Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.2e-147 526.6 284 100.0
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 6.1e-139 497.7 289 89.6
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 7.9e-139 497.3 289 90.3
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 5.5e-132 474.6 289 85.5
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 4.7e-131 471.5 289 83.7
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.0e-130 470.3 285 85.6
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 1.5e-126 456.4 285 84.2
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 1.8e-122 443.0 285 83.9
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 8.2e-120 434.1 270 85.2
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 3.1e-119 432.2 270 83.7
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 4.2e-116 421.8 233 89.3
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 6.1e-115 417.9 291 75.9
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.6e-113 412.5 289 74.0
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 3.5e-110 402.1 287 72.1
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 3.4e-105 385.6 248 76.6
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 5.7e-105 384.8 243 77.0
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 2.2e-104 382.9 237 76.8
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 3.5e-102 375.6 285 67.4
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 4.5e-102 375.2 284 67.3
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 7.7e-102 374.4 285 67.0
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 3.8e-101 372.1 243 74.1
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 8.6e-101 370.9 244 73.8
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 8.6e-101 370.9 244 73.8
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 1.1e-100 370.5 226 77.0
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 2.5e-100 369.4 236 74.2
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.6e-100 368.2 227 76.7
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 9.5e-100 367.5 267 70.0
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.6e-99 366.7 237 73.8
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.7e-99 365.2 229 74.2
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 4.7e-99 365.2 221 77.4
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 4.7e-99 365.2 227 76.7
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 6.1e-99 364.8 289 63.7
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.4e-98 363.6 242 71.9
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.4e-98 363.6 244 71.3
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.3e-98 362.8 229 75.1
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.3e-98 362.8 227 74.9
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 2.3e-98 362.8 244 71.3
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.0e-98 362.5 227 76.2
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 5.2e-98 361.7 227 74.4
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 5.2e-98 361.7 244 71.3
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.2e-98 361.7 227 76.2
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 6.8e-98 361.3 258 69.4
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 8.9e-98 360.9 242 71.9
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 8.9e-98 360.9 237 72.2
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 5.7e-97 358.2 227 75.3
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 5.7e-97 358.2 221 77.4
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 7.5e-97 357.8 245 71.4
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.3e-96 357.1 244 70.5
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.9e-96 355.9 283 62.9
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 3.7e-96 355.5 237 71.7
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 3.7e-96 355.5 229 74.7
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.4e-95 353.6 235 71.5
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.4e-95 353.6 221 75.1
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 4.1e-95 352.1 237 70.5
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.4e-95 351.7 283 62.2
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.6e-94 350.1 237 70.5
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 2.7e-94 349.4 234 73.1
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 2.7e-94 349.4 227 73.1
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 5.9e-94 348.2 282 63.1
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 5.9e-94 348.2 235 71.1
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 3.0e-93 345.9 229 71.2
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 5.0e-93 345.1 235 69.8
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 1.1e-92 344.0 237 68.8
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.5e-92 343.6 234 70.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.9e-92 343.2 234 69.2
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 1.9e-92 343.2 237 72.2
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 3.3e-92 342.4 246 68.3
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 5.6e-92 341.7 242 68.6
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 5.6e-92 341.7 239 69.9
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 7.3e-92 341.3 227 71.8
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 9.5e-92 340.9 229 71.2
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.2e-91 340.5 231 70.1
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 2.8e-91 339.3 228 71.1
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 3.6e-91 339.0 232 71.1
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 4.7e-91 338.6 239 68.6
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 6.2e-91 338.2 230 70.4
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.0e-90 337.4 220 70.9
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.4e-90 337.0 221 72.4
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.8e-90 336.7 179 92.2
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 3.1e-90 335.9 249 65.9
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 2.6e-89 332.8 239 66.1
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 9.8e-89 330.9 230 70.0
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.3e-88 330.5 230 70.0
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 6.4e-88 328.2 227 69.6
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 8.3e-88 327.8 259 62.9
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 8.3e-88 327.8 233 68.2
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.1e-87 325.5 242 66.9
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.0e-85 320.9 277 60.3
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 6.6e-85 318.2 233 66.1
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.1e-84 317.4 267 59.6
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.4e-82 310.5 201 71.6
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 1.8e-82 310.1 202 74.3
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 3.1e-82 309.3 284 59.5
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 6.8e-82 308.1 230 64.3
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 6.8e-82 308.1 221 66.5
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 3.4e-81 305.8 230 61.3
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 9.2e-79 297.7 242 62.4
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.3e-77 293.9 201 69.7
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.1e-76 290.8 234 62.4
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.9e-76 290.0 183 76.0
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 2.5e-76 289.7 229 59.8
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 3.3e-76 289.3 253 58.1
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 9.5e-76 287.7 229 61.1
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 9.5e-76 287.7 172 76.7
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.4e-74 283.9 221 64.3
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 5.2e-74 282.0 183 74.9
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.2e-73 280.8 231 59.3
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.3e-72 277.3 203 67.0
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 3.7e-72 275.8 175 78.3
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.9e-71 273.5 247 58.3
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 4.3e-68 262.3 237 56.1
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.2e-63 246.1 236 57.2
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 2.1e-62 243.4 168 69.6
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 4.4e-57 225.7 193 58.5
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 7.1e-55 218.4 233 50.6
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 6.9e-50 201.8 265 42.3
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 7.9e-46 188.3 126 73.8
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 2.3e-45 186.8 309 38.8
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 1.3e-43 181.0 261 41.0
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.5e-41 174.1 127 64.6
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 5.8e-41 172.2 113 73.5
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.8e-41 172.2 246 44.3
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 1.4e-39 167.5 189 57.1
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 4.2e-39 166.0 120 64.2
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.5e-36 157.5 119 65.5
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.2e-33 147.9 116 62.1
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.3e-29 134.4 193 38.9
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 2.8e-27 126.7 77 80.5
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 1.7e-24 117.5 72 73.6
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.7e-24 117.5 78 71.8
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 3.2e-23 113.2 81 65.4
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.3e-20 102.8 56 85.7
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 8.8e-13 78.6 77 55.8
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 1.5e-12 77.8 81 50.6


User provided reference genes

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