Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27532 Brassica carinata HOM05D008883 ORTHO05D011075 1.2e-194 682.9 347 100.0
BcaB08g35019 Brassica carinata HOM05D008883 ORTHO05D011075 5.4e-97 358.6 191 92.7
BcaC05g29665 Brassica carinata HOM05D008883 ORTHO05D011075 3.9e-79 299.3 191 75.9
C08p54100 Brassica napus HOM05D008883 ORTHO05D011075 1.1e-78 297.7 191 75.4
BolC8t52918H Brassica oleracea HOM05D008883 ORTHO05D011075 1.1e-78 297.7 191 75.4
A09p69280 Brassica napus HOM05D008883 ORTHO05D011075 9.0e-52 208.4 140 75.0
SpUn0003_0120 Schrenkiella parvula HOM05D008883 ORTHO05D011075 3.2e-49 199.9 183 53.0
SpUn0486_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 4.3e-46 189.5 192 49.5
BcaC04g20437 Brassica carinata HOM05D008883 ORTHO05D011075 8.1e-45 185.3 114 80.7
SpUn1191_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.6e-40 171.0 153 51.6
Sp5g18780 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.5e-38 164.5 153 51.6
SpUn1299_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 2.1e-37 160.6 152 51.3
CARHR158160 Cardamine hirsuta HOM05D008883 ORTHO05D011075 7.6e-35 152.1 190 41.6
CARHR108020 Cardamine hirsuta HOM05D008883 ORTHO05D011075 2.5e-33 147.1 159 43.4
Sp5g18640 Schrenkiella parvula HOM05D008883 ORTHO05D011075 3.2e-33 146.7 189 42.3
Sp3g24800 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.2e-32 144.8 184 42.4
BcaC04g20436 Brassica carinata HOM05D008883 ORTHO05D011075 3.0e-31 140.2 180 40.6
BcaC04g20434 Brassica carinata HOM05D008883 ORTHO05D011075 1.5e-30 137.9 176 42.0
A09p69320 Brassica napus HOM05D008883 ORTHO05D011075 4.3e-30 136.3 176 41.5
BolC8t52922H Brassica oleracea HOM05D008883 ORTHO05D011075 4.3e-30 136.3 176 41.5
Sp7g07010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.0e-23 115.2 191 36.1
A09p69290 Brassica napus HOM05D008883 ORTHO05D011075 1.8e-23 114.4 180 36.1
BolC8t52919H Brassica oleracea HOM05D008883 ORTHO05D011075 1.8e-23 114.4 180 36.1
Sp7g05080 Schrenkiella parvula HOM05D008883 ORTHO05D011075 5.1e-23 112.8 147 41.5
SpUn0001_0500 Schrenkiella parvula HOM05D008883 ORTHO05D011075 7.7e-19 99.0 188 38.3
C08p54140 Brassica napus HOM05D008883 ORTHO05D011075 1.3e-18 98.2 116 42.2
BcaC05g29663 Brassica carinata HOM05D008883 ORTHO05D011075 2.9e-18 97.1 176 35.8
BcaC07g37010 Brassica carinata HOM05D000977 ORTHO05D001094 3.8e-18 96.7 46 91.3
SpUn0002_0140 Schrenkiella parvula HOM05D008883 ORTHO05D011075 5.0e-18 96.3 82 52.4
BcaC04g21808 Brassica carinata HOM05D000977 ORTHO05D001094 8.5e-18 95.5 46 91.3
BcaC05g27348 Brassica carinata HOM05D000977 ORTHO05D001094 8.5e-18 95.5 46 91.3
BcaC03g16184 Brassica carinata HOM05D000977 ORTHO05D001094 1.1e-17 95.1 46 91.3
SpUn0011_0050 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.4e-17 94.7 116 44.8
SpUn0052_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.4e-17 94.7 116 44.8
SpUn0057_0050 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.4e-17 94.7 116 44.8
BcaC04g21434 Brassica carinata HOM05D000977 ORTHO05D001094 3.2e-17 93.6 46 87.0
BcaC03g13938 Brassica carinata HOM05D000977 ORTHO05D001094 9.4e-17 92.0 54 77.8
BcaC05g28524 Brassica carinata HOM05D000977 ORTHO05D001094 9.4e-17 92.0 49 81.6
BcaC05g28638 Brassica carinata HOM05D000977 ORTHO05D001094 9.4e-17 92.0 46 89.1
BolC5t31468H Brassica oleracea HOM05D000977 ORTHO05D001094 9.4e-17 92.0 46 87.0
BcaC08g44291 Brassica carinata HOM05D000977 ORTHO05D001094 1.8e-15 87.8 46 84.8
BcaC03g14593 Brassica carinata HOM05D000977 ORTHO05D001094 2.0e-14 84.3 59 72.9
BcaC06g36209 Brassica carinata HOM05D000977 ORTHO05D002086 2.0e-14 84.3 59 71.2
Sp1g33150 Schrenkiella parvula HOM05D008883 ORTHO05D011075 7.4e-14 82.4 135 31.9
BcaC04g21433 Brassica carinata HOM05D000977 ORTHO05D095650 1.3e-13 81.6 59 67.8
BcaB05g22932 Brassica carinata HOM05D007693 ORTHO05D002086 3.7e-13 80.1 59 66.1
BcaC05g25865 Brassica carinata HOM05D000977 ORTHO05D001094 3.7e-13 80.1 59 69.5
BolC5t34129H Brassica oleracea HOM05D000977 ORTHO05D001094 4.8e-13 79.7 59 67.8
BcaC08g44077 Brassica carinata HOM05D000977 ORTHO05D002086 1.1e-12 78.6 75 54.7
BolC5t33108H Brassica oleracea HOM05D000977 ORTHO05D001094 1.1e-12 78.6 67 59.7
BcaC08g44703 Brassica carinata HOM05D000977 ORTHO05D002086 1.4e-12 78.2 59 64.4
BcaC07g37330 Brassica carinata HOM05D000977 ORTHO05D002086 1.8e-12 77.8 54 68.5
BcaC08g44290 Brassica carinata HOM05D007693 ORTHO05D002086 9.1e-12 75.5 59 66.1
BcaB01g02498 Brassica carinata HOM05D000977 ORTHO05D095395 1.2e-11 75.1 59 59.3
BcaB05g24372 Brassica carinata HOM05D000977 ORTHO05D093251 1.2e-11 75.1 59 59.3
BcaB06g25645 Brassica carinata HOM05D000977 ORTHO05D094941 1.2e-11 75.1 59 59.3
BcaC05g28328 Brassica carinata HOM05D000977 ORTHO05D094316 1.2e-11 75.1 54 66.7
BcaC03g14189 Brassica carinata HOM05D000977 ORTHO05D001094 3.5e-11 73.6 59 61.0
BcaC05g28526 Brassica carinata HOM05D000977 ORTHO05D002086 3.5e-11 73.6 59 64.4
BcaC06g34108 Brassica carinata HOM05D000977 ORTHO05D001094 3.5e-11 73.6 59 61.0
BolC8t47992H Brassica oleracea HOM05D007693 ORTHO05D002086 3.5e-11 73.6 59 61.0
BcaB08g35020 Brassica carinata HOM05D008883 ORTHO05D011075 4.5e-11 73.2 78 44.9
Sp6g12610 Schrenkiella parvula HOM05D008883 ORTHO05D011075 5.9e-11 72.8 147 29.3
SpUn0015_0030 Schrenkiella parvula HOM05D008883 ORTHO05D011075 5.9e-11 72.8 147 29.3
SpUn0039_0060 Schrenkiella parvula HOM05D008883 ORTHO05D011075 5.9e-11 72.8 147 29.3
CARHR101890 Cardamine hirsuta HOM05D008292 ORTHO05D003352 1.3e-10 71.6 135 31.1
BcaC06g33964 Brassica carinata HOM05D000977 ORTHO05D001094 2.2e-10 70.9 59 62.7
AT2G35280 Arabidopsis thaliana HOM05D008292 ORTHO05D003352 3.8e-10 70.1 135 31.1
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 3.8e-10 70.1 126 34.1
BcaC02g11475 Brassica carinata HOM05D007693 ORTHO05D002086 6.5e-10 69.3 67 55.2
BcaC08g44858 Brassica carinata HOM05D000977 ORTHO05D090307 6.5e-10 69.3 59 62.7
BcaC09g50062 Brassica carinata HOM05D000977 ORTHO05D001094 6.5e-10 69.3 59 62.7
BraA08t34531Z Brassica rapa HOM05D008292 ORTHO05D003352 6.5e-10 69.3 150 28.7
BolC6t36539H Brassica oleracea HOM05D000977 ORTHO05D001094 8.5e-10 68.9 46 65.2
BolC9t54029H Brassica oleracea HOM05D000977 ORTHO05D001094 8.5e-10 68.9 46 65.2
AL8G28420 Arabidopsis lyrata HOM05D003839 ORTHO05D003352 1.5e-09 68.2 181 27.6
BcaC02g07774 Brassica carinata HOM05D000977 ORTHO05D001094 1.5e-09 68.2 59 61.0
BcaC04g19406 Brassica carinata HOM05D000977 ORTHO05D001094 1.9e-09 67.8 43 79.1
BolC8t47989H Brassica oleracea HOM05D000977 ORTHO05D001094 1.9e-09 67.8 46 63.0
Thhalv10002269m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.9e-09 67.8 135 31.9
Manes.12G023850 Manihot esculenta HOM05D002915 ORTHO05D003004 1.9e-09 67.8 163 29.4
BcaC06g36717 Brassica carinata HOM05D000977 ORTHO05D002086 2.5e-09 67.4 59 61.0
Sp7g05660 Schrenkiella parvula HOM05D008883 ORTHO05D011075 3.2e-09 67.0 147 29.3
Manes.12G014800 Manihot esculenta HOM05D002915 ORTHO05D003004 4.2e-09 66.6 163 29.4
BcaB01g00999 Brassica carinata HOM05D008292 ORTHO05D003352 5.5e-09 66.2 176 25.0
A06p31440 Brassica napus HOM05D008292 ORTHO05D003352 7.2e-09 65.9 156 26.3
BolC2t12326H Brassica oleracea HOM05D008292 ORTHO05D003352 7.2e-09 65.9 150 28.0
C09p33270 Brassica napus HOM05D008292 ORTHO05D003352 9.4e-09 65.5 176 26.1
BolC9t56163H Brassica oleracea HOM05D008292 ORTHO05D003352 9.4e-09 65.5 176 26.1
BcaC03g17703 Brassica carinata HOM05D008292 ORTHO05D003352 1.2e-08 65.1 150 27.3
BolC2t11778H Brassica oleracea HOM05D008292 ORTHO05D003352 1.2e-08 65.1 150 27.3
Manes.13G015600 Manihot esculenta HOM05D002915 ORTHO05D003004 1.2e-08 65.1 163 30.1
Atru.chr1.711 Acer truncatum HOM05D002915 ORTHO05D003004 1.6e-08 64.7 166 30.7
C03p32250 Brassica napus HOM05D008292 ORTHO05D003352 1.6e-08 64.7 174 26.4
C09p44350 Brassica napus HOM05D000977 ORTHO05D001094 1.6e-08 64.7 45 64.4
BcaNung06783 Brassica carinata HOM05D000977 ORTHO05D095289 2.1e-08 64.3 50 62.0
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 2.1e-08 64.3 170 25.3
A01p17040 Brassica napus HOM05D008292 ORTHO05D003352 2.7e-08 63.9 179 26.3
BraA09t39508Z Brassica rapa HOM05D008292 ORTHO05D003352 2.7e-08 63.9 179 26.3
BcaB04g16904 Brassica carinata HOM05D008292 ORTHO05D003352 3.6e-08 63.5 181 24.9
BcaNung06308 Brassica carinata HOM05D008292 ORTHO05D003352 3.6e-08 63.5 170 26.5
Manes.11G084185 Manihot esculenta HOM05D002915 ORTHO05D003004 3.6e-08 63.5 162 27.2
BcaC03g15793 Brassica carinata HOM05D008292 ORTHO05D003352 4.7e-08 63.2 149 26.8
BcaC09g50777 Brassica carinata HOM05D000977 ORTHO05D001094 4.7e-08 63.2 45 68.9
A05p32880 Brassica napus HOM05D008292 ORTHO05D003352 4.7e-08 63.2 153 26.8
BraA05t22695Z Brassica rapa HOM05D008292 ORTHO05D003352 4.7e-08 63.2 153 26.8
A09p40840 Brassica napus HOM05D008292 ORTHO05D003352 8.0e-08 62.4 149 26.2
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 8.0e-08 62.4 132 31.1
C07p08430 Brassica napus HOM05D008292 ORTHO05D003352 1.0e-07 62.0 174 25.9
Thhalv10005434m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.0e-07 62.0 170 27.1
BcaC05g29664 Brassica carinata HOM05D008883 ORTHO05D011075 1.4e-07 61.6 67 41.8
Atru.chr1.712 Acer truncatum HOM05D002915 ORTHO05D003004 1.8e-07 61.2 166 29.5
BolC4t27064H Brassica oleracea HOM05D008292 ORTHO05D003352 1.8e-07 61.2 153 26.8
BraA07t28801Z Brassica rapa HOM05D003839 ORTHO05D003352 1.8e-07 61.2 167 25.7
BcaC06g36055 Brassica carinata HOM05D008292 ORTHO05D003352 3.0e-07 60.5 170 25.9
A09p20270 Brassica napus HOM05D003839 ORTHO05D003352 3.0e-07 60.5 167 25.1
C03p19740 Brassica napus HOM05D008292 ORTHO05D003352 5.2e-07 59.7 140 27.1
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 5.2e-07 59.7 120 29.2
BolC8t48638H Brassica oleracea HOM05D000977 ORTHO05D001094 6.7e-07 59.3 45 60.0
Potri.013G008800 Populus trichocarpa HOM05D002915 ORTHO05D003004 6.7e-07 59.3 171 24.0
Atru.chr11.2244 Acer truncatum HOM05D002915 ORTHO05D003004 8.8e-07 58.9 162 31.5
Atru.chr11.2259 Acer truncatum HOM05D002915 ORTHO05D003004 8.8e-07 58.9 162 31.5
C06p24070 Brassica napus HOM05D018430 ORTHO05D020143 8.8e-07 58.9 65 40.0
Haze_24934 Corylus avellana HOM05D002915 ORTHO05D003004 8.8e-07 58.9 126 33.3
Hma1.2p1_0167F.1_g073810 Hydrangea macrophylla HOM05D002915 ORTHO05D003004 8.8e-07 58.9 172 26.7
Potri.001G321400 Populus trichocarpa HOM05D002915 ORTHO05D003004 1.1e-06 58.5 131 29.0
Psat4g025920 Pisum sativum HOM05D002915 ORTHO05D003004 1.5e-06 58.2 225 27.1
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 1.5e-06 58.2 124 33.1
C09p21410 Brassica napus HOM05D003839 ORTHO05D003352 2.0e-06 57.8 163 24.5
Thhalv10005441m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 2.0e-06 57.8 136 27.9
Medtr4g119850 Medicago truncatula HOM05D002915 ORTHO05D003004 2.0e-06 57.8 163 27.6
Psat0s1573g0120 Pisum sativum HOM05D002915 ORTHO05D003004 2.0e-06 57.8 127 31.5
TPR.G23884 Trifolium pratense HOM05D002915 ORTHO05D003004 2.6e-06 57.4 124 34.7
BcaC03g15888 Brassica carinata HOM05D008292 ORTHO05D003352 3.3e-06 57.0 128 27.3
BcaC04g22280 Brassica carinata HOM05D003839 ORTHO05D003352 3.3e-06 57.0 139 27.3
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 3.3e-06 57.0 122 30.3
Thhalv10003388m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 4.4e-06 56.6 89 33.7
BcaC07g37399 Brassica carinata HOM05D008292 ORTHO05D003352 7.5e-06 55.8 135 28.1
BolC3t15567H Brassica oleracea HOM05D008292 ORTHO05D003352 7.5e-06 55.8 136 27.2
BraA09t40513Z Brassica rapa HOM05D003839 ORTHO05D003352 9.7e-06 55.5 106 27.4
Thhalv10027513m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 9.7e-06 55.5 126 28.6
PGSC0003DMG400043877 Solanum tuberosum HOM05D002915 ORTHO05D003004 9.7e-06 55.5 171 26.3


User provided reference genes

Program Settings