Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 6.5e-279 963.4 470 100.0
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 9.7e-243 843.2 469 88.5
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 9.7e-243 843.2 469 88.5
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 2.8e-242 841.6 469 88.5
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-241 839.7 469 88.3
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.2e-239 832.0 469 87.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-235 819.3 470 86.0
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 2.3e-228 795.4 471 84.7
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 6.3e-226 787.3 472 82.2
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 9.5e-222 773.5 469 81.9
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 4.1e-217 758.1 470 80.4
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.0e-217 757.3 470 80.2
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.2e-216 756.5 470 80.0
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 2.0e-216 755.7 470 80.0
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.1e-212 741.9 502 77.1
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 3.0e-207 725.3 384 91.9
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.7e-199 699.5 444 77.0
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 7.3e-198 694.1 484 71.1
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-188 663.3 459 75.8
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.1e-177 627.1 455 65.5
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.4e-177 624.8 472 64.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 9.3e-177 624.0 480 62.7
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 9.3e-177 624.0 469 63.5
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 3.5e-176 622.1 468 63.9
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 4.6e-176 621.7 469 63.5
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.1e-174 617.1 469 63.5
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.1e-174 617.1 469 62.3
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.5e-174 616.7 469 64.4
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.5e-174 615.9 467 62.7
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 3.3e-174 615.5 473 62.6
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 5.6e-174 614.8 476 62.6
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.3e-173 613.6 469 61.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.6e-173 613.2 473 63.0
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 6.2e-173 611.3 464 63.1
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 6.2e-173 611.3 482 62.2
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 6.2e-173 611.3 469 63.1
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 6.2e-173 611.3 470 61.9
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.4e-172 610.1 460 63.0
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 3.1e-172 609.0 469 62.5
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 9.0e-172 607.4 456 62.5
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.0e-171 606.3 469 63.3
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.9e-171 604.0 469 60.6
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.9e-171 604.0 469 60.6
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 6.4e-170 601.3 474 60.1
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.4e-169 600.1 469 61.4
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-168 597.0 457 62.4
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 2.1e-168 596.3 443 63.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.1e-168 596.3 442 63.6
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.5e-168 595.5 470 60.4
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.5e-168 595.5 469 60.3
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 6.0e-168 594.7 442 63.1
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 6.0e-168 594.7 442 63.6
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.0e-167 594.0 468 61.1
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.8e-167 593.2 471 61.6
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.8e-167 593.2 398 68.8
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.8e-167 593.2 470 60.0
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 3.9e-167 592.0 469 59.9
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.9e-167 592.0 442 63.8
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.1e-166 590.5 399 68.7
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.5e-166 590.1 443 62.8
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.5e-166 589.3 469 60.8
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.3e-166 589.0 470 60.4
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 3.3e-166 589.0 386 71.2
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 9.6e-166 587.4 450 62.4
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.1e-165 586.3 475 59.6
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.8e-165 585.1 496 59.3
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 2.4e-164 582.8 456 61.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 9.0e-164 580.9 454 61.7
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.5e-163 580.1 472 59.5
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.3e-162 577.0 471 59.0
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.3e-162 577.0 470 60.0
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.3e-162 577.0 472 60.6
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 4.9e-162 575.1 412 66.0
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 8.4e-162 574.3 438 63.7
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.4e-161 573.5 468 59.4
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 4.2e-161 572.0 463 59.8
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 4.2e-161 572.0 456 59.6
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 9.3e-161 570.9 474 58.6
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-160 570.5 474 58.9
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.7e-160 569.3 475 58.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 3.5e-160 568.9 438 61.0
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 3.5e-160 568.9 474 58.6
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.0e-159 565.8 458 60.5
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.0e-159 565.8 476 58.8
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.9e-159 565.5 474 59.3
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.7e-159 564.7 459 60.8
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.7e-159 564.3 412 64.1
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 3.3e-158 562.4 405 65.2
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.3e-158 562.0 471 59.2
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 2.2e-157 559.7 445 61.8
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.2e-157 559.7 405 64.9
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.4e-156 557.0 423 62.2
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 3.4e-155 552.4 489 56.2
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.1e-153 547.4 389 65.8
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 2.2e-149 533.1 474 55.9
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 8.2e-149 531.2 403 61.3
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 6.9e-148 528.1 492 54.7
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 7.7e-147 524.6 384 63.0
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.9e-146 522.7 494 54.7
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 3.8e-146 522.3 481 55.7
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.1e-145 520.8 470 56.8
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.4e-145 520.4 406 62.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 3.2e-145 519.2 474 56.8
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 5.5e-145 518.5 399 62.2
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 9.4e-145 517.7 472 54.2
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.0e-143 514.2 397 61.0
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.8e-143 513.5 424 59.0
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.4e-140 503.8 400 60.5
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 9.1e-140 501.1 363 66.9
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 5.9e-139 498.4 438 53.0
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.9e-137 493.4 399 55.4
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 2.7e-136 489.6 400 56.0
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.5e-134 483.8 457 51.9
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 6.1e-128 461.8 550 47.1
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.6e-126 456.4 370 60.8
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.1e-124 451.1 485 49.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.8e-117 426.4 384 55.5
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.0e-116 421.8 347 58.2
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.0e-115 420.2 347 58.2
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.8e-111 407.1 442 48.9
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.9e-107 392.1 273 67.8
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 8.0e-104 381.7 497 43.7
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.0e-103 379.4 442 48.6
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 2.6e-102 376.7 273 64.5
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.9e-100 370.5 369 47.4
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.7e-93 346.3 395 48.6
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.3e-90 337.0 291 56.7
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 4.7e-88 329.3 373 48.5
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.8e-87 327.4 393 45.5
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.1e-82 309.3 360 42.5
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 3.3e-73 280.0 227 57.7
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 9.0e-71 271.9 281 49.8
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 4.6e-67 259.6 203 62.6
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-63 248.4 256 58.6
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-63 248.4 256 59.0
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.2e-61 240.7 178 63.5
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.1e-51 207.6 256 52.7
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 9.6e-49 198.7 214 46.3
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.6e-48 198.0 118 72.9
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 6.9e-47 192.6 181 54.7
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.6e-43 181.4 198 51.0
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 5.5e-36 156.4 157 51.0
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.2e-32 144.4 234 38.0
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 8.2e-32 142.5 86 82.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 2.0e-30 137.9 107 58.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 4.5e-30 136.7 99 62.6
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 7.2e-28 129.4 92 67.4
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-25 122.1 229 34.9
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.1e-19 101.3 60 75.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 4.0e-18 97.1 124 41.9
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 2.6e-17 94.4 73 57.5
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 4.5e-14 83.6 70 52.9
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.7e-08 65.1 79 46.8
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.1e-07 62.4 42 61.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.8e-07 61.6 33 75.8


User provided reference genes

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