Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.7e-135 486.1 264 100.0
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.2e-112 410.2 268 80.6
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.2e-112 410.2 268 80.6
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 5.9e-112 407.9 268 80.6
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.1e-107 393.7 229 86.9
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 4.4e-107 391.7 229 87.3
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.1e-97 359.0 264 73.5
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.1e-97 359.0 264 73.5
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 2.0e-80 303.1 267 64.8
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 5.9e-80 301.6 267 66.3
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.4e-76 290.4 230 70.9
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 7.0e-73 278.1 270 61.5
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.0e-72 276.6 268 60.8
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.6e-69 266.9 267 59.6
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.4e-65 253.8 229 64.6
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.9e-62 243.4 281 54.4
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 8.9e-52 208.0 238 50.8
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 4.7e-45 185.7 229 47.2
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.8e-44 183.7 229 46.7
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.0e-44 182.6 229 46.3
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 7.8e-40 168.3 242 43.8
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 5.6e-38 162.2 225 45.8
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 2.8e-37 159.8 224 42.9
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 3.6e-37 159.5 218 46.8
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 3.6e-37 159.5 219 47.9
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.2e-35 154.5 228 44.7
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 2.0e-35 153.7 222 46.4
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 3.4e-35 152.9 143 55.9
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 7.6e-35 151.8 213 45.5
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.9e-33 147.1 140 58.6
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 5.4e-33 145.6 248 41.9
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 7.1e-33 145.2 155 49.0
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.3e-33 144.8 164 47.6
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 1.2e-32 144.4 132 55.3
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.1e-32 143.7 228 44.7
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.7e-32 143.3 244 41.0
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.7e-32 143.3 243 40.7
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 2.7e-32 143.3 140 56.4
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.5e-32 142.9 138 55.1
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.9e-32 141.7 242 38.8
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 7.9e-32 141.7 219 42.9
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 7.9e-32 141.7 215 42.8
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.0e-31 141.4 206 43.7
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.7e-31 140.6 221 43.4
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.3e-31 140.2 222 44.6
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 3.0e-31 139.8 132 55.3
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.0e-31 139.8 132 55.3
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.0e-31 139.8 155 53.5
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.9e-31 139.4 139 51.8
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 3.9e-31 139.4 148 48.6
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 5.1e-31 139.0 221 42.5
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.6e-31 138.7 168 47.0
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.7e-31 138.3 251 38.6
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 8.7e-31 138.3 137 50.4
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-30 137.9 139 51.8
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.5e-30 137.5 144 49.3
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.9e-30 137.1 213 44.6
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.9e-30 137.1 141 51.8
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.9e-30 137.1 148 48.0
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 2.5e-30 136.7 135 55.6
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.5e-30 136.7 218 43.6
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.5e-30 136.7 223 40.8
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 3.3e-30 136.3 224 42.9
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.3e-30 136.3 148 47.3
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 3.3e-30 136.3 211 41.2
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 4.3e-30 136.0 216 41.2
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 7.4e-30 135.2 124 57.3
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 9.6e-30 134.8 148 48.0
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-29 134.4 227 42.3
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.3e-29 134.4 148 48.0
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.6e-29 134.0 138 57.2
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 2.1e-29 133.7 221 41.2
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 2.1e-29 133.7 242 36.4
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 2.1e-29 133.7 149 49.7
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.1e-29 133.7 207 40.6
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.8e-29 133.3 130 53.1
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 3.6e-29 132.9 148 48.0
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 3.6e-29 132.9 142 47.9
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 4.8e-29 132.5 139 52.5
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 4.8e-29 132.5 207 45.4
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 6.2e-29 132.1 170 44.7
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.1e-29 131.7 156 48.1
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 8.1e-29 131.7 131 53.4
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.1e-28 131.3 139 48.9
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.1e-28 131.3 138 52.2
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.1e-28 131.3 148 47.3
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.4e-28 131.0 251 38.6
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.8e-28 130.6 250 36.8
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 2.4e-28 130.2 226 39.4
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 3.1e-28 129.8 140 52.9
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 3.1e-28 129.8 212 41.5
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 3.1e-28 129.8 150 46.7
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 4.0e-28 129.4 116 56.9
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 4.0e-28 129.4 222 42.8
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 5.3e-28 129.0 139 49.6
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 9.0e-28 128.3 209 42.6
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.2e-27 127.9 146 49.3
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.2e-27 127.9 182 43.4
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.0e-27 127.1 141 49.6
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.0e-27 127.1 129 50.4
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 2.6e-27 126.7 198 40.9
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 3.4e-27 126.3 139 48.9
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 9.9e-27 124.8 140 50.7
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.7e-26 124.0 180 45.6
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.7e-26 124.0 161 44.7
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 2.9e-26 123.2 216 40.3
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.9e-26 123.2 214 41.6
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 2.9e-26 123.2 146 49.3
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 3.8e-26 122.9 213 39.4
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 4.9e-26 122.5 226 35.4
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 6.4e-26 122.1 218 39.4
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.1e-25 121.3 205 40.5
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.1e-25 121.3 236 36.9
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.4e-25 120.9 180 44.4
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 1.4e-25 120.9 235 35.7
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.9e-25 120.6 129 45.7
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 2.4e-25 120.2 242 36.8
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 3.2e-25 119.8 199 41.7
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 3.2e-25 119.8 128 48.4
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.2e-24 117.9 201 36.3
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.6e-24 117.5 139 44.6
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.0e-24 115.5 239 35.6
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 7.9e-24 115.2 132 44.7
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.3e-23 114.4 164 38.4
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 2.3e-23 113.6 115 48.7
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 6.7e-23 112.1 120 49.2
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 8.7e-23 111.7 129 45.7
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 9.6e-22 108.2 129 45.0
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-21 107.8 254 33.1
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.3e-21 107.8 198 37.9
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 2.8e-21 106.7 144 43.8
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.8e-21 106.7 144 43.8
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 3.7e-21 106.3 140 45.7
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 8.1e-21 105.1 216 37.5
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 6.9e-20 102.1 128 43.0
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.2e-19 101.3 245 35.1
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 3.4e-19 99.8 220 35.9
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.5e-19 99.4 127 45.7
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.1e-17 94.7 134 41.0
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-17 94.0 92 48.9
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 4.2e-17 92.8 105 48.6
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 1.2e-16 91.3 113 42.5
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.3e-15 87.8 165 40.6
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.3e-15 87.8 199 32.7
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 5.1e-15 85.9 86 55.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 4.8e-13 79.3 87 49.4
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.4e-12 77.8 83 55.4
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 3.1e-12 76.6 156 37.8
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.6e-11 73.6 119 39.5
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.4e-11 73.2 212 32.5
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 5.0e-10 69.3 83 42.2
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.9e-09 67.4 121 38.0
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 7.9e-08 62.0 105 42.9
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.0e-07 60.1 104 35.6
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.5e-06 57.8 71 40.8
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 9.7e-06 55.1 104 37.5


User provided reference genes

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