Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 5.5e-78 294.3 152 100.0
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 1.9e-70 269.2 152 92.1
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 3.5e-69 265.0 152 90.8
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 3.5e-69 265.0 152 90.8
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 6.0e-69 264.2 152 90.8
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 2.5e-67 258.8 153 88.2
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 3.2e-62 241.9 152 80.9
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 6.1e-53 211.1 164 68.9
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 1.5e-51 206.5 163 65.0
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.0e-51 206.1 127 79.5
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 1.4e-49 199.9 163 65.0
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 2.0e-48 196.1 164 65.9
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.7e-37 159.1 157 54.8
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.4e-36 156.8 163 53.4
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 7.5e-35 151.0 157 51.0
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 9.7e-35 150.6 154 52.6
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 8.2e-34 147.5 161 52.8
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 1.1e-33 147.1 152 52.6
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 7.0e-33 144.4 153 49.7
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 1.0e-31 140.6 153 48.4
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 5.0e-31 138.3 158 48.1
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 8.5e-31 137.5 132 50.8
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 8.5e-31 137.5 148 51.4
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 7.2e-30 134.4 148 49.3
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 9.1e-25 117.5 125 48.0
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 2.0e-24 116.3 126 48.4
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 3.5e-24 115.5 153 42.5
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 1.3e-23 113.6 128 46.9
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 2.9e-23 112.5 141 48.2
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 8.5e-23 110.9 137 43.8
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 1.9e-22 109.8 130 44.6
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 1.9e-22 109.8 133 48.1
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 3.2e-22 109.0 125 45.6
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 5.5e-22 108.2 128 43.8
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 5.5e-22 108.2 123 46.3
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 1.6e-21 106.7 132 45.5
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.1e-21 106.3 136 43.4
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.8e-21 105.9 145 42.1
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 2.8e-21 105.9 136 43.4
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 3.6e-21 105.5 122 46.7
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 4.7e-21 105.1 126 44.4
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 8.0e-21 104.4 126 44.4
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 8.0e-21 104.4 125 44.8
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 1.8e-20 103.2 145 37.9
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 2.3e-20 102.8 150 39.3
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 5.2e-20 101.7 103 49.5
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 5.2e-20 101.7 140 40.0
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 5.2e-20 101.7 124 39.5
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 6.8e-20 101.3 120 41.7
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 8.8e-20 100.9 131 40.5
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 1.2e-19 100.5 123 43.1
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 1.5e-19 100.1 123 42.3
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.0e-19 99.8 132 46.2
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 3.4e-19 99.0 141 38.3
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 4.4e-19 98.6 156 37.8
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 4.4e-19 98.6 150 36.0
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 9.8e-19 97.4 151 39.1
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.3e-18 97.1 125 44.0
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 1.7e-18 96.7 125 44.0
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 2.2e-18 96.3 148 41.9
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.2e-18 96.3 133 45.9
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 2.8e-18 95.9 128 39.1
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 2.8e-18 95.9 133 38.3
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 2.8e-18 95.9 124 37.9
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 2.8e-18 95.9 125 41.6
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 2.8e-18 95.9 127 40.2
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 4.9e-18 95.1 125 39.2
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 6.3e-18 94.7 148 38.5
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 8.3e-18 94.4 124 37.9
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 8.3e-18 94.4 138 42.8
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.4e-17 93.6 123 42.3
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.1e-17 92.4 132 44.7
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 4.1e-17 92.0 118 43.2
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 5.4e-17 91.7 137 44.5
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 5.4e-17 91.7 134 41.0
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 7.0e-17 91.3 149 35.6
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 1.6e-16 90.1 150 40.0
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 1.6e-16 90.1 127 37.0
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 1.6e-16 90.1 127 37.0
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 2.7e-16 89.4 118 39.0
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 2.7e-16 89.4 142 35.9
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 2.3e-15 86.3 158 34.2
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 2.3e-15 86.3 143 38.5
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 3.8e-15 85.5 129 40.3
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 3.8e-15 85.5 129 40.3
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 3.8e-15 85.5 105 42.9
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 8.6e-15 84.3 140 34.3
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 1.1e-14 84.0 166 36.7
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.5e-14 83.6 105 42.9
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 1.5e-14 83.6 103 42.7
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 2.5e-14 82.8 172 33.1
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 5.6e-14 81.6 155 33.5
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 2.1e-13 79.7 102 42.2
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 4.7e-13 78.6 132 28.8
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 4.7e-13 78.6 107 41.1
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 6.8e-12 74.7 71 54.9
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 1.7e-10 70.1 139 31.7
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 2.2e-10 69.7 138 29.0
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 4.1e-09 65.5 125 34.4
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 3.5e-08 62.4 98 36.7
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 2.3e-07 59.7 99 40.4
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 5.0e-07 58.5 92 34.8
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.5e-06 57.0 64 46.9
unitig_748.g8305 Utricularia gibba HOM05D000336 ORTHO05D002705 3.3e-06 55.8 137 29.2
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 4.3e-06 55.5 64 46.9
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 7.3e-06 54.7 103 30.1


User provided reference genes

Program Settings