Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27855 Brassica carinata HOM05D001206 ORTHO05D005935 1.8e-60 235.7 118 100.0
BcaB07g32014 Brassica carinata HOM05D001206 ORTHO05D005935 3.8e-34 148.3 126 66.7
BcaB07g32016 Brassica carinata HOM05D001206 ORTHO05D005935 3.8e-34 148.3 126 66.7
C05p18490 Brassica napus HOM05D001206 ORTHO05D005935 3.8e-34 148.3 126 66.7
BcaC03g15127 Brassica carinata HOM05D001206 ORTHO05D005935 9.2e-33 143.7 120 67.5
BcaC04g22258 Brassica carinata HOM05D001206 ORTHO05D005935 8.4e-26 120.6 134 55.2
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 2.1e-24 115.9 258 36.0
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 2.3e-23 112.5 67 88.1
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 2.3e-23 112.5 67 88.1
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 3.0e-23 112.1 67 85.1
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 5.1e-23 111.3 258 35.3
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 1.1e-22 110.2 67 85.1
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 1.5e-22 109.8 67 85.1
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 1.9e-22 109.4 258 34.9
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 1.9e-22 109.4 258 34.9
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 4.3e-22 108.2 67 83.6
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 4.3e-22 108.2 65 84.6
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 4.3e-22 108.2 67 85.1
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 7.3e-22 107.5 67 83.6
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 3.6e-21 105.1 64 82.8
BcaC05g25894 Brassica carinata HOM05D001206 ORTHO05D005935 8.1e-21 104.0 66 83.3
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 3.1e-20 102.1 66 74.2
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 1.2e-19 100.1 64 76.6
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 3.4e-19 98.6 64 75.0
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 4.5e-19 98.2 64 73.4
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 4.5e-19 98.2 64 73.4
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 4.5e-19 98.2 64 73.4
Haze_13465 Corylus avellana HOM05D001206 ORTHO05D005935 5.8e-19 97.8 64 73.4
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 5.8e-19 97.8 64 73.4
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 9.9e-19 97.1 62 75.8
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 9.9e-19 97.1 64 73.4
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 9.9e-19 97.1 61 80.3
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 1.7e-18 96.3 62 74.2
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 1.7e-18 96.3 65 72.3
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 1.7e-18 96.3 65 72.3
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 1.7e-18 96.3 65 72.3
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 1.7e-18 96.3 61 78.7
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 1.7e-18 96.3 62 77.4
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 2.2e-18 95.9 62 77.4
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 2.9e-18 95.5 66 69.7
BolC3t19603H Brassica oleracea HOM05D000152 ORTHO05D000609 3.8e-18 95.1 67 79.1
BcaC01g01682 Brassica carinata HOM05D007004 ORTHO05D009040 4.9e-18 94.7 67 79.1
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 6.4e-18 94.4 64 70.3
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 6.4e-18 94.4 62 75.8
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 8.4e-18 94.0 62 75.8
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 1.1e-17 93.6 64 70.3
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 1.4e-17 93.2 62 75.8
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 1.4e-17 93.2 62 74.2
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 1.4e-17 93.2 62 74.2
Gorai.N005800 Gossypium raimondii HOM05D001206 ORTHO05D005935 1.9e-17 92.8 95 54.7
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 1.9e-17 92.8 62 75.8
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 2.4e-17 92.4 62 72.6
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 2.4e-17 92.4 62 72.6
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 3.2e-17 92.0 62 74.2
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 3.2e-17 92.0 62 71.0
ECA233G3159 Erigeron canadensis HOM05D001206 ORTHO05D005935 3.2e-17 92.0 62 71.0
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 4.2e-17 91.7 62 71.0
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 5.4e-17 91.3 64 67.2
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 7.1e-17 90.9 62 71.0
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 7.1e-17 90.9 66 71.2
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 9.3e-17 90.5 62 72.6
BcaB07g30259 Brassica carinata HOM05D001206 ORTHO05D005935 1.2e-16 90.1 57 78.9
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 1.6e-16 89.7 62 69.4
Cc05_g09120 Coffea canephora HOM05D001206 ORTHO05D005935 1.6e-16 89.7 62 72.6
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 1.6e-16 89.7 62 69.4
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 2.1e-16 89.4 62 69.4
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 2.1e-16 89.4 62 69.4
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 2.1e-16 89.4 62 72.6
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 2.7e-16 89.0 62 67.7
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 2.7e-16 89.0 62 67.7
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 3.5e-16 88.6 62 69.4
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 6.0e-16 87.8 62 71.0
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 7.9e-16 87.4 62 72.6
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.0e-15 87.0 62 72.6
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 1.0e-15 87.0 62 69.4
CAN.G1191.9 Capsicum annuum HOM05D001206 ORTHO05D005935 1.3e-15 86.7 64 65.6
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 1.3e-15 86.7 62 72.6
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 1.8e-15 86.3 62 67.7
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 3.0e-15 85.5 55 78.2
Actinidia11180 Actinidia chinensis HOM05D001206 ORTHO05D005935 3.9e-15 85.1 62 69.4
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 3.9e-15 85.1 62 66.1
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 5.1e-15 84.7 59 69.5
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 5.1e-15 84.7 62 66.1
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 5.1e-15 84.7 62 66.1
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 6.7e-15 84.3 65 63.1
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 6.7e-15 84.3 59 72.9
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 6.7e-15 84.3 62 66.1
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 8.7e-15 84.0 62 66.1
VMungo0540G0597 Vigna mungo HOM05D001206 ORTHO05D005935 8.7e-15 84.0 62 67.7
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 1.1e-14 83.6 62 67.7
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 1.5e-14 83.2 61 65.6
TPR.G13547 Trifolium pratense HOM05D001206 ORTHO05D005935 2.5e-14 82.4 62 66.1
Pp3c27_1950 Physcomitrium patens HOM05D001206 ORTHO05D005935 7.4e-14 80.9 104 48.1
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 9.6e-14 80.5 68 66.2
Nitab4.5_0002027g0090 Nicotiana tabacum HOM05D001206 ORTHO05D005935 1.3e-13 80.1 71 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 2.8e-13 79.0 57 66.7
Pp3c16_16670 Physcomitrium patens HOM05D001206 ORTHO05D005935 3.7e-13 78.6 62 62.9
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 3.7e-13 78.6 88 53.4
HPP92_002350 Vanilla planifolia HOM05D001206 ORTHO05D005935 6.2e-13 77.8 59 67.8
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 3.1e-12 75.5 65 61.5
SEGI_06909 Sequoiadendron giganteum HOM05D001206 ORTHO05D005935 3.1e-12 75.5 60 58.3
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 4.5e-11 71.6 62 56.5
DCAR_013291 Daucus carota HOM05D001206 ORTHO05D005935 1.3e-10 70.1 62 59.7
Hma1.2p1_0178F.1_g078230 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 1.7e-10 69.7 80 51.2
CBR_g12438 Chara braunii HOM05D001206 ORTHO05D005935 4.9e-10 68.2 51 66.7
MBI15_g31580_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 5.5e-09 64.7 54 66.7
Lj1A587G24 Lonicera japonica HOM05D001206 ORTHO05D005935 7.1e-09 64.3 41 78.0
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 1.2e-08 63.5 40 80.0
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 2.7e-08 62.4 38 78.9
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 2.7e-08 62.4 41 70.7
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.5e-08 62.0 59 59.3
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 4.6e-08 61.6 38 78.9
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.0e-07 60.5 42 69.0
Cre10.g439400 Chlamydomonas reinhardtii HOM05D001206 ORTHO05D005935 2.3e-07 59.3 54 57.4


User provided reference genes

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