Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 1.2e-192 676.4 346 100.0
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 6.7e-148 527.7 365 77.5
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 1.3e-146 523.5 365 77.0
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 3.7e-146 521.9 365 76.4
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 3.2e-142 508.8 358 76.5
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 4.2e-134 481.9 329 78.4
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 6.1e-101 371.7 409 55.0
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 6.1e-101 371.7 409 55.0
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 8.0e-101 371.3 374 59.6
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 1.0e-100 370.9 413 54.7
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 2.2e-98 363.2 411 54.5
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 8.3e-98 361.3 406 54.2
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 1.8e-97 360.1 411 54.3
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 3.3e-94 349.4 446 50.7
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 2.3e-92 343.2 427 51.3
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.7e-90 337.0 404 51.0
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.8e-90 336.3 399 51.9
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.6e-88 330.5 398 51.5
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 7.8e-88 328.2 376 51.6
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 5.0e-87 325.5 438 47.7
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.2e-85 320.9 362 53.0
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 2.1e-85 320.1 439 47.4
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 6.4e-82 308.5 303 60.7
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 6.6e-79 298.5 282 60.3
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.8e-77 293.1 256 63.7
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 8.3e-74 281.6 464 41.8
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 2.8e-69 266.5 265 56.6
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 4.1e-65 252.7 311 49.8
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 5.8e-59 232.3 297 51.2
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.7e-50 204.1 394 38.3
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 6.4e-50 202.2 390 38.2
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.9e-49 200.7 394 38.1
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 2.4e-49 200.3 363 40.2
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 3.9e-47 193.0 409 36.7
BcaC02g08834 Brassica carinata HOM05D003497 ORTHO05D003964 5.1e-47 192.6 162 65.4
BcaC02g08838 Brassica carinata HOM05D003497 ORTHO05D003964 5.1e-47 192.6 162 65.4
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 8.1e-45 185.3 416 36.3
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 4.0e-44 183.0 293 39.6
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 4.0e-44 183.0 263 43.0
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 2.6e-43 180.3 421 34.4
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 3.4e-43 179.9 424 34.9
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 3.4e-43 179.9 263 43.3
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 5.8e-43 179.1 400 35.2
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 7.6e-43 178.7 398 35.9
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 1.3e-42 177.9 415 35.4
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.7e-42 177.6 394 35.0
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 3.8e-42 176.4 394 34.5
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 6.4e-42 175.6 402 34.3
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 6.4e-42 175.6 410 35.4
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 1.9e-41 174.1 434 32.5
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 2.4e-41 173.7 392 35.5
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.2e-41 173.3 388 35.6
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 4.2e-41 172.9 451 33.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.2e-40 171.4 388 35.3
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 1.6e-40 171.0 320 40.9
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.6e-40 171.0 388 35.6
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 3.5e-40 169.9 412 34.0
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 4.6e-40 169.5 426 32.2
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 4.6e-40 169.5 253 43.5
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 1.3e-39 167.9 435 31.5
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.3e-39 167.2 284 41.5
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 6.7e-39 165.6 270 38.9
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 8.7e-39 165.2 266 38.7
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 8.7e-39 165.2 430 32.6
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.9e-38 164.1 417 31.4
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 4.3e-38 162.9 403 33.5
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 5.6e-38 162.5 268 37.7
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 9.6e-38 161.8 410 32.4
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 1.3e-37 161.4 390 33.8
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 2.1e-37 160.6 319 37.6
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 4.8e-37 159.5 265 38.1
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 4.8e-37 159.5 447 30.4
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 4.8e-37 159.5 448 32.1
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 6.2e-37 159.1 265 39.6
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 8.1e-37 158.7 454 30.6
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.1e-36 158.3 418 30.6
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 1.4e-36 157.9 264 39.8
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.4e-36 157.9 442 29.6
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 3.1e-36 156.8 261 39.5
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 5.3e-36 156.0 286 38.1
C03p57300 Brassica napus HOM05D003497 ORTHO05D003964 6.9e-36 155.6 192 55.7
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 6.9e-36 155.6 456 30.7
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 6.9e-36 155.6 409 32.5
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 9.0e-36 155.2 406 32.5
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.2e-35 154.8 195 46.7
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 2.0e-35 154.1 427 30.4
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.6e-35 153.7 254 38.6
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 2.6e-35 153.7 435 30.1
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 4.5e-35 152.9 363 33.6
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 4.5e-35 152.9 289 34.9
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 4.5e-35 152.9 431 29.7
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 5.8e-35 152.5 380 33.4
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 5.8e-35 152.5 261 36.8
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 7.6e-35 152.1 278 36.7
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.3e-34 151.4 429 30.1
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.2e-34 150.6 282 35.8
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 2.9e-34 150.2 229 41.0
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 2.9e-34 150.2 275 36.4
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.8e-34 149.8 366 33.6
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 8.4e-34 148.7 293 35.2
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 1.1e-33 148.3 358 36.0
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.1e-33 148.3 442 30.3
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 1.4e-33 147.9 434 30.6
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 1.4e-33 147.9 314 34.1
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 1.4e-33 147.9 274 35.0
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 1.9e-33 147.5 271 37.6
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.9e-33 147.5 397 31.7
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 4.2e-33 146.4 231 41.6
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 4.2e-33 146.4 441 31.3
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 4.2e-33 146.4 265 35.5
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 5.5e-33 146.0 278 36.3
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 9.3e-33 145.2 268 37.3
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 9.3e-33 145.2 373 33.5
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 1.2e-32 144.8 459 29.0
C08p22090 Brassica napus HOM05D003497 ORTHO05D024176 2.1e-32 144.1 319 36.7
BolC8t49854H Brassica oleracea HOM05D003497 ORTHO05D024176 2.1e-32 144.1 319 36.7
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 2.7e-32 143.7 273 38.5
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 3.5e-32 143.3 266 36.8
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 4.6e-32 142.9 275 36.0
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 1.0e-31 141.7 387 29.7
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 2.3e-31 140.6 256 36.3
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 3.0e-31 140.2 271 39.5
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 3.9e-31 139.8 218 42.7
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 8.7e-31 138.7 272 37.9
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.1e-30 138.3 255 36.5
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.1e-30 138.3 255 36.5
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 1.5e-30 137.9 449 28.1
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 1.9e-30 137.5 323 31.3
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 2.1e-29 134.0 413 31.0
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 3.7e-29 133.3 369 33.1
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 6.2e-29 132.5 275 36.4
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 4.0e-28 129.8 231 33.3
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 9.0e-28 128.6 304 32.9
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.5e-27 127.9 191 41.9
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 3.4e-27 126.7 277 35.7
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 5.8e-27 125.9 248 35.1
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.0e-26 125.2 240 37.5
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 2.2e-26 124.0 247 34.4
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.9e-26 123.6 133 51.9
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.9e-26 123.6 364 31.3
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 4.9e-26 122.9 199 38.2
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 8.4e-26 122.1 238 36.6
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 1.9e-25 120.9 253 36.4
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 5.5e-25 119.4 295 33.6
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 2.7e-24 117.1 234 35.0
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 4.6e-24 116.3 291 33.7
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 8.7e-23 112.1 267 32.2
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.1e-22 111.7 250 36.4
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 1.6e-21 107.8 225 34.7
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 2.8e-21 107.1 242 34.7
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 3.7e-21 106.7 266 32.0
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 4.8e-21 106.3 242 34.3
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 1.1e-20 105.1 179 41.9
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 1.8e-20 104.4 225 34.2
BcaC01g03001 Brassica carinata HOM05D003497 ORTHO05D003964 3.1e-20 103.6 191 42.9
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 3.1e-20 103.6 235 31.5
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 2.0e-19 100.9 291 30.6
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 4.5e-19 99.8 322 31.1
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 5.9e-19 99.4 222 34.7
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 7.7e-19 99.0 245 34.3
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 3.8e-18 96.7 260 28.1
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 5.0e-18 96.3 290 29.3
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 8.5e-18 95.5 347 28.5
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 2.5e-17 94.0 172 34.3
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.2e-17 93.2 255 27.5
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.6e-16 91.3 78 57.7
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.7e-16 90.5 261 27.6
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 6.1e-16 89.4 262 26.3
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 1.4e-15 88.2 370 25.1
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 1.8e-15 87.8 111 40.5
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 1.7e-13 81.3 86 50.0
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 1.1e-12 78.6 155 36.1
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.4e-12 77.4 105 40.0
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 4.1e-12 76.6 231 29.0
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 4.5e-11 73.2 80 43.8
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 1.0e-10 72.0 186 31.2
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 2.2e-10 70.9 85 45.9
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 3.8e-10 70.1 245 26.1
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 1.4e-09 68.2 88 43.2
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 1.9e-09 67.8 191 30.4
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 3.2e-09 67.0 81 44.4
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 4.2e-09 66.6 109 34.9
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 1.2e-08 65.1 112 35.7
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 2.1e-08 64.3 104 38.5
SEGI_41103 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 2.1e-08 64.3 192 33.3
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 4.7e-08 63.2 100 41.0
Actinidia02442 Actinidia chinensis HOM05D003497 ORTHO05D003964 6.1e-08 62.8 77 46.8


User provided reference genes

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