Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27969 Brassica carinata HOM05D005678 ORTHO05D006894 2.8e-68 262.3 183 100.0
C04p54050 Brassica napus HOM05D005678 ORTHO05D006894 6.2e-60 234.6 184 83.7
BcaC02g08455 Brassica carinata HOM05D005678 ORTHO05D006894 4.0e-59 231.9 196 83.2
BolC4t26956H Brassica oleracea HOM05D005678 ORTHO05D006894 2.6e-58 229.2 196 71.9
BraA04t17485Z Brassica rapa HOM05D005678 ORTHO05D006894 1.9e-56 223.0 218 76.6
A04p18760 Brassica napus HOM05D005678 ORTHO05D006894 1.6e-55 219.9 219 75.3
CARHR117620 Cardamine hirsuta HOM05D005678 ORTHO05D006894 3.0e-38 162.5 197 65.0
AT2G24440 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 5.1e-38 161.8 187 70.6
C08p39250 Brassica napus HOM05D005678 ORTHO05D006894 1.9e-37 159.8 183 64.5
Thhalv10000334m.g Eutrema salsugineum HOM05D005678 ORTHO05D006894 3.3e-37 159.1 196 71.9
BolC8t51499H Brassica oleracea HOM05D005678 ORTHO05D006894 4.3e-37 158.7 184 64.1
BcaC09g51917 Brassica carinata HOM05D005678 ORTHO05D006894 1.3e-36 157.1 185 50.8
C01p07670 Brassica napus HOM05D005678 ORTHO05D006894 1.3e-36 157.1 185 50.8
BolC1t00747H Brassica oleracea HOM05D005678 ORTHO05D006894 1.3e-36 157.1 185 50.8
AL7G20710 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 2.1e-36 156.4 185 54.6
A09p56300 Brassica napus HOM05D005678 ORTHO05D006894 4.8e-36 155.2 186 64.0
BraA09t41025Z Brassica rapa HOM05D005678 ORTHO05D006894 4.8e-36 155.2 186 64.0
Sp7g29220 Schrenkiella parvula HOM05D005678 ORTHO05D006894 4.8e-36 155.2 185 52.4
Sp4g03460 Schrenkiella parvula HOM05D005678 ORTHO05D006894 6.2e-36 154.8 193 71.0
Carub.0007s0920 Capsella rubella HOM05D005678 ORTHO05D006894 1.4e-35 153.7 191 53.4
A01p06940 Brassica napus HOM05D005678 ORTHO05D006894 2.4e-35 152.9 185 55.7
THA.LOC104801628 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 2.4e-35 152.9 185 49.7
BraA01t00642Z Brassica rapa HOM05D005678 ORTHO05D006894 1.5e-34 150.2 185 56.2
Carub.0004s0379 Capsella rubella HOM05D005678 ORTHO05D006894 7.6e-34 147.9 85 83.5
AL4G14870 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 9.9e-34 147.5 198 68.7
AT4G31360 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 1.7e-33 146.7 191 52.9
THA.LOC104803592 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 2.9e-33 146.0 189 44.4
BcaC07g40931 Brassica carinata HOM05D005678 ORTHO05D006894 4.9e-33 145.2 183 65.0
Prupe.1G462000 Prunus persica HOM05D005678 ORTHO05D006894 1.9e-32 143.3 90 75.6
Manes.03G002700 Manihot esculenta HOM05D005678 ORTHO05D006894 2.4e-32 142.9 87 77.0
Thecc.09G005500 Theobroma cacao HOM05D005678 ORTHO05D006894 2.4e-32 142.9 188 56.9
Aa31LG2G19000 Aethionema arabicum HOM05D005678 ORTHO05D006894 3.2e-32 142.5 189 51.3
Ciclev10009502m.g Citrus clementina HOM05D005678 ORTHO05D006894 4.2e-32 142.1 90 73.3
Gohir.A05G065600 Gossypium hirsutum HOM05D005678 ORTHO05D006894 7.1e-32 141.4 90 72.2
Gohir.D05G068200 Gossypium hirsutum HOM05D005678 ORTHO05D006894 1.2e-31 140.6 90 72.2
Gorai.009G069000 Gossypium raimondii HOM05D005678 ORTHO05D006894 1.2e-31 140.6 90 72.2
Sc09g0007960 Simmondsia chinensis HOM05D005678 ORTHO05D006894 2.1e-31 139.8 85 77.6
MD00G1173100 Malus domestica HOM05D005678 ORTHO05D006894 3.5e-31 139.0 90 74.4
MD08G1134200 Malus domestica HOM05D005678 ORTHO05D006894 3.5e-31 139.0 90 74.4
Duzib187G0563 Durio zibethinus HOM05D005678 ORTHO05D006894 6.0e-31 138.3 90 70.0
vmacro00604 Vaccinium macrocarpon HOM05D005678 ORTHO05D006894 1.8e-30 136.7 87 73.6
Sc09g0007970 Simmondsia chinensis HOM05D005678 ORTHO05D006894 3.9e-30 135.6 85 75.3
MD15G1109600 Malus domestica HOM05D005678 ORTHO05D006894 5.1e-30 135.2 89 74.2
Eucgr.C02102 Eucalyptus grandis HOM05D005678 ORTHO05D006894 6.7e-30 134.8 89 71.9
Sed0002806 Sechium edule HOM05D005678 ORTHO05D006894 6.7e-30 134.8 86 73.3
Aa31LG7G11430 Aethionema arabicum HOM05D005678 ORTHO05D006894 1.1e-29 134.0 201 48.3
ClCG08G012760 Citrullus lanatus HOM05D005678 ORTHO05D006894 1.5e-29 133.7 89 67.4
GSVIVG01035539001 Vitis vinifera HOM05D005678 ORTHO05D006894 1.5e-29 133.7 87 72.4
arahy.Tifrunner.gnm1.ann1.V3TD4F Arachis hypogaea HOM05D005678 ORTHO05D006894 3.3e-29 132.5 85 74.1
arahy.Tifrunner.gnm1.ann1.XT6XQE Arachis hypogaea HOM05D005678 ORTHO05D006894 3.3e-29 132.5 85 74.1
CANSAT25G2809 Cannabis sativa HOM05D005678 ORTHO05D006894 4.3e-29 132.1 87 72.4
TWI34G1196 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 5.6e-29 131.7 88 70.5
MELO3C011199.2 Cucumis melo HOM05D005678 ORTHO05D006894 7.4e-29 131.3 89 66.3
CsaV3_2G031490 Cucumis sativus L. HOM05D005678 ORTHO05D006894 9.6e-29 131.0 89 66.3
Migut.A00794 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.3e-28 130.6 87 67.8
QL12p024739 Quercus lobata HOM05D005678 ORTHO05D006894 1.3e-28 130.6 86 70.9
PSO063G6472 Papaver somniferum HOM05D005678 ORTHO05D006894 1.6e-28 130.2 84 72.6
PSO170G6167 Papaver somniferum HOM05D005678 ORTHO05D006894 1.6e-28 130.2 84 72.6
Cpa.g.sc244.11 Carica papaya HOM05D005678 ORTHO05D006894 2.1e-28 129.8 90 66.7
CiPaw.08G018100 Carya illinoinensis HOM05D005678 ORTHO05D006894 2.1e-28 129.8 87 72.4
Duzib168G0107 Durio zibethinus HOM05D005678 ORTHO05D006894 2.1e-28 129.8 94 67.0
Actinidia03578 Actinidia chinensis HOM05D005678 ORTHO05D006894 4.8e-28 128.6 87 69.0
CiPaw.07G214300 Carya illinoinensis HOM05D005678 ORTHO05D006894 4.8e-28 128.6 87 69.0
Lj5g0006596 Lotus japonicus HOM05D005678 ORTHO05D006894 4.8e-28 128.6 88 65.9
TAR383G0152 Trochodendron aralioides HOM05D005678 ORTHO05D006894 6.2e-28 128.3 87 66.7
Dinv16205 Davidia involucrata HOM05D005678 ORTHO05D006894 1.4e-27 127.1 189 42.9
Oeu009186.1 Olea europaea HOM05D005678 ORTHO05D006894 1.8e-27 126.7 87 70.1
Phvul.001G058200 Phaseolus vulgaris HOM05D005678 ORTHO05D006894 2.4e-27 126.3 85 68.2
Potri.018G004901 Populus trichocarpa HOM05D005678 ORTHO05D006894 2.4e-27 126.3 86 67.4
Sabra18G0010600 Salix brachista HOM05D005678 ORTHO05D006894 4.0e-27 125.6 86 67.4
Glyma.17G201900 Glycine max HOM05D005678 ORTHO05D006894 6.9e-27 124.8 89 64.0
VMungo0647G1216 Vigna mungo HOM05D005678 ORTHO05D006894 6.9e-27 124.8 88 63.6
A08p18690 Brassica napus HOM05D002168 ORTHO05D002277 9.0e-27 124.4 87 69.0
HanXRQChr06g0173291 Helianthus annuus HOM05D005678 ORTHO05D006894 9.0e-27 124.4 87 69.0
Sabra06G0213900 Salix brachista HOM05D005678 ORTHO05D006894 9.0e-27 124.4 87 65.5
MSTRG.1882 Avicennia marina HOM05D005678 ORTHO05D006894 1.2e-26 124.0 87 65.5
HanXRQChr17g0536371 Helianthus annuus HOM05D005678 ORTHO05D006894 1.2e-26 124.0 87 69.0
Hma1.2p1_0102F.1_g049830 Hydrangea macrophylla HOM05D005678 ORTHO05D006894 1.2e-26 124.0 90 62.2
ECA246G1984 Erigeron canadensis HOM05D005678 ORTHO05D006894 2.0e-26 123.2 87 65.5
SGA_v2.0_scaffold146G36252 Striga asiatica HOM05D005678 ORTHO05D006894 2.0e-26 123.2 87 67.8
Glyma.14G133100 Glycine max HOM05D005678 ORTHO05D006894 3.4e-26 122.5 89 65.2
RcHm_v2.0_Chr6g0312181 Rosa chinensis HOM05D005678 ORTHO05D006894 3.4e-26 122.5 87 67.8
SalBow6G4551 Salvia bowleyana HOM05D005678 ORTHO05D006894 4.5e-26 122.1 87 66.7
Nitab4.5_0008905g0030 Nicotiana tabacum HOM05D005678 ORTHO05D006894 5.8e-26 121.7 91 65.9
TPR.G12081 Trifolium pratense HOM05D005678 ORTHO05D006894 7.6e-26 121.3 182 45.6
Lsat_1_v5_gn_3_22720 Lactuca sativa HOM05D005678 ORTHO05D006894 9.9e-26 120.9 84 70.2
Nitab4.5_0001356g0020 Nicotiana tabacum HOM05D005678 ORTHO05D006894 9.9e-26 120.9 92 66.3
PGR142G1712 Punica granatum HOM05D005678 ORTHO05D006894 9.9e-26 120.9 87 65.5
Aqoxy7G03048 Aquilegia oxysepala HOM05D005678 ORTHO05D006894 1.3e-25 120.6 85 68.2
Os11g0704000 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 1.3e-25 120.6 90 62.2
Psat6g032200 Pisum sativum HOM05D005678 ORTHO05D006894 1.3e-25 120.6 84 66.7
BolC3t21115H Brassica oleracea HOM05D005678 ORTHO05D006894 1.7e-25 120.2 82 70.7
FAN27G1837 Fragaria x ananassa HOM05D005678 ORTHO05D006894 1.7e-25 120.2 87 65.5
FAN15G3337 Fragaria x ananassa HOM05D005678 ORTHO05D006894 2.9e-25 119.4 87 65.5
FvH4_2g30710 Fragaria vesca HOM05D005678 ORTHO05D006894 3.8e-25 119.0 87 65.5
FAN20G0695 Fragaria x ananassa HOM05D005678 ORTHO05D006894 3.8e-25 119.0 87 65.5
FAN24G1799 Fragaria x ananassa HOM05D000178 ORTHO05D001582 3.8e-25 119.0 87 65.5
MBI16_g25208_MAGBIO Magnolia biondii HOM05D005678 ORTHO05D006894 3.8e-25 119.0 85 63.5
CARHR239240 Cardamine hirsuta HOM05D005678 ORTHO05D006894 6.4e-25 118.2 165 52.7
Cc08_g14330 Coffea canephora HOM05D005678 ORTHO05D006894 6.4e-25 118.2 89 64.0
Lalb_Chr24g0402441 Lupinus albus HOM05D005678 ORTHO05D006894 8.4e-25 117.9 85 64.7
Atru.chr7.2621 Acer truncatum HOM05D005678 ORTHO05D006894 2.4e-24 116.3 91 58.2
Ca_12878_v3 Cicer arietinum L. HOM05D005678 ORTHO05D006894 1.2e-23 114.0 83 61.4
CAN.G859.10 Capsicum annuum HOM05D005678 ORTHO05D006894 1.6e-23 113.6 89 61.8
Os05g0250500 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 1.6e-23 113.6 86 61.6
TWI63G1651 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 1.6e-23 113.6 88 62.5
Sopen08g029020 Solanum pennellii HOM05D005678 ORTHO05D006894 2.7e-23 112.8 89 61.8
Zm00001eb409020 Zea mays HOM05D005678 ORTHO05D006894 7.9e-23 111.3 87 58.6
PGSC0003DMG400003060 Solanum tuberosum HOM05D005678 ORTHO05D006894 2.3e-22 109.8 89 60.7
COL.COLO4_19050 Corchorus olitorius HOM05D005678 ORTHO05D006894 8.7e-22 107.8 88 53.4
SHI21122 Sapria himalayana HOM05D005678 ORTHO05D006894 1.1e-21 107.5 77 62.3
Pp3c6_27420 Physcomitrium patens HOM05D005678 ORTHO05D006894 1.5e-21 107.1 85 54.1
Pp3c5_240 Physcomitrium patens HOM05D005678 ORTHO05D006894 4.3e-21 105.5 85 55.3
Sabra18G0000200 Salix brachista HOM05D005678 ORTHO05D006894 1.3e-20 104.0 131 44.3
HPP92_015389 Vanilla planifolia HOM05D005678 ORTHO05D006894 1.1e-19 100.9 83 59.0
HPP92_027003 Vanilla planifolia HOM05D005678 ORTHO05D006894 1.1e-19 100.9 83 59.0
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 9.0e-19 97.8 183 33.3
Hund19398 Selenicereus undatus HOM05D005678 ORTHO05D006894 7.6e-18 94.7 87 52.9
SEGI_38696 Sequoiadendron giganteum HOM05D005678 ORTHO05D006894 7.6e-18 94.7 87 50.6
Mapoly0188s0010 Marchantia polymorpha HOM05D005678 ORTHO05D006894 1.0e-17 94.4 90 47.8
BcaC01g01095 Brassica carinata HOM05D005678 ORTHO05D006894 1.7e-17 93.6 67 67.2
Migut.E01115 Erythranthe guttata HOM05D005678 ORTHO05D006894 2.5e-16 89.7 87 48.3
Haze_21702 Corylus avellana HOM05D005678 ORTHO05D006894 1.6e-15 87.0 54 70.4
Peaxi162Scf00102g01516 Petunia axillaris HOM05D005678 ORTHO05D006894 1.8e-14 83.6 57 64.9
Migut.E01114 Erythranthe guttata HOM05D005678 ORTHO05D006894 6.7e-14 81.6 84 45.2
HanXRQChr04g0118101 Helianthus annuus HOM05D005678 ORTHO05D006894 7.4e-13 78.2 56 62.5
Haze_21709 Corylus avellana HOM05D005678 ORTHO05D006894 9.7e-13 77.8 47 76.6
Cre02.g120301 Chlamydomonas reinhardtii HOM05D005678 ORTHO05D006894 3.7e-12 75.9 69 47.8
Rhsim09G0030000 Rhododendron simsii HOM05D005678 ORTHO05D006894 1.1e-11 74.3 94 45.7
C03p88040 Brassica napus HOM05D005678 ORTHO05D006894 3.6e-07 59.3 39 66.7


User provided reference genes

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