Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 0.0e+00 1094.7 533 100.0
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 1.6e-281 972.2 533 89.5
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 1.6e-281 972.2 533 89.5
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 1.3e-280 969.1 533 89.1
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 8.7e-280 966.5 533 88.9
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 4.7e-278 960.7 533 88.0
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 2.6e-268 928.3 521 86.8
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 4.5e-268 927.5 525 85.1
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 1.8e-264 915.6 524 84.5
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 4.0e-261 904.4 525 82.1
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.4e-258 895.2 533 82.6
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.5e-242 842.0 533 78.2
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 6.1e-233 810.8 524 73.9
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 1.4e-232 809.7 530 75.1
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 1.2e-217 760.0 542 68.3
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 2.7e-217 758.8 538 67.3
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 2.4e-213 745.7 539 67.7
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 5.9e-212 741.1 516 68.8
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 5.9e-212 741.1 515 68.9
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.0e-211 740.3 536 65.9
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 1.5e-210 736.5 535 68.2
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.5e-210 735.7 536 67.9
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 5.5e-210 734.6 533 66.2
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 5.5e-210 734.6 543 66.3
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.2e-209 733.4 547 66.9
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 6.1e-209 731.1 533 66.6
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 6.1e-209 731.1 550 65.5
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 1.4e-208 729.9 536 67.5
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 1.8e-208 729.6 477 71.5
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 5.2e-208 728.0 543 65.2
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.8e-208 727.6 545 66.4
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 8.8e-208 727.2 539 65.7
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 3.4e-207 725.3 490 70.2
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 5.7e-207 724.5 512 67.6
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.3e-206 721.1 546 67.0
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 8.3e-206 720.7 539 65.5
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 1.4e-205 719.9 542 64.6
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.4e-205 719.9 512 67.0
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 1.4e-205 719.9 528 66.1
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 3.1e-205 718.8 531 66.5
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 9.1e-205 717.2 504 67.5
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 2.0e-204 716.1 516 67.6
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 5.9e-204 714.5 532 68.4
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 5.0e-203 711.4 456 72.6
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 2.1e-201 706.1 526 66.7
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 4.7e-201 704.9 459 70.6
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 1.0e-200 703.7 461 71.8
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 1.8e-200 703.0 470 70.0
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 6.8e-200 701.0 461 71.6
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.5e-199 699.9 455 71.9
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 4.4e-199 698.4 464 69.2
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 2.2e-198 696.0 464 69.0
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 8.3e-198 694.1 464 69.2
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.1e-197 691.8 449 72.4
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 5.4e-197 691.4 512 65.4
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 9.2e-197 690.6 492 66.1
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 4.5e-196 688.3 499 66.1
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 5.9e-196 688.0 422 75.4
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 7.8e-196 687.6 490 67.6
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.5e-194 683.3 488 67.2
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 4.3e-194 681.8 438 73.1
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 7.3e-194 681.0 486 66.9
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 2.1e-193 679.5 470 67.7
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 3.6e-193 678.7 481 66.9
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 1.0e-192 677.2 513 64.5
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 1.4e-192 676.8 513 63.5
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.8e-192 676.4 486 65.8
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 3.4e-191 672.2 461 67.9
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 7.5e-191 671.0 481 66.7
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 9.8e-191 670.6 488 66.4
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 2.2e-190 669.5 488 66.4
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 1.4e-189 666.8 490 65.5
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.4e-189 666.8 422 73.7
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.9e-189 666.4 422 74.2
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 2.4e-189 666.0 458 67.7
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 2.4e-189 666.0 485 65.2
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.2e-189 665.6 437 71.9
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 9.2e-189 664.1 474 66.2
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 4.3e-186 655.2 478 66.1
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 1.2e-185 653.7 540 60.0
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 2.1e-185 652.9 458 66.2
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 5.2e-184 648.3 416 71.9
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 2.6e-183 646.0 463 65.4
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 4.4e-183 645.2 459 66.2
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.4e-181 639.4 428 70.3
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 3.2e-181 639.0 461 66.6
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.3e-179 632.9 440 66.8
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 6.6e-179 631.3 487 62.8
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 8.6e-179 630.9 418 71.3
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 5.2e-176 621.7 402 71.6
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 2.6e-175 619.4 456 63.4
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 4.4e-175 618.6 480 60.4
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 2.4e-165 586.3 416 65.9
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 1.1e-160 570.9 385 70.4
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 3.2e-157 559.3 348 75.9
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 7.1e-149 531.6 445 56.4
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 3.7e-145 519.2 460 53.7
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 9.3e-141 504.6 469 52.2
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 7.9e-132 474.9 528 48.5
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 1.3e-131 474.2 343 65.0
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 3.1e-120 436.4 314 62.1
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.0e-119 433.7 420 52.6
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 3.0e-107 393.3 446 48.4
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 2.6e-103 380.2 472 43.2
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 5.9e-103 379.0 294 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 4.0e-99 366.3 444 42.8
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.4e-96 357.1 306 57.2
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.7e-94 350.9 199 79.4
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 1.4e-91 341.3 463 39.5
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 8.3e-81 305.4 234 63.7
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 5.6e-77 292.7 440 37.7
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 4.7e-76 289.7 169 76.3
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.3e-70 270.8 261 54.8
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 6.8e-67 259.2 150 79.3
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 5.8e-66 256.1 222 58.1
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.3e-65 255.0 150 78.0
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 3.9e-62 243.4 216 55.1
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.4e-43 181.0 405 31.4
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 9.0e-43 179.1 134 73.9
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 9.0e-35 152.5 196 45.9
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.4e-26 124.0 156 48.7
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 5.8e-26 123.2 74 78.4
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 6.9e-19 99.8 118 47.5
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 2.9e-17 94.4 67 62.7
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 5.1e-14 83.6 46 76.1
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 6.3e-12 76.6 306 23.5
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 1.8e-11 75.1 277 23.5
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 4.1e-11 73.9 57 66.7
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.5e-10 72.0 310 22.6
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 5.9e-10 70.1 279 22.9
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 7.7e-10 69.7 290 23.4
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 7.7e-10 69.7 282 22.0
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 1.0e-09 69.3 260 20.4
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.0e-09 69.3 280 22.9
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 1.0e-09 69.3 289 24.9
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.0e-09 69.3 270 23.0
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.3e-09 68.9 158 23.4
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.7e-09 68.6 285 23.5
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.2e-09 68.2 187 23.5
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 2.9e-09 67.8 289 24.2
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 2.9e-09 67.8 137 23.4
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 2.9e-09 67.8 163 23.9
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 5.0e-09 67.0 163 23.9
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 5.0e-09 67.0 267 22.5
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 6.5e-09 66.6 158 22.2
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 6.5e-09 66.6 158 22.2
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 8.5e-09 66.2 187 22.5
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 8.5e-09 66.2 262 22.1
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 3.2e-08 64.3 279 24.4
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 9.4e-08 62.8 133 24.8


User provided reference genes

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