Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27734 Brassica carinata HOM05D011849 ORTHO05D001736 2.7e-106 388.7 195 100.0
BraA04t17188Z Brassica rapa HOM05D011849 ORTHO05D001736 3.7e-103 378.3 195 96.4
A04p15520 Brassica napus HOM05D011849 ORTHO05D001736 1.5e-101 372.9 195 95.4
BcaC02g08858 Brassica carinata HOM05D011849 ORTHO05D001736 5.0e-100 367.9 195 94.4
C04p49780 Brassica napus HOM05D011849 ORTHO05D001736 5.0e-100 367.9 195 94.4
BolC4t26569H Brassica oleracea HOM05D011849 ORTHO05D001736 5.0e-100 367.9 195 94.4
Thhalv10028226m.g Eutrema salsugineum HOM05D011849 ORTHO05D001736 1.4e-73 280.0 197 76.1
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 1.5e-72 276.6 196 75.5
AL7G51260 Arabidopsis lyrata HOM05D011849 ORTHO05D001736 1.5e-64 250.0 198 68.2
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 2.7e-61 239.2 202 66.8
CARHR263210 Cardamine hirsuta HOM05D011849 ORTHO05D001736 8.9e-57 224.2 201 63.7
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 6.8e-41 171.4 196 53.6
AT5G39140 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 1.9e-38 163.3 153 62.7
AT5G39170 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 1.6e-37 160.2 155 61.3
Aa31LG9G16720 Aethionema arabicum HOM05D011849 ORTHO05D001736 5.8e-24 115.2 199 42.7
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.1e-13 80.1 213 33.8
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 1.6e-10 70.5 215 33.5
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 1.8e-09 67.0 231 31.2
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 2.4e-09 66.6 202 33.2
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 3.1e-09 66.2 148 35.1
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 4.0e-09 65.9 206 34.5
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 9.0e-09 64.7 205 29.3
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 1.2e-08 64.3 203 32.0
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.5e-08 63.9 59 55.9
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.0e-08 63.5 202 30.7
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 2.6e-08 63.2 222 32.4
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 2.6e-08 63.2 210 30.5
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 3.4e-08 62.8 227 31.7
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 3.4e-08 62.8 147 35.4
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 3.4e-08 62.8 238 30.7
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 4.5e-08 62.4 231 32.0
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 5.8e-08 62.0 59 54.2
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 1.0e-07 61.2 166 33.7
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.3e-07 60.8 215 27.4
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 1.3e-07 60.8 175 33.7
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 1.7e-07 60.5 208 28.8
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.2e-07 60.1 176 33.5
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.2e-07 60.1 176 33.5
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 2.2e-07 60.1 234 29.1
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 2.2e-07 60.1 217 29.5
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 2.9e-07 59.7 164 34.1
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 3.8e-07 59.3 245 29.0
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 3.8e-07 59.3 218 33.0
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 4.9e-07 58.9 194 30.4
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 4.9e-07 58.9 223 33.6
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 4.9e-07 58.9 164 34.1
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 4.9e-07 58.9 81 44.4
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 6.5e-07 58.5 170 34.1
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 6.5e-07 58.5 213 30.5
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 6.5e-07 58.5 214 29.0
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 6.5e-07 58.5 255 26.7
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 6.5e-07 58.5 50 66.0
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 8.4e-07 58.2 175 33.1
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 8.4e-07 58.2 204 26.5
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 1.1e-06 57.8 152 33.6
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 1.1e-06 57.8 191 32.5
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 1.1e-06 57.8 179 31.8
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 1.9e-06 57.0 226 29.6
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 1.9e-06 57.0 58 48.3
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 3.2e-06 56.2 201 29.4
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 3.2e-06 56.2 209 28.7
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 3.2e-06 56.2 191 31.9
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 5.5e-06 55.5 60 53.3
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 5.5e-06 55.5 223 29.1
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 9.3e-06 54.7 197 31.5


User provided reference genes

Program Settings