Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27968 Brassica carinata HOM05D000010 ORTHO05D000302 4.7e-83 311.2 167 100.0
BcaC02g08456 Brassica carinata HOM05D000010 ORTHO05D000302 4.7e-83 311.2 167 100.0
BolC4t26955H Brassica oleracea HOM05D000010 ORTHO05D000302 5.2e-82 307.8 166 99.4
A04p18740 Brassica napus HOM05D000010 ORTHO05D000302 1.7e-72 276.2 166 91.0
BraA04t17484Z Brassica rapa HOM05D000010 ORTHO05D000302 3.8e-72 275.0 166 90.4
C04p54030 Brassica napus HOM05D000010 ORTHO05D000302 4.2e-71 271.6 166 89.8
BcaC02g08461 Brassica carinata HOM05D000010 ORTHO05D000302 3.3e-68 261.9 166 85.5
Sp4g03450 Schrenkiella parvula HOM05D000010 ORTHO05D000302 4.8e-67 258.1 166 84.9
Carub.0004s0378 Capsella rubella HOM05D000010 ORTHO05D000302 5.3e-66 254.6 168 85.7
A09p56310 Brassica napus HOM05D000010 ORTHO05D000302 1.7e-64 249.6 166 80.7
BraA09t41026Z Brassica rapa HOM05D000010 ORTHO05D000302 1.7e-64 249.6 166 80.7
Thhalv10000520m.g Eutrema salsugineum HOM05D000010 ORTHO05D000302 1.9e-63 246.1 167 83.8
BcaC07g40933 Brassica carinata HOM05D000010 ORTHO05D000302 3.2e-63 245.4 166 78.9
C08p39270 Brassica napus HOM05D000010 ORTHO05D000302 3.2e-63 245.4 166 78.9
BolC8t51500H Brassica oleracea HOM05D000010 ORTHO05D000302 3.2e-63 245.4 166 78.9
AT2G24430 Arabidopsis thaliana HOM05D000010 ORTHO05D000302 4.2e-63 245.0 166 81.3
AL4G14860 Arabidopsis lyrata HOM05D000010 ORTHO05D000302 9.6e-60 233.8 169 78.7
BcaC02g08458 Brassica carinata HOM05D000010 ORTHO05D000302 1.3e-59 233.4 155 85.2
CARHR117630 Cardamine hirsuta HOM05D000010 ORTHO05D000302 2.4e-58 229.2 166 81.9
Aa31LG7G11380 Aethionema arabicum HOM05D000010 ORTHO05D000302 1.3e-40 170.2 185 65.9
THA.LOC104803880 Tarenaya hassleriana HOM05D000010 ORTHO05D000302 1.8e-29 133.3 175 50.9
THA.LOC104803591 Tarenaya hassleriana HOM05D000010 ORTHO05D000302 5.0e-24 115.2 193 46.1
Potri.018G003800 Populus trichocarpa HOM05D000010 ORTHO05D000302 2.2e-16 89.7 196 34.2
Thecc.09G004500 Theobroma cacao HOM05D000010 ORTHO05D000302 1.1e-15 87.4 191 36.1
Duzib168G0631 Durio zibethinus HOM05D000010 ORTHO05D000302 1.9e-15 86.7 196 36.7
Manes.03G002200 Manihot esculenta HOM05D000010 ORTHO05D000302 1.9e-15 86.7 193 35.8
Sabra18G0009400 Salix brachista HOM05D000010 ORTHO05D000302 7.2e-15 84.7 203 33.0
Cfa013323 Carpinus fangiana HOM05D000010 ORTHO05D000302 4.7e-14 82.0 206 34.5
Ciclev10008885m.g Citrus clementina HOM05D000010 ORTHO05D000302 1.4e-13 80.5 200 31.5
Sabra06G0214700 Salix brachista HOM05D000010 ORTHO05D000302 3.0e-13 79.3 206 33.0
Cpa.g.sc244.7 Carica papaya HOM05D000010 ORTHO05D000302 6.7e-13 78.2 207 31.9
Gorai.010G124100 Gossypium raimondii HOM05D000010 ORTHO05D000302 1.2e-12 77.4 195 33.3
Potri.006G277000 Populus trichocarpa HOM05D000010 ORTHO05D000302 1.2e-12 77.4 201 32.3
Glyma.04G078600 Glycine max HOM05D000010 ORTHO05D000302 1.5e-12 77.0 207 32.4
Haze_21812 Corylus avellana HOM05D000010 ORTHO05D000302 2.0e-12 76.6 203 35.0
Hund19393 Selenicereus undatus HOM05D000010 ORTHO05D000302 3.3e-12 75.9 202 36.6
Gohir.D06G109300 Gossypium hirsutum HOM05D000010 ORTHO05D000302 4.4e-12 75.5 194 33.0
Eucgr.C02105 Eucalyptus grandis HOM05D000010 ORTHO05D000302 5.7e-12 75.1 197 32.5
Hund03274 Selenicereus undatus HOM05D000010 ORTHO05D000302 9.7e-12 74.3 200 30.5
CANSAT56G1408 Cannabis sativa HOM05D000010 ORTHO05D000302 1.3e-11 73.9 218 28.4
TAR636G2089 Trochodendron aralioides HOM05D000010 ORTHO05D000302 1.7e-11 73.6 180 35.6
CANSAT56G4484 Cannabis sativa HOM05D000010 ORTHO05D000302 2.2e-11 73.2 220 28.2
Dinv36352 Davidia involucrata HOM05D009267 ORTHO05D000302 2.2e-11 73.2 202 32.7
Cc00_g08040 Coffea canephora HOM05D000010 ORTHO05D000302 2.8e-11 72.8 181 34.8
Lj8A423G29 Lonicera japonica HOM05D000010 ORTHO05D000302 2.8e-11 72.8 210 31.0
GSVIVG01035554001 Vitis vinifera HOM05D000010 ORTHO05D000302 2.8e-11 72.8 196 31.6
Ah.11g043980 Amaranthus hybridus HOM05D000010 ORTHO05D000302 3.7e-11 72.4 193 33.7
TWI32G0961 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 3.7e-11 72.4 200 32.5
TAR625G0764 Trochodendron aralioides HOM05D000010 ORTHO05D000302 3.7e-11 72.4 182 35.2
QL12p026056 Quercus lobata HOM05D000010 ORTHO05D000302 4.8e-11 72.0 201 32.8
Peaxi162Scf00213g00119 Petunia axillaris HOM05D000010 ORTHO05D000302 6.3e-11 71.6 201 30.3
Atru.chr7.2674 Acer truncatum HOM05D000010 ORTHO05D000302 1.1e-10 70.9 201 32.3
Glyma.06G080200 Glycine max HOM05D000010 ORTHO05D000302 1.1e-10 70.9 205 32.7
PGR042G3178 Punica granatum HOM05D000010 ORTHO05D000302 3.1e-10 69.3 200 31.5
MD15G1100100 Malus domestica HOM05D000010 ORTHO05D000302 4.1e-10 68.9 218 32.1
Oeu059296.1 Olea europaea HOM05D000010 ORTHO05D000302 4.1e-10 68.9 202 31.2
CsaV3_2G031140 Cucumis sativus L. HOM05D000010 ORTHO05D000302 5.3e-10 68.6 211 28.9
Phvul.001G059900 Phaseolus vulgaris HOM05D000010 ORTHO05D000302 5.3e-10 68.6 199 30.2
arahy.Tifrunner.gnm1.ann1.332M63 Arachis hypogaea HOM05D000010 ORTHO05D000302 9.1e-10 67.8 215 29.8
arahy.Tifrunner.gnm1.ann1.WB1HDB Arachis hypogaea HOM05D000010 ORTHO05D000302 9.1e-10 67.8 211 29.9
FvH4_2g36350 Fragaria vesca HOM05D000010 ORTHO05D000302 9.1e-10 67.8 210 31.9
Lsat_1_v5_gn_3_24581 Lactuca sativa HOM05D000010 ORTHO05D000302 9.1e-10 67.8 205 32.7
Nitab4.5_0000919g0050 Nicotiana tabacum HOM05D000010 ORTHO05D000302 9.1e-10 67.8 190 32.6
SalBow4G2352 Salvia bowleyana HOM05D000010 ORTHO05D000302 9.1e-10 67.8 194 33.5
FAN27G3295 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.2e-09 67.4 210 31.4
Gohir.A06G107100 Gossypium hirsutum HOM05D000010 ORTHO05D000302 1.2e-09 67.4 198 30.8
MBI16_g34880_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000302 1.2e-09 67.4 189 33.3
FAN15G0231 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.6e-09 67.0 210 31.4
Lalb_Chr23g0269341 Lupinus albus HOM05D000010 ORTHO05D000302 1.6e-09 67.0 214 31.3
SGA_v2.0_scaffold27G11646 Striga asiatica HOM05D000010 ORTHO05D000302 1.6e-09 67.0 171 33.3
Aqoxy7G02751 Aquilegia oxysepala HOM05D000010 ORTHO05D000302 2.0e-09 66.6 195 32.3
Ca_12824_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000302 3.5e-09 65.9 195 32.3
EL10Ac2g03712 Beta vulgaris HOM05D000010 ORTHO05D000302 4.5e-09 65.5 203 29.6
FAN20G0927 Fragaria x ananassa HOM05D000010 ORTHO05D000302 4.5e-09 65.5 215 33.0
Prupe.1G454900 Prunus persica HOM05D000010 ORTHO05D000302 4.5e-09 65.5 215 30.2
Sc09g0007860 Simmondsia chinensis HOM05D000010 ORTHO05D000302 4.5e-09 65.5 201 31.8
VMungo1309G0880 Vigna mungo HOM05D000010 ORTHO05D000302 4.5e-09 65.5 205 31.2
MELO3C011164.2 Cucumis melo HOM05D000010 ORTHO05D000302 1.0e-08 64.3 214 29.9
RcHm_v2.0_Chr6g0305531 Rosa chinensis HOM05D000010 ORTHO05D000302 1.0e-08 64.3 208 30.3
CiPaw.07G208700 Carya illinoinensis HOM05D000010 ORTHO05D000302 2.9e-08 62.8 205 29.3
CiPaw.08G022100 Carya illinoinensis HOM05D000010 ORTHO05D000302 2.9e-08 62.8 216 30.6
Lalb_Chr11g0064291 Lupinus albus HOM05D000010 ORTHO05D000302 5.0e-08 62.0 207 29.5
Peaxi162Scf00045g00146 Petunia axillaris HOM05D000010 ORTHO05D000302 6.5e-08 61.6 188 32.4
Sed0019215 Sechium edule HOM05D000010 ORTHO05D000302 7.2e-07 58.2 200 28.5
VMungo0647G0672 Vigna mungo HOM05D000010 ORTHO05D000302 2.7e-06 56.2 216 28.2
Nn8g40894 Nelumbo nucifera HOM05D000010 ORTHO05D000302 4.7e-06 55.5 191 28.8
Phvul.009G104400 Phaseolus vulgaris HOM05D000010 ORTHO05D000302 4.7e-06 55.5 208 27.9
Solyc05g010740.2 Solanum lycopersicum HOM05D000010 ORTHO05D000302 4.7e-06 55.5 192 30.7
CSS0030067 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000302 6.1e-06 55.1 234 27.4
AUR62038748 Chenopodium quinoa HOM05D000010 ORTHO05D000302 8.0e-06 54.7 176 29.0
MD08G1121300 Malus domestica HOM05D000010 ORTHO05D000302 8.0e-06 54.7 220 29.5


User provided reference genes

Program Settings