Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27838 Brassica carinata HOM05D002093 ORTHO05D008902 6.1e-114 414.1 196 100.0
BcaB06g27839 Brassica carinata HOM05D002093 ORTHO05D008902 6.1e-114 414.1 196 100.0
Sp4g01800 Schrenkiella parvula HOM05D002093 ORTHO05D008902 1.7e-87 326.2 197 78.2
C04p52110 Brassica napus HOM05D002093 ORTHO05D008902 1.4e-86 323.2 197 81.2
A04p17300 Brassica napus HOM05D002093 ORTHO05D008902 2.4e-86 322.4 196 81.6
BraA04t17358Z Brassica rapa HOM05D002093 ORTHO05D008902 2.4e-86 322.4 196 81.6
BolC4t26785H Brassica oleracea HOM05D002093 ORTHO05D008902 7.0e-86 320.9 199 79.9
A09p57230 Brassica napus HOM05D002093 ORTHO05D008902 2.6e-72 275.8 196 69.9
BraA09t41116Z Brassica rapa HOM05D002093 ORTHO05D008902 2.6e-72 275.8 196 69.9
BcaC07g41023 Brassica carinata HOM05D002093 ORTHO05D008902 1.3e-71 273.5 196 68.9
BcaC07g41024 Brassica carinata HOM05D002093 ORTHO05D008902 1.3e-71 273.5 196 68.9
C08p40270 Brassica napus HOM05D002093 ORTHO05D008902 1.3e-71 273.5 196 68.9
BolC8t51595H Brassica oleracea HOM05D002093 ORTHO05D008902 1.3e-71 273.5 196 68.9
BcaC02g08603 Brassica carinata HOM05D002093 ORTHO05D008902 6.2e-66 254.6 199 67.8
Thhalv10000248m.g Eutrema salsugineum HOM05D002093 ORTHO05D008902 1.8e-65 253.1 195 69.2
AL4G12320 Arabidopsis lyrata HOM05D002093 ORTHO05D008902 3.5e-61 238.8 190 66.8
AT2G22790 Arabidopsis thaliana HOM05D002093 ORTHO05D008902 2.9e-55 219.2 191 62.8
CARHR114070 Cardamine hirsuta HOM05D002093 ORTHO05D008902 3.2e-54 215.7 189 58.7
Carub.0004s0192 Capsella rubella HOM05D002093 ORTHO05D008902 8.1e-50 201.1 192 57.3
Aa31LG7G14020 Aethionema arabicum HOM05D002093 ORTHO05D008902 7.6e-40 167.9 226 47.3
THA.LOC104824931 Tarenaya hassleriana HOM05D002093 ORTHO05D008902 1.4e-38 163.7 225 43.1
Cpa.g.sc129.45 Carica papaya HOM05D002093 ORTHO05D008902 1.8e-33 146.7 251 38.6
Thecc.01G080100 Theobroma cacao HOM05D002093 ORTHO05D008902 1.2e-32 144.1 153 48.4
Duzib187G0412 Durio zibethinus HOM05D002093 ORTHO05D008902 9.9e-32 141.0 151 48.3
Duzib147G0431 Durio zibethinus HOM05D002093 ORTHO05D008902 3.8e-31 139.0 153 45.1
Manes.13G106600 Manihot esculenta HOM05D002093 ORTHO05D008902 1.4e-30 137.1 146 50.7
Gorai.003G034100 Gossypium raimondii HOM05D002093 ORTHO05D008902 1.9e-30 136.7 146 47.3
Gohir.A02G147900 Gossypium hirsutum HOM05D002093 ORTHO05D008902 2.1e-29 133.3 149 47.7
Ciclev10025875m.g Citrus clementina HOM05D002093 ORTHO05D008902 3.5e-29 132.5 146 47.3
Manes.12G119400 Manihot esculenta HOM05D002093 ORTHO05D008902 7.9e-29 131.3 147 50.3
Gohir.D03G032500 Gossypium hirsutum HOM05D002093 ORTHO05D008902 1.0e-28 131.0 146 45.9
Gohir.A11G210600 Gossypium hirsutum HOM05D002093 ORTHO05D008902 1.3e-28 130.6 150 46.0
Gohir.D11G212500 Gossypium hirsutum HOM05D002093 ORTHO05D008902 1.3e-28 130.6 150 46.7
Atru.chr3.1091 Acer truncatum HOM05D002093 ORTHO05D008902 6.7e-28 128.3 151 47.7
Gorai.007G228500 Gossypium raimondii HOM05D002093 ORTHO05D008902 6.7e-28 128.3 150 46.0
ClCG01G017960 Citrullus lanatus HOM05D002093 ORTHO05D008902 4.3e-27 125.6 141 44.0
FvH4_1g18640 Fragaria vesca HOM05D002093 ORTHO05D008902 5.6e-27 125.2 130 51.5
Potri.007G008900 Populus trichocarpa HOM05D002093 ORTHO05D008902 5.6e-27 125.2 145 46.2
CsaV3_6G044490 Cucumis sativus L. HOM05D002093 ORTHO05D008902 1.3e-26 124.0 141 46.8
FAN19G0329 Fragaria x ananassa HOM05D002093 ORTHO05D008902 1.3e-26 124.0 130 51.5
Dinv26981 Davidia involucrata HOM05D000349 ORTHO05D010637 2.8e-26 122.9 142 49.3
Prupe.6G212900 Prunus persica HOM05D002093 ORTHO05D008902 6.2e-26 121.7 132 49.2
Sabra07G0006900 Salix brachista HOM05D002093 ORTHO05D008902 8.2e-26 121.3 153 46.4
TWI74G1276 Tripterygium wilfordii HOM05D002093 ORTHO05D008902 1.8e-25 120.2 142 46.5
Cfa006801 Carpinus fangiana HOM05D002093 ORTHO05D008902 2.4e-25 119.8 137 47.4
FAN28G2907 Fragaria x ananassa HOM05D002093 ORTHO05D008902 3.1e-25 119.4 130 50.8
COL.COLO4_11650 Corchorus olitorius HOM05D002093 ORTHO05D008902 4.0e-25 119.0 139 48.2
Sed0013148 Sechium edule HOM05D002093 ORTHO05D008902 5.3e-25 118.6 142 43.0
Haze_03959 Corylus avellana HOM05D002093 ORTHO05D008902 6.9e-25 118.2 137 46.0
FAN23G0936 Fragaria x ananassa HOM05D002093 ORTHO05D008902 6.9e-25 118.2 130 50.0
Hma1.2p1_1147F.1_g261550 Hydrangea macrophylla HOM05D002093 ORTHO05D008902 1.5e-24 117.1 138 46.4
MD02G1194000 Malus domestica HOM05D002093 ORTHO05D008902 2.6e-24 116.3 145 46.9
DCAR_010774 Daucus carota HOM05D002093 ORTHO05D008902 4.5e-24 115.5 151 43.0
FAN26G1567 Fragaria x ananassa HOM05D002093 ORTHO05D008902 4.5e-24 115.5 130 50.0
TWI53G2085 Tripterygium wilfordii HOM05D002093 ORTHO05D008902 1.0e-23 114.4 143 44.1
Migut.H00310 Erythranthe guttata HOM05D002093 ORTHO05D008902 8.4e-23 111.3 149 43.0
MSTRG.3493 Avicennia marina HOM05D002093 ORTHO05D008902 1.1e-22 110.9 155 40.6
CiPaw.07G040100 Carya illinoinensis HOM05D002093 ORTHO05D008902 2.5e-22 109.8 137 43.8
MSTRG.2795 Avicennia marina HOM05D002093 ORTHO05D008902 4.2e-22 109.0 150 41.3
RcHm_v2.0_Chr2g0109461 Rosa chinensis HOM05D002093 ORTHO05D008902 4.2e-22 109.0 130 48.5
PGR004G2617 Punica granatum HOM05D002093 ORTHO05D008902 1.2e-21 107.5 160 38.8
SalBow3G1317 Salvia bowleyana HOM05D002093 ORTHO05D008902 1.2e-21 107.5 134 44.8
SalBow3G1471 Salvia bowleyana HOM05D002093 ORTHO05D008902 1.2e-21 107.5 134 44.8
QL06p038145 Quercus lobata HOM05D002093 ORTHO05D008902 3.5e-21 105.9 127 48.0
MBI16_g16854_MAGBIO Magnolia biondii HOM05D002093 ORTHO05D008902 4.6e-21 105.5 140 42.1
TAR381G1053 Trochodendron aralioides HOM05D002093 ORTHO05D008902 4.6e-21 105.5 151 40.4
Solyc02g063510.1 Solanum lycopersicum HOM05D002093 ORTHO05D008902 1.0e-20 104.4 143 44.1
Sopen02g014590 Solanum pennellii HOM05D002093 ORTHO05D008902 1.0e-20 104.4 143 44.1
PGSC0003DMG400010402 Solanum tuberosum HOM05D002093 ORTHO05D008902 2.3e-20 103.2 150 43.3
Nitab4.5_0000036g0300 Nicotiana tabacum HOM05D002093 ORTHO05D008902 3.9e-20 102.4 145 42.8
SGA_v2.0_scaffold121G33090 Striga asiatica HOM05D002093 ORTHO05D008902 9.7e-19 97.8 145 40.7
EL10Ac2g02909 Beta vulgaris HOM05D002093 ORTHO05D008902 1.3e-18 97.4 145 39.3
arahy.Tifrunner.gnm1.ann1.HI299V Arachis hypogaea HOM05D002093 ORTHO05D008902 2.2e-18 96.7 152 35.5
arahy.Tifrunner.gnm1.ann1.JB98L2 Arachis hypogaea HOM05D002093 ORTHO05D008902 2.2e-18 96.7 152 35.5
AUR62007964 Chenopodium quinoa HOM05D002093 ORTHO05D008902 3.7e-18 95.9 128 41.4
Ca_24662_v3 Cicer arietinum L. HOM05D002093 ORTHO05D008902 3.7e-18 95.9 137 40.9
VMungo1215G1020 Vigna mungo HOM05D002093 ORTHO05D008902 8.2e-18 94.7 127 41.7
Lj2P425T23 Lonicera japonica HOM05D002093 ORTHO05D008902 1.8e-17 93.6 128 42.2
Nn6g32058 Nelumbo nucifera HOM05D002093 ORTHO05D008902 2.4e-17 93.2 129 42.6
Ah.03g139610 Amaranthus hybridus HOM05D002093 ORTHO05D008902 3.1e-17 92.8 162 34.6
unitig_0.g491 Utricularia gibba HOM05D002093 ORTHO05D008902 3.1e-17 92.8 151 38.4
Glyma.01G197300 Glycine max HOM05D002093 ORTHO05D008902 5.3e-17 92.0 127 41.7
CAN.G252.5 Capsicum annuum HOM05D002093 ORTHO05D008902 1.2e-16 90.9 145 40.0
Lalb_Chr05g0213891 Lupinus albus HOM05D002093 ORTHO05D008902 2.6e-16 89.7 125 40.8
Glyma.11G044400 Glycine max HOM05D002093 ORTHO05D008902 3.4e-16 89.4 126 41.3
TAR625G1203 Trochodendron aralioides HOM05D002093 ORTHO05D008902 3.4e-16 89.4 139 39.6
Lj2g0024764 Lotus japonicus HOM05D002093 ORTHO05D008902 5.9e-16 88.6 123 42.3
THA.LOC104804192 Tarenaya hassleriana HOM05D002093 ORTHO05D008902 7.7e-16 88.2 145 42.8
Lsat_1_v5_gn_2_81601 Lactuca sativa HOM05D002093 ORTHO05D008902 1.0e-15 87.8 145 38.6
Nn5g30712 Nelumbo nucifera HOM05D002093 ORTHO05D008902 2.9e-15 86.3 153 37.3
HanXRQChr07g0203781 Helianthus annuus HOM05D002093 ORTHO05D008902 1.4e-14 84.0 152 38.2
Nitab4.5_0006354g0010 Nicotiana tabacum HOM05D002093 ORTHO05D008902 1.4e-14 84.0 126 42.9
Medtr5g014810 Medicago truncatula HOM05D002093 ORTHO05D008902 2.5e-14 83.2 136 39.7
ECA238G0343 Erigeron canadensis HOM05D002093 ORTHO05D008902 3.2e-14 82.8 257 32.3
Aqoxy6G01521 Aquilegia oxysepala HOM05D002093 ORTHO05D008902 4.2e-14 82.4 145 33.8
Phvul.002G008100 Phaseolus vulgaris HOM05D002093 ORTHO05D008902 7.2e-14 81.6 126 39.7
HPP92_022489 Vanilla planifolia HOM05D002093 ORTHO05D008902 4.6e-13 79.0 137 36.5
Psat0s791g0040 Pisum sativum HOM05D002093 ORTHO05D008902 1.8e-12 77.0 131 38.9
Rhsim10G0087200 Rhododendron simsii HOM05D002093 ORTHO05D008902 8.8e-12 74.7 183 32.2
MD15G1304100 Malus domestica HOM05D002093 ORTHO05D008902 2.0e-11 73.6 64 54.7
vmacro05430 Vaccinium macrocarpon HOM05D002093 ORTHO05D008902 3.3e-11 72.8 194 31.4
TPR.G28864 Trifolium pratense HOM05D002093 ORTHO05D008902 5.7e-11 72.0 129 38.0
PSO541G4191 Papaver somniferum HOM05D002093 ORTHO05D008902 1.7e-10 70.5 137 30.7
ATR0767G224 Amborella trichopoda HOM05D002093 ORTHO05D008902 2.2e-10 70.1 139 30.2
CANSAT01G2701 Cannabis sativa HOM05D002093 ORTHO05D008902 2.2e-10 70.1 89 43.8
Eucgr.I00637 Eucalyptus grandis HOM05D002093 ORTHO05D008902 2.2e-10 70.1 81 48.1
Peaxi162Scf00118g00127 Petunia axillaris HOM05D002093 ORTHO05D008902 2.2e-10 70.1 116 36.2
Peaxi162Scf00118g01313 Petunia axillaris HOM05D002093 ORTHO05D008902 2.8e-10 69.7 124 36.3
SMO198G0091 Selaginella moellendorffii HOM05D002093 ORTHO05D003877 5.0e-07 58.9 165 27.3
Lj4P170T16 Lonicera japonica HOM05D002093 ORTHO05D008902 8.5e-07 58.2 67 46.3
unitig_899.g14664 Utricularia gibba HOM05D002093 ORTHO05D003877 8.5e-07 58.2 147 30.6
Peaxi162Scf00943g00003 Petunia axillaris HOM05D002093 ORTHO05D008902 1.1e-06 57.8 199 26.1
Sed0009898 Sechium edule HOM05D002093 ORTHO05D003877 1.1e-06 57.8 136 29.4
MSTRG.3425 Avicennia marina HOM05D002093 ORTHO05D003877 3.2e-06 56.2 161 28.0
CDE04G2094 Ceratophyllum demersum HOM05D002093 ORTHO05D003877 9.4e-06 54.7 163 28.2


User provided reference genes

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