica carinata HOM05D008316 ORTHO05D017243 8.1e-13 79.0 366 29.5
BcaB05g25144 Brassica carinata HOM05D008316 ORTHO05D005130 8.1e-13 79.0 72 50.0
BcaC09g49342 Brassica carinata HOM05D008316 ORTHO05D005130 8.1e-13 79.0 72 50.0
BraA07t28446Z Brassica rapa HOM05D003554 ORTHO05D005130 1.4e-12 78.2 82 51.2
BcaB02g06748 Brassica carinata HOM05D008316 ORTHO05D005130 1.8e-12 77.8 83 44.6
BcaB05g23532 Brassica carinata HOM05D008316 ORTHO05D005130 1.8e-12 77.8 85 42.4
BNapus_Darmor_BZH_scaffold_167p00060 Brassica napus HOM05D003554 ORTHO05D005130 3.1e-12 77.0 80 51.2
A07p06510 Brassica napus HOM05D003554 ORTHO05D005130 1.2e-11 75.1 82 50.0
Aa31sc454G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.0e-11 74.3 90 45.6
BcaC02g09635 Brassica carinata HOM05D008316 ORTHO05D005130 2.0e-11 74.3 74 45.9
Carub.0002s1014 Capsella rubella HOM05D003554 ORTHO05D005130 2.6e-11 73.9 185 31.4
BcaC04g20935 Brassica carinata HOM05D008316 ORTHO05D005130 7.6e-11 72.4 72 44.4
BcaC08g44739 Brassica carinata HOM05D008316 ORTHO05D005130 7.6e-11 72.4 64 51.6
BcaC08g42899 Brassica carinata HOM05D003554 ORTHO05D005130 2.9e-10 70.5 189 30.7
Aa31sc129G60 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.8e-10 70.1 60 60.0
BcaB07g32291 Brassica carinata HOM05D008316 ORTHO05D014956 3.8e-10 70.1 63 50.8
BcaNung01161 Brassica carinata HOM05D007203 ORTHO05D011558 6.4e-10 69.3 60 53.3
BcaB06g28040 Brassica carinata HOM05D008316 ORTHO05D005130 8.4e-10 68.9 412 24.3
BolC9t56577H Brassica oleracea HOM05D004128 ORTHO05D008395 1.4e-09 68.2 60 51.7
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 1.4e-09 68.2 77 44.2
Carub.0007s0014 Capsella rubella HOM05D003554 ORTHO05D005130 1.4e-09 68.2 77 44.2
BcaC02g08561 Brassica carinata HOM05D008316 ORTHO05D014956 1.9e-09 67.8 72 44.4
BolC4t26823H Brassica oleracea HOM05D008316 ORTHO05D014956 1.9e-09 67.8 84 41.7
Carub.0006s2609 Capsella rubella HOM05D003554 ORTHO05D005130 1.9e-09 67.8 77 42.9
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 1.9e-09 67.8 77 44.2
C02p57980 Brassica napus HOM05D017905 ORTHO05D017243 4.2e-09 66.6 67 43.3
BraA08t32672Z Brassica rapa HOM05D008316 ORTHO05D014956 5.4e-09 66.2 68 47.1
BcaB08g35337 Brassica carinata HOM05D003554 ORTHO05D005130 7.1e-09 65.9 81 39.5
CARHR049310 Cardamine hirsuta HOM05D003554 ORTHO05D005130 7.1e-09 65.9 77 44.2
C07p33860 Brassica napus HOM05D004128 ORTHO05D008395 9.3e-09 65.5 56 53.6
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 1.2e-08 65.1 56 53.6
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 1.6e-08 64.7 225 25.8
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 2.1e-08 64.3 117 33.3
C08p06800 Brassica napus HOM05D003554 ORTHO05D005130 3.5e-08 63.5 80 43.8
BolC3t19531H Brassica oleracea HOM05D003554 ORTHO05D005130 4.6e-08 63.2 77 48.1
BcaB02g11366 Brassica carinata HOM05D007984 ORTHO05D013027 6.0e-08 62.8 81 39.5
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 6.0e-08 62.8 77 42.9
Aa31LG10G9040 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.9e-08 62.4 84 41.7
AL1G56530 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 7.9e-08 62.4 110 35.5
AL1G56540 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 7.9e-08 62.4 110 35.5
BcaB08g35391 Brassica carinata HOM05D003554 ORTHO05D005130 1.0e-07 62.0 93 41.9
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 1.0e-07 62.0 199 26.1
Aa31LG11G8070 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.3e-07 61.6 88 43.2
BolC3t13324H Brassica oleracea HOM05D003554 ORTHO05D008395 1.8e-07 61.2 73 42.5
Aa31LG6G10050 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.0e-07 60.5 84 42.9
BcaB02g11541 Brassica carinata HOM05D003554 ORTHO05D005130 3.9e-07 60.1 59 44.1
C06p05560 Brassica napus HOM05D009532 ORTHO05D101814 3.9e-07 60.1 39 79.5
BolC8t48343H Brassica oleracea HOM05D008316 ORTHO05D014956 3.9e-07 60.1 55 45.5
BcaB01g02862 Brassica carinata HOM05D003554 ORTHO05D005130 8.7e-07 58.9 80 37.5
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 8.7e-07 58.9 71 39.4
BcaB08g35293 Brassica carinata HOM05D003554 ORTHO05D005130 1.1e-06 58.5 74 43.2
C01p21660 Brassica napus HOM05D008825 ORTHO05D100998 1.1e-06 58.5 62 45.2
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 1.1e-06 58.5 76 42.1
BcaC03g16254 Brassica carinata HOM05D003554 ORTHO05D005130 1.5e-06 58.2 59 44.1
BcaB01g01280 Brassica carinata HOM05D003554 ORTHO05D005130 1.9e-06 57.8 59 45.8
BcaB01g01146 Brassica carinata HOM05D003554 ORTHO05D005130 2.5e-06 57.4 174 29.3
BolC4t23182H Brassica oleracea HOM05D003554 ORTHO05D005130 2.5e-06 57.4 64 50.0
AL2G17330 Arabidopsis lyrata HOM05D003554 ORTHO05D008395 3.3e-06 57.0 58 43.1
BcaC01g04710 Brassica carinata HOM05D008825 ORTHO05D013031 3.3e-06 57.0 88 37.5
C01p42550 Brassica napus HOM05D008316 ORTHO05D014956 3.3e-06 57.0 55 43.6
BraA09t38753Z Brassica rapa HOM05D008825 ORTHO05D013031 4.3e-06 56.6 74 39.2
BcaB04g17553 Brassica carinata HOM05D008316 ORTHO05D014956 5.6e-06 56.2 340 25.9
BcaB04g17902 Brassica carinata HOM05D003554 ORTHO05D005130 7.4e-06 55.8 80 36.2
C02p33250 Brassica napus HOM05D003554 ORTHO05D005130 9.6e-06 55.5 63 46.0


User provided reference genes

Program Settings