Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 6.9e-54 213.8 112 100.0
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 1.1e-51 206.5 113 97.3
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 1.1e-51 206.5 113 97.3
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 1.1e-51 206.5 113 97.3
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 1.1e-51 206.5 113 97.3
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 3.4e-45 184.9 125 79.2
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 1.3e-44 183.0 121 81.8
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 1.7e-44 182.6 125 78.4
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 8.5e-44 180.3 125 77.6
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 8.5e-44 180.3 127 76.4
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 8.5e-44 180.3 118 81.4
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 5.9e-37 157.5 128 67.2
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 4.7e-34 147.9 121 67.8
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.4e-32 141.4 128 60.9
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 4.4e-32 141.4 128 60.9
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 4.4e-32 141.4 126 61.1
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 5.7e-32 141.0 128 60.2
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 1.3e-31 139.8 136 60.3
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 1.7e-31 139.4 130 57.7
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 6.3e-31 137.5 121 61.2
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.4e-30 136.3 129 57.4
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 2.4e-30 135.6 118 58.5
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 2.4e-30 135.6 117 63.2
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.1e-30 135.2 137 54.7
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 5.3e-30 134.4 137 54.0
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 5.3e-30 134.4 137 54.0
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 6.9e-30 134.0 121 57.0
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 1.2e-29 133.3 148 52.0
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.2e-29 133.3 140 52.9
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 2.0e-29 132.5 117 59.0
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 2.6e-29 132.1 136 56.6
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 3.4e-29 131.7 136 56.6
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.4e-29 131.7 133 53.4
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.4e-29 131.7 133 53.4
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 4.5e-29 131.3 140 52.1
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 5.9e-29 131.0 122 58.2
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 7.7e-29 130.6 128 53.1
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 1.7e-28 129.4 151 52.3
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 1.7e-28 129.4 138 55.1
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 2.2e-28 129.0 134 55.2
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 2.2e-28 129.0 134 55.2
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.2e-28 129.0 142 50.0
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 2.2e-28 129.0 142 50.0
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 3.8e-28 128.3 117 59.0
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 3.8e-28 128.3 119 56.3
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 3.8e-28 128.3 139 51.8
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 3.8e-28 128.3 130 54.6
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 5.0e-28 127.9 123 54.5
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 6.5e-28 127.5 139 51.1
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 6.5e-28 127.5 140 48.6
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 6.5e-28 127.5 146 49.3
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 6.5e-28 127.5 138 51.4
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 8.5e-28 127.1 132 53.0
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 8.5e-28 127.1 139 52.5
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 1.1e-27 126.7 117 57.3
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 1.1e-27 126.7 126 55.6
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.4e-27 126.3 133 51.1
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 1.4e-27 126.3 119 54.6
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 1.9e-27 125.9 126 57.1
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 1.9e-27 125.9 140 49.3
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 1.9e-27 125.9 140 53.6
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 1.9e-27 125.9 124 55.6
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 2.5e-27 125.6 136 51.5
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 2.5e-27 125.6 128 56.2
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 3.2e-27 125.2 131 56.5
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 3.2e-27 125.2 131 56.5
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 3.2e-27 125.2 135 52.6
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.2e-27 125.2 126 54.8
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 3.2e-27 125.2 138 54.3
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 5.5e-27 124.4 140 55.0
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 5.5e-27 124.4 138 49.3
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 7.2e-27 124.0 131 51.9
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 7.2e-27 124.0 126 54.0
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 7.2e-27 124.0 126 54.0
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 7.2e-27 124.0 126 54.0
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 7.2e-27 124.0 126 54.0
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 7.2e-27 124.0 129 55.8
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 7.2e-27 124.0 118 50.8
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 7.2e-27 124.0 130 53.8
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 9.4e-27 123.6 141 52.5
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 9.4e-27 123.6 139 49.6
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 9.4e-27 123.6 140 50.0
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 9.4e-27 123.6 128 53.9
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 9.4e-27 123.6 134 50.7
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 9.4e-27 123.6 130 50.0
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 1.2e-26 123.2 142 48.6
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.6e-26 122.9 132 53.0
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 1.6e-26 122.9 138 50.7
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 2.1e-26 122.5 149 48.3
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 2.7e-26 122.1 143 51.0
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 2.7e-26 122.1 128 51.6
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 3.6e-26 121.7 152 45.4
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 3.6e-26 121.7 148 45.3
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 3.6e-26 121.7 147 48.3
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 4.7e-26 121.3 117 54.7
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 1.0e-25 120.2 135 53.3
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 2.3e-25 119.0 142 47.2
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 3.0e-25 118.6 127 55.1
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 3.9e-25 118.2 142 48.6
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 3.9e-25 118.2 128 53.1
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 5.2e-25 117.9 112 58.0
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 6.7e-25 117.5 125 48.8
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.5e-24 116.3 111 55.0
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 2.6e-24 115.5 143 49.0
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 4.4e-24 114.8 144 47.9
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 7.4e-24 114.0 111 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 1.3e-23 113.2 127 50.4
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 1.7e-23 112.8 142 45.8
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 4.8e-23 111.3 109 62.4
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 6.3e-23 110.9 129 48.8
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 1.4e-22 109.8 135 51.1
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.0e-20 103.6 143 44.8
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 6.5e-20 100.9 130 46.9
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.9e-19 99.4 139 43.2
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 9.4e-19 97.1 143 41.3
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.7e-18 95.5 123 46.3
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 6.1e-18 94.4 146 40.4
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 2.6e-16 89.0 106 47.2
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 4.4e-16 88.2 108 44.4
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 2.2e-15 85.9 106 51.9
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 2.2e-15 85.9 107 45.8
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 2.2e-15 85.9 109 46.8
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 6.3e-15 84.3 125 46.4
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 6.5e-12 74.3 62 58.1
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 1.2e-10 70.1 104 41.3
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 1.6e-10 69.7 74 44.6
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 6.1e-10 67.8 69 47.8
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 6.1e-10 67.8 53 60.4
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 3.7e-07 58.5 46 54.3
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.1e-06 55.5 106 38.7
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.1e-06 55.5 106 38.7
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.1e-06 55.5 106 38.7
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 5.4e-06 54.7 102 38.2
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 9.1e-06 53.9 106 38.7
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 9.1e-06 53.9 106 38.7


User provided reference genes

Program Settings