Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27909 Brassica carinata HOM05D000065 ORTHO05D001606 2.9e-30 134.4 61 100.0
Carub.0004s0276 Capsella rubella HOM05D000065 ORTHO05D001606 3.1e-08 61.2 36 72.2
Aa31LG7G13330 Aethionema arabicum HOM05D000065 ORTHO05D001606 5.3e-08 60.5 26 96.2
BcaB06g27907 Brassica carinata HOM05D000065 ORTHO05D001606 5.3e-08 60.5 26 96.2
A04p17940 Brassica napus HOM05D000065 ORTHO05D001606 5.3e-08 60.5 26 96.2
BolC4t26850H Brassica oleracea HOM05D000065 ORTHO05D001606 5.3e-08 60.5 26 96.2
BraA04t17414Z Brassica rapa HOM05D000065 ORTHO05D001606 5.3e-08 60.5 26 96.2
CARHR293150 Cardamine hirsuta HOM05D000065 ORTHO05D001606 5.3e-08 60.5 26 96.2
Thhalv10000195m.g Eutrema salsugineum HOM05D000065 ORTHO05D001606 5.3e-08 60.5 26 96.2
Sp4g02510 Schrenkiella parvula HOM05D000065 ORTHO05D001606 5.3e-08 60.5 26 96.2
THA.LOC104819825 Tarenaya hassleriana HOM05D000065 ORTHO05D001606 6.9e-08 60.1 30 83.3
BcaC07g40982 Brassica carinata HOM05D000065 ORTHO05D001606 9.1e-08 59.7 26 96.2
A09p56860 Brassica napus HOM05D000065 ORTHO05D001606 9.1e-08 59.7 26 96.2
C08p39830 Brassica napus HOM05D000065 ORTHO05D001606 9.1e-08 59.7 26 96.2
BolC8t51555H Brassica oleracea HOM05D000065 ORTHO05D001606 9.1e-08 59.7 26 96.2
BraA09t41078Z Brassica rapa HOM05D000065 ORTHO05D001606 9.1e-08 59.7 26 96.2
Duzib264G0689 Durio zibethinus HOM05D000065 ORTHO05D001606 1.5e-07 58.9 32 75.0
HanXRQChr14g0448341 Helianthus annuus HOM05D000065 ORTHO05D001606 1.5e-07 58.9 32 71.9
vmacro17901 Vaccinium macrocarpon HOM05D000065 ORTHO05D001606 1.5e-07 58.9 34 70.6
Nitab4.5_0001014g0090 Nicotiana tabacum HOM05D000065 ORTHO05D001606 2.0e-07 58.5 26 96.2
Ciclev10025863m.g Citrus clementina HOM05D000065 ORTHO05D001606 2.6e-07 58.2 34 67.6
COL.COLO4_11325 Corchorus olitorius HOM05D000065 ORTHO05D001606 2.6e-07 58.2 32 75.0
Manes.13G130400 Manihot esculenta HOM05D000065 ORTHO05D001606 2.6e-07 58.2 34 67.6
Nitab4.5_0000108g0260 Nicotiana tabacum HOM05D000065 ORTHO05D001606 2.6e-07 58.2 26 96.2
AL4G13530 Arabidopsis lyrata HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 88.5
AT2G23540 Arabidopsis thaliana HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 88.5
CAN.G836.32 Capsicum annuum HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 92.3
ECA238G3014 Erigeron canadensis HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 88.5
Glyma.16G144900 Glycine max HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 88.5
HanXRQChr07g0199951 Helianthus annuus HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 88.5
Lsat_1_v5_gn_2_86961 Lactuca sativa HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 88.5
Peaxi162Scf00993g00016 Petunia axillaris HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 92.3
Solyc02g090210.3 Solanum lycopersicum HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 92.3
Sopen02g034900 Solanum pennellii HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 92.3
PGSC0003DMG400010076 Solanum tuberosum HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 92.3
VMungo0251G3492 Vigna mungo HOM05D000065 ORTHO05D001606 3.4e-07 57.8 26 88.5
C04p52850 Brassica napus HOM05D000065 ORTHO05D001606 4.5e-07 57.4 26 92.3
TWI73G1106 Tripterygium wilfordii HOM05D000065 ORTHO05D001606 4.5e-07 57.4 34 67.6
HanXRQChr05g0153221 Helianthus annuus HOM05D000065 ORTHO05D001606 5.9e-07 57.0 38 60.5
Sc07g0000120 Simmondsia chinensis HOM05D000065 ORTHO05D001606 5.9e-07 57.0 32 71.9
Atru.chr3.450 Acer truncatum HOM05D000065 ORTHO05D001606 7.7e-07 56.6 32 68.8
Haze_15191 Corylus avellana HOM05D000065 ORTHO05D001606 7.7e-07 56.6 26 88.5
Gohir.A12G068400 Gossypium hirsutum HOM05D000065 ORTHO05D001606 7.7e-07 56.6 26 88.5
Gohir.D12G068175 Gossypium hirsutum HOM05D000065 ORTHO05D001606 7.7e-07 56.6 26 88.5
Gorai.008G071700 Gossypium raimondii HOM05D000065 ORTHO05D001606 7.7e-07 56.6 26 88.5
Phvul.003G248600 Phaseolus vulgaris HOM05D000065 ORTHO05D001606 7.7e-07 56.6 26 84.6
Duzib187G1765 Durio zibethinus HOM05D000065 ORTHO05D001606 1.0e-06 56.2 32 68.8
PGR119G0600 Punica granatum HOM05D000065 ORTHO05D001606 1.0e-06 56.2 32 71.9
HPP92_014518 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.0e-06 56.2 34 64.7
Actinidia36521 Actinidia chinensis HOM05D000065 ORTHO05D001606 1.3e-06 55.8 26 88.5
CANSAT01G1781 Cannabis sativa HOM05D000065 ORTHO05D001606 1.3e-06 55.8 26 84.6
MELO3C020928.2 Cucumis melo HOM05D000065 ORTHO05D001606 1.3e-06 55.8 39 59.0
CsaV3_2G017250 Cucumis sativus L. HOM05D000065 ORTHO05D001606 1.3e-06 55.8 39 59.0
Lj4g0018157 Lotus japonicus HOM05D000065 ORTHO05D001606 1.3e-06 55.8 26 88.5
Lj4g0022178 Lotus japonicus HOM05D000065 ORTHO05D001606 1.3e-06 55.8 26 88.5
Prupe.7G142600 Prunus persica HOM05D000065 ORTHO05D001606 1.3e-06 55.8 26 88.5
Thecc.01G047800 Theobroma cacao HOM05D000065 ORTHO05D001606 1.3e-06 55.8 26 88.5
Actinidia12079 Actinidia chinensis HOM05D000065 ORTHO05D001606 1.7e-06 55.5 26 84.6
arahy.Tifrunner.gnm1.ann1.VX313A Arachis hypogaea HOM05D000065 ORTHO05D001606 1.7e-06 55.5 26 84.6
Cc07_g05540 Coffea canephora HOM05D000065 ORTHO05D001606 1.7e-06 55.5 32 71.9
DCAR_025686 Daucus carota HOM05D000065 ORTHO05D001606 1.7e-06 55.5 26 84.6
Duzib147G0538 Durio zibethinus HOM05D000065 ORTHO05D001606 1.7e-06 55.5 26 84.6
Eucgr.H01970 Eucalyptus grandis HOM05D000065 ORTHO05D001606 1.7e-06 55.5 26 88.5
Glyma.02G062600 Glycine max HOM05D000065 ORTHO05D001606 1.7e-06 55.5 26 84.6
Oeu004891.1 Olea europaea HOM05D000065 ORTHO05D001606 1.7e-06 55.5 26 84.6
Potri.007G036300 Populus trichocarpa HOM05D000065 ORTHO05D001606 1.7e-06 55.5 34 61.8
PGR102G1176 Punica granatum HOM05D000065 ORTHO05D001606 1.7e-06 55.5 32 71.9
QL06p043813 Quercus lobata HOM05D000065 ORTHO05D001606 1.7e-06 55.5 26 84.6
TPR.G30335 Trifolium pratense HOM05D000065 ORTHO05D001606 1.7e-06 55.5 26 84.6
Aqoxy6G00920 Aquilegia oxysepala HOM05D000065 ORTHO05D001606 2.2e-06 55.1 34 61.8
RcHm_v2.0_Chr2g0103741 Rosa chinensis HOM05D000065 ORTHO05D001606 2.2e-06 55.1 26 84.6
CSS0006570 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D001606 2.9e-06 54.7 26 84.6
CSS0013333 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D001606 2.9e-06 54.7 26 88.5
CiPaw.01G026700 Carya illinoinensis HOM05D000065 ORTHO05D001606 2.9e-06 54.7 26 84.6
FvH4_1g14780 Fragaria vesca HOM05D000065 ORTHO05D001606 2.9e-06 54.7 26 84.6
FAN19G2479 Fragaria x ananassa HOM05D000065 ORTHO05D001606 2.9e-06 54.7 26 84.6
FAN23G2005 Fragaria x ananassa HOM05D000065 ORTHO05D001606 2.9e-06 54.7 26 84.6
FAN26G2797 Fragaria x ananassa HOM05D000065 ORTHO05D001606 2.9e-06 54.7 26 84.6
FAN28G0521 Fragaria x ananassa HOM05D000065 ORTHO05D001606 2.9e-06 54.7 26 84.6
Hund13587 Selenicereus undatus HOM05D000065 ORTHO05D001606 2.9e-06 54.7 32 71.9
MSTRG.3407 Avicennia marina HOM05D000065 ORTHO05D001606 3.8e-06 54.3 26 84.6
AUR62001977 Chenopodium quinoa HOM05D000065 ORTHO05D001606 3.8e-06 54.3 26 80.8
AUR62003827 Chenopodium quinoa HOM05D000065 ORTHO05D001606 3.8e-06 54.3 26 80.8
Medtr8g079050 Medicago truncatula HOM05D000065 ORTHO05D001606 3.8e-06 54.3 26 80.8
Rhsim08G0106500 Rhododendron simsii HOM05D000065 ORTHO05D001606 3.8e-06 54.3 26 84.6
SalBow1G1257 Salvia bowleyana HOM05D000065 ORTHO05D001606 3.8e-06 54.3 26 84.6
MSTRG.23796 Avicennia marina HOM05D000065 ORTHO05D001606 5.0e-06 53.9 26 80.8
Gohir.A10G093600 Gossypium hirsutum HOM05D000065 ORTHO05D001606 5.0e-06 53.9 26 80.8
Gohir.D10G094500 Gossypium hirsutum HOM05D000065 ORTHO05D001606 5.0e-06 53.9 26 80.8
Gorai.011G103900 Gossypium raimondii HOM05D000065 ORTHO05D001606 5.0e-06 53.9 26 80.8
Oeu032934.1 Olea europaea HOM05D000065 ORTHO05D001606 5.0e-06 53.9 26 80.8
SGA_v2.0_scaffold15G07227 Striga asiatica HOM05D000065 ORTHO05D001606 5.0e-06 53.9 26 80.8
ATR0733G173 Amborella trichopoda HOM05D000065 ORTHO05D001606 6.5e-06 53.5 26 76.9
Cpa.g.sc1620.2 Carica papaya HOM05D000065 ORTHO05D001606 8.5e-06 53.1 32 62.5
PSO170G3945 Papaver somniferum HOM05D000065 ORTHO05D001606 8.5e-06 53.1 26 80.8
PSO210G2376 Papaver somniferum HOM05D000065 ORTHO05D001606 8.5e-06 53.1 26 80.8
Rhsim10G0122200 Rhododendron simsii HOM05D000065 ORTHO05D001606 8.5e-06 53.1 26 80.8
TAR376G0569 Trochodendron aralioides HOM05D000065 ORTHO05D001606 8.5e-06 53.1 26 80.8
vmacro05289 Vaccinium macrocarpon HOM05D000065 ORTHO05D001606 8.5e-06 53.1 26 80.8


User provided reference genes

Program Settings