Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.1e-258 896.3 534 100.0
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.1e-229 800.0 558 89.4
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.1e-229 800.0 558 89.4
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.0e-227 793.5 551 90.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.3e-227 793.1 553 89.3
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.7e-220 768.8 544 89.0
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.0e-216 756.9 559 83.9
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 5.9e-212 741.1 567 82.5
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 1.3e-206 723.4 564 82.6
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.1e-205 720.3 551 84.0
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.6e-204 716.5 548 83.6
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 2.0e-204 716.1 543 84.3
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 1.8e-197 693.0 565 76.3
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.4e-181 640.2 541 76.0
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 2.4e-152 543.1 466 73.8
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 7.6e-151 538.1 538 63.9
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.3e-150 537.3 539 68.5
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 7.1e-149 531.6 448 74.8
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.6e-148 530.4 465 68.4
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 2.7e-148 529.6 431 75.9
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.7e-148 529.6 461 68.8
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 4.6e-148 528.9 463 71.7
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 6.0e-148 528.5 455 68.4
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.3e-147 527.3 503 63.8
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.8e-147 526.9 439 70.8
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.8e-147 526.9 439 74.9
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 3.0e-147 526.2 541 66.5
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 6.7e-147 525.0 456 68.6
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 6.7e-147 525.0 549 59.7
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 6.7e-147 525.0 451 74.5
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 8.7e-147 524.6 456 68.2
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 1.9e-146 523.5 459 69.1
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 5.6e-146 521.9 531 64.0
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.4e-146 521.5 435 75.9
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 9.6e-146 521.2 443 69.5
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-145 520.8 466 71.9
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 3.7e-145 519.2 455 71.6
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.8e-144 516.9 457 68.7
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.1e-144 516.2 441 73.9
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 6.9e-144 515.0 548 59.5
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 9.0e-144 514.6 536 63.4
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.2e-143 514.2 465 61.1
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.5e-143 513.8 451 72.3
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 2.0e-143 513.5 498 63.1
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.6e-143 513.1 467 66.6
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 3.4e-143 512.7 517 65.6
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 5.8e-143 511.9 450 67.8
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.0e-142 511.1 464 71.3
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.0e-142 511.1 459 71.0
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.7e-142 510.4 459 71.2
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.7e-142 510.4 459 70.8
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 2.2e-142 510.0 552 59.8
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 2.9e-142 509.6 455 67.7
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 3.8e-142 509.2 425 69.6
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 6.5e-142 508.4 446 68.2
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 8.4e-142 508.1 506 65.8
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-141 507.3 430 75.3
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 4.2e-141 505.8 454 71.1
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 7.1e-141 505.0 548 59.3
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.2e-140 504.2 542 62.9
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-140 504.2 437 74.4
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 1.6e-140 503.8 498 62.4
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 7.9e-140 501.5 554 63.7
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.3e-139 500.7 439 72.7
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 5.1e-139 498.8 462 66.0
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 8.7e-139 498.0 401 73.1
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 1.5e-138 497.3 460 68.9
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.9e-138 496.9 534 64.4
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 4.3e-138 495.7 433 72.3
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 5.7e-138 495.4 511 64.2
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 5.7e-138 495.4 434 72.1
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 7.4e-138 495.0 579 55.6
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.3e-137 494.2 462 66.0
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.4e-136 490.0 529 63.3
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 3.1e-136 489.6 511 63.8
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.9e-136 488.4 428 73.4
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.2e-135 487.6 529 63.5
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.2e-135 487.6 471 67.3
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 2.0e-135 486.9 575 59.5
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 2.2e-134 483.4 395 77.7
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 3.8e-134 482.6 471 62.8
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 5.0e-134 482.3 610 50.7
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 6.5e-134 481.9 545 61.5
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 8.5e-134 481.5 428 68.0
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 4.2e-133 479.2 468 67.7
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.2e-132 477.6 461 62.5
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-132 476.9 540 61.1
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-131 474.2 538 61.0
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.4e-131 474.2 544 61.4
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.3e-131 473.4 543 59.1
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 3.3e-130 469.5 441 66.0
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 4.8e-129 465.7 457 63.7
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.3e-129 465.3 555 59.1
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.4e-128 463.4 382 69.9
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 4.1e-128 462.6 476 66.6
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.5e-127 460.7 539 52.9
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.1e-125 454.5 403 66.5
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 5.5e-125 452.2 443 62.8
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.2e-124 451.1 472 64.8
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 2.1e-124 450.3 357 69.2
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 4.7e-124 449.1 523 61.6
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 6.1e-124 448.7 467 66.6
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 7.9e-124 448.4 433 63.0
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 8.8e-123 444.9 453 61.4
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 7.4e-122 441.8 492 61.8
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.4e-120 437.6 423 69.0
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 3.1e-120 436.4 533 59.8
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 5.5e-117 425.6 467 62.3
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 7.4e-114 415.2 522 53.6
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 5.9e-111 405.6 419 66.1
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 4.2e-109 399.4 470 56.0
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 4.7e-108 396.0 466 59.9
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 3.0e-107 393.3 534 55.6
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 2.0e-106 390.6 389 64.5
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 9.7e-106 388.3 594 46.1
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 2.0e-103 380.6 419 59.7
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 5.9e-103 379.0 436 63.8
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 7.2e-101 372.1 407 63.4
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 6.8e-99 365.5 242 81.4
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 6.3e-97 359.0 420 60.0
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 4.5e-95 352.8 330 64.5
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.5e-93 347.1 343 64.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.2e-91 339.3 332 59.9
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.5e-85 320.5 365 64.7
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.0e-83 315.1 345 65.8
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.3e-81 308.1 401 54.6
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.5e-77 294.7 280 56.1
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 2.1e-76 290.8 600 41.5
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 3.0e-70 270.4 280 72.1
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 5.1e-62 243.0 182 74.7
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.1e-60 237.7 380 38.9
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.3e-54 218.4 322 55.3
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.6e-53 212.2 153 68.6
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.2e-48 197.2 142 68.3
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.4e-48 196.4 142 68.3
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-47 194.9 142 67.6
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 1.7e-46 191.4 135 72.6
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-43 181.8 169 57.4
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.2e-41 174.5 135 64.4
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.4e-41 172.9 135 63.0
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 3.7e-36 157.1 93 87.1
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-35 154.5 172 51.7
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.6e-34 149.4 129 60.5
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.2e-31 142.1 95 75.8
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.2e-28 129.8 114 58.8
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.4e-25 119.4 73 75.3
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 6.1e-23 113.2 460 25.4
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.2e-15 89.0 214 31.3
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 1.6e-15 88.6 53 77.4
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 1.8e-14 85.1 55 70.9
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 6.3e-12 76.6 71 62.0
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.1e-11 74.3 52 75.0
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 3.4e-10 70.9 82 51.2
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 2.9e-09 67.8 107 41.1
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 6.5e-09 66.6 123 38.2


User provided reference genes

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