Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27526 Brassica carinata HOM05D004230 ORTHO05D007976 2.8e-230 801.6 403 100.0
BcaB05g22709 Brassica carinata HOM05D004230 ORTHO05D007976 5.0e-163 578.2 531 62.5
A06p45730 Brassica napus HOM05D004230 ORTHO05D007976 2.3e-155 552.7 504 63.5
BraA06t26555Z Brassica rapa HOM05D004230 ORTHO05D007976 5.4e-149 531.6 368 77.2
BcaC05g28003 Brassica carinata HOM05D004230 ORTHO05D007976 3.6e-145 518.8 434 68.2
BolC5t32761H Brassica oleracea HOM05D004230 ORTHO05D007976 4.0e-136 488.8 515 56.9
C05p40190 Brassica napus HOM05D004230 ORTHO05D007976 7.1e-133 478.0 348 74.1
C02p00010 Brassica napus HOM05D004230 ORTHO05D007976 1.3e-99 367.5 238 80.3
BcaB07g32504 Brassica carinata HOM05D004230 ORTHO05D007976 6.7e-99 365.2 470 45.7
BraA03t13046Z Brassica rapa HOM05D004230 ORTHO05D007976 1.7e-94 350.5 371 51.8
BolC3t20706H Brassica oleracea HOM05D004230 ORTHO05D007976 1.4e-93 347.4 254 72.8
Sp4g02630 Schrenkiella parvula HOM05D004230 ORTHO05D007976 5.1e-91 339.0 327 55.4
BcaC06g34422 Brassica carinata HOM05D004230 ORTHO05D007976 5.7e-90 335.5 430 50.0
BcaC07g36911 Brassica carinata HOM05D004230 ORTHO05D007976 9.4e-77 291.6 403 44.4
C07p48530 Brassica napus HOM05D004230 ORTHO05D007976 1.0e-75 288.1 387 44.4
BolC7t45361H Brassica oleracea HOM05D004230 ORTHO05D007976 1.0e-75 288.1 387 44.4
BcaC03g16826 Brassica carinata HOM05D004230 ORTHO05D007976 4.4e-74 282.7 452 41.4
BolC2t08696H Brassica oleracea HOM05D004230 ORTHO05D007976 9.7e-74 281.6 387 43.7
BolC3t17847H Brassica oleracea HOM05D004230 ORTHO05D007976 1.1e-72 278.1 401 42.6
BcaC05g28343 Brassica carinata HOM05D004230 ORTHO05D007976 2.9e-70 270.0 351 44.7
BraA10t43214Z Brassica rapa HOM05D004230 ORTHO05D007976 2.1e-68 263.8 150 87.3
BcaB05g23135 Brassica carinata HOM05D004230 ORTHO05D007976 1.4e-67 261.2 355 44.5
C07p50550 Brassica napus HOM05D004230 ORTHO05D007976 3.9e-67 259.6 388 42.0
BcaC08g43996 Brassica carinata HOM05D004230 ORTHO05D007976 5.2e-67 259.2 352 43.8
BcaB01g00472 Brassica carinata HOM05D004230 ORTHO05D007976 1.5e-66 257.7 315 47.6
BcaC02g09042 Brassica carinata HOM05D004230 ORTHO05D007976 2.2e-65 253.8 337 44.2
BcaC03g15070 Brassica carinata HOM05D004230 ORTHO05D007976 1.1e-64 251.5 337 44.2
BcaC09g49286 Brassica carinata HOM05D004230 ORTHO05D007976 1.7e-62 244.2 350 44.6
C01p36620 Brassica napus HOM05D004230 ORTHO05D007976 1.1e-61 241.5 300 45.7
BraA01t02220Z Brassica rapa HOM05D004230 ORTHO05D007976 1.1e-61 241.5 348 42.8
BcaC09g49449 Brassica carinata HOM05D004230 ORTHO05D007976 6.1e-60 235.7 349 42.1
C06p14020 Brassica napus HOM05D004230 ORTHO05D007976 1.4e-59 234.6 378 40.5
AT3G30520 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 5.2e-59 232.6 267 49.8
BraA06t24715Z Brassica rapa HOM05D004230 ORTHO05D007976 5.2e-59 232.6 284 47.5
C05p44100 Brassica napus HOM05D004230 ORTHO05D007976 2.6e-58 230.3 374 40.1
BcaC09g52278 Brassica carinata HOM05D004230 ORTHO05D007976 4.4e-58 229.6 284 45.8
BolC1t02226H Brassica oleracea HOM05D004230 ORTHO05D007976 4.4e-58 229.6 284 45.8
BraA06t25864Z Brassica rapa HOM05D004230 ORTHO05D018474 6.3e-57 225.7 223 60.5
C01p40550 Brassica napus HOM05D004230 ORTHO05D007976 1.1e-56 224.9 297 45.5
Carub.0007s3043 Capsella rubella HOM05D004230 ORTHO05D007976 1.4e-56 224.6 303 45.2
BraA09t39059Z Brassica rapa HOM05D004230 ORTHO05D007976 9.1e-56 221.9 387 38.8
BolC4t28062H Brassica oleracea HOM05D004230 ORTHO05D007976 3.8e-54 216.5 290 44.8
A09p35300 Brassica napus HOM05D004230 ORTHO05D007976 4.2e-53 213.0 316 41.8
BolC2t08058H Brassica oleracea HOM05D004230 ORTHO05D007976 7.2e-53 212.2 342 38.6
C01p22970 Brassica napus HOM05D004230 ORTHO05D007976 1.2e-52 211.5 277 44.8
C07p15900 Brassica napus HOM05D004230 ORTHO05D007976 1.4e-51 208.0 342 38.6
BcaB06g26529 Brassica carinata HOM05D004230 ORTHO05D007976 1.8e-51 207.6 291 43.3
C01p22920 Brassica napus HOM05D004230 ORTHO05D007976 4.0e-51 206.5 277 44.0
BolC7t42083H Brassica oleracea HOM05D004230 ORTHO05D007976 8.8e-51 205.3 342 38.3
BolC8t50322H Brassica oleracea HOM05D004230 ORTHO05D007976 2.0e-50 204.1 334 38.9
BolC6t36485H Brassica oleracea HOM05D004230 ORTHO05D007976 5.7e-50 202.6 373 39.1
AL7G44480 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 7.5e-50 202.2 234 46.6
A06p20520 Brassica napus HOM05D004230 ORTHO05D007976 6.3e-49 199.1 443 35.0
AL5G20550 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 1.4e-48 198.0 333 40.8
AL5G11160 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 2.4e-48 197.2 215 49.3
A03p38990 Brassica napus HOM05D004230 ORTHO05D007976 2.4e-48 197.2 366 38.0
AT3G32904 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 5.4e-48 196.1 297 41.8
AT1G43720 Arabidopsis thaliana HOM05D004230 ORTHO05D018474 3.8e-46 189.9 229 49.8
BcaB07g32180 Brassica carinata HOM05D004230 ORTHO05D007976 3.8e-46 189.9 342 38.6
C01p22890 Brassica napus HOM05D004230 ORTHO05D007976 6.5e-46 189.1 204 48.5
BcaC05g25838 Brassica carinata HOM05D004230 ORTHO05D007976 8.6e-46 188.7 290 40.7
BcaC01g03708 Brassica carinata HOM05D004230 ORTHO05D007976 1.6e-44 184.5 279 39.8
BolC5t30511H Brassica oleracea HOM05D004230 ORTHO05D007976 6.1e-44 182.6 278 42.1
BraA03t15403Z Brassica rapa HOM05D004230 ORTHO05D007976 2.0e-42 177.6 292 39.7
C04p52580 Brassica napus HOM05D004230 ORTHO05D007976 3.4e-42 176.8 230 46.5
C08p01070 Brassica napus HOM05D004230 ORTHO05D007976 4.4e-42 176.4 220 44.5
AT3G42870 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 7.0e-40 169.1 294 41.8
C02p19260 Brassica napus HOM05D004230 ORTHO05D007976 7.0e-40 169.1 129 64.3
AT1G35820 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 1.6e-39 167.9 340 37.1
A06p33150 Brassica napus HOM05D004230 ORTHO05D007976 2.9e-38 163.7 207 44.9
BolC1t03622H Brassica oleracea HOM05D004230 ORTHO05D007976 3.8e-38 163.3 206 45.1
Carub.0007s3044 Capsella rubella HOM05D004230 ORTHO05D007976 3.8e-38 163.3 285 37.9
SpUn0171_0010 Schrenkiella parvula HOM05D004230 ORTHO05D007976 5.0e-38 162.9 272 38.2
Sp3g24280 Schrenkiella parvula HOM05D004230 ORTHO05D007976 6.6e-38 162.5 336 33.9
Carub.0007s3042 Capsella rubella HOM05D004230 ORTHO05D007976 8.6e-38 162.2 249 41.4
A09p29770 Brassica napus HOM05D004230 ORTHO05D007976 8.0e-36 155.6 146 64.4
BolC3t18593H Brassica oleracea HOM05D004230 ORTHO05D018474 4.0e-35 153.3 170 50.0
C07p28690 Brassica napus HOM05D004230 ORTHO05D007976 5.2e-35 152.9 324 35.8
BolC7t43407H Brassica oleracea HOM05D004230 ORTHO05D007976 5.2e-35 152.9 324 35.8
BraA06t26245Z Brassica rapa HOM05D004230 ORTHO05D007976 8.9e-35 152.1 151 51.0
BcaC01g02567 Brassica carinata HOM05D004230 ORTHO05D018474 1.5e-34 151.4 170 50.0
Sp4g09110 Schrenkiella parvula HOM05D004230 ORTHO05D000563 2.0e-34 151.0 389 32.1
BcaC02g08607 Brassica carinata HOM05D004230 ORTHO05D018474 3.4e-34 150.2 185 48.6
C07p53510 Brassica napus HOM05D004230 ORTHO05D027608 4.4e-34 149.8 224 41.1
C08p29240 Brassica napus HOM05D004230 ORTHO05D027608 4.4e-34 149.8 224 42.4
C08p27070 Brassica napus HOM05D004230 ORTHO05D007976 2.2e-33 147.5 120 58.3
CARHR102540 Cardamine hirsuta HOM05D004230 ORTHO05D007976 8.3e-33 145.6 147 50.3
BcaC02g08615 Brassica carinata HOM05D004230 ORTHO05D007976 3.2e-32 143.7 275 38.2
BcaC03g18110 Brassica carinata HOM05D004230 ORTHO05D007976 4.1e-32 143.3 93 68.8
Carub.0007s3045 Capsella rubella HOM05D004230 ORTHO05D007976 5.4e-32 142.9 174 45.4
BcaC07g39750 Brassica carinata HOM05D004230 ORTHO05D027608 1.2e-31 141.7 214 42.5
BolC8t50525H Brassica oleracea HOM05D004230 ORTHO05D027608 1.2e-31 141.7 214 42.5
AL8G19300 Arabidopsis lyrata HOM05D004230 ORTHO05D000037 1.3e-30 138.3 195 44.1
BolC4t26781H Brassica oleracea HOM05D004230 ORTHO05D018474 6.6e-30 136.0 160 49.4
BolC3t20713H Brassica oleracea HOM05D004230 ORTHO05D007976 1.1e-29 135.2 189 42.9
Carub.0012s0003 Capsella rubella HOM05D004230 ORTHO05D007976 1.1e-29 135.2 263 38.0
BolC2t12231H Brassica oleracea HOM05D004230 ORTHO05D018474 1.9e-29 134.4 154 52.6
BcaC01g00380 Brassica carinata HOM05D004230 ORTHO05D007976 2.5e-29 134.0 107 63.6
BraA05t21003Z Brassica rapa HOM05D004230 ORTHO05D041249 9.5e-29 132.1 125 60.0
A01p37400 Brassica napus HOM05D004230 ORTHO05D021768 3.6e-28 130.2 88 79.5
BolC2t12233H Brassica oleracea HOM05D004230 ORTHO05D007976 3.6e-28 130.2 124 53.2
A03p63250 Brassica napus HOM05D004230 ORTHO05D007976 5.2e-27 126.3 183 43.2
Carub.0005s0823 Capsella rubella HOM05D004230 ORTHO05D007976 3.4e-26 123.6 257 32.7
BolC3t20148H Brassica oleracea HOM05D004230 ORTHO05D007976 3.7e-25 120.2 118 54.2
Sp3g29180 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.4e-24 118.2 168 39.3
BolC8t46909H Brassica oleracea HOM05D004230 ORTHO05D007976 2.4e-24 117.5 143 46.2
C03p27680 Brassica napus HOM05D004230 ORTHO05D007976 3.2e-24 117.1 193 39.9
CARHR145800 Cardamine hirsuta HOM05D004230 ORTHO05D007976 3.5e-23 113.6 248 33.5
BcaB01g03013 Brassica carinata HOM05D004230 ORTHO05D007976 6.0e-23 112.8 68 82.4
BcaC09g49284 Brassica carinata HOM05D004230 ORTHO05D007976 6.0e-23 112.8 117 47.9
A06p33140 Brassica napus HOM05D004230 ORTHO05D007976 6.0e-23 112.8 174 41.4
BcaB01g01083 Brassica carinata HOM05D004230 ORTHO05D007976 2.3e-22 110.9 261 37.9
Carub.0007s3014 Capsella rubella HOM05D004230 ORTHO05D007976 3.3e-21 107.1 324 31.5
Sp5g19020 Schrenkiella parvula HOM05D004230 ORTHO05D007976 5.6e-21 106.3 218 33.5
AT5G36080 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 7.3e-21 105.9 122 44.3
AL8G23470 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 4.7e-20 103.2 123 46.3
BcaB04g18000 Brassica carinata HOM05D004230 ORTHO05D007976 8.1e-20 102.4 190 38.4
BcaB05g23937 Brassica carinata HOM05D004230 ORTHO05D021768 5.2e-19 99.8 89 66.3
BolC5t33361H Brassica oleracea HOM05D004230 ORTHO05D007976 5.2e-19 99.8 186 37.6
AL3G43870 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 6.8e-19 99.4 63 65.1
C01p41060 Brassica napus HOM05D004230 ORTHO05D021768 6.8e-19 99.4 96 55.2
BcaC09g49346 Brassica carinata HOM05D004230 ORTHO05D024011 8.9e-19 99.0 124 44.4
Sp2g07590 Schrenkiella parvula HOM05D004230 ORTHO05D007976 8.9e-19 99.0 310 28.1
AL6G45690 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 2.9e-17 94.0 63 63.5
C01p41050 Brassica napus HOM05D004230 ORTHO05D024011 3.7e-17 93.6 108 47.2
BolC1t04060H Brassica oleracea HOM05D004230 ORTHO05D024011 3.7e-17 93.6 108 47.2
C03p27690 Brassica napus HOM05D004230 ORTHO05D007976 6.4e-17 92.8 110 43.6
C05p46300 Brassica napus HOM05D004230 ORTHO05D007976 8.3e-17 92.4 110 44.5
BolC4t25589H Brassica oleracea HOM05D004230 ORTHO05D007976 8.3e-17 92.4 97 46.4
CARHR113870 Cardamine hirsuta HOM05D004230 ORTHO05D007976 8.3e-17 92.4 63 63.5
BolC3t17228H Brassica oleracea HOM05D004230 ORTHO05D007976 3.2e-16 90.5 113 42.5
BolC5t33360H Brassica oleracea HOM05D004230 ORTHO05D007976 4.1e-16 90.1 97 48.5
CARHR034450 Cardamine hirsuta HOM05D004230 ORTHO05D007976 3.0e-14 84.0 81 50.6
A04p10960 Brassica napus HOM05D037366 ORTHO05D042224 6.6e-14 82.8 46 80.4
BraA04t16761Z Brassica rapa HOM05D037366 ORTHO05D042224 6.6e-14 82.8 46 80.4
BolC4t26773H Brassica oleracea HOM05D004230 ORTHO05D007976 1.5e-13 81.6 98 45.9
Sp1g33580 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.4e-11 74.3 291 26.8
BcaC01g04898 Brassica carinata HOM05D004230 ORTHO05D007976 4.0e-11 73.6 41 87.8
C07p04500 Brassica napus HOM05D004230 ORTHO05D007976 4.0e-11 73.6 100 39.0
THA.LOC104819338 Tarenaya hassleriana HOM05D004230 ORTHO05D014126 3.4e-10 70.5 324 21.9
BolC7t40845H Brassica oleracea HOM05D004230 ORTHO05D007976 7.6e-10 69.3 100 38.0
BcaB08g35653 Brassica carinata HOM05D004230 ORTHO05D007976 4.9e-09 66.6 116 33.6
BraA06t25715Z Brassica rapa HOM05D004230 ORTHO05D007976 3.2e-08 63.9 43 62.8
A01p32040 Brassica napus HOM05D004230 ORTHO05D021768 9.2e-08 62.4 66 50.0
C05p15560 Brassica napus HOM05D004230 ORTHO05D018474 2.7e-07 60.8 53 50.9
Glyma.05G069200 Glycine max HOM05D000876 ORTHO05D000285 4.6e-07 60.1 123 29.3
C04p25730 Brassica napus HOM05D030526 ORTHO05D028078 6.0e-07 59.7 41 58.5
BolC4t24235H Brassica oleracea HOM05D030526 ORTHO05D028078 6.0e-07 59.7 41 58.5
AL7G46530 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 1.0e-06 58.9 72 38.9
C08p27080 Brassica napus HOM05D004230 ORTHO05D042725 1.3e-06 58.5 47 55.3
C03p63400 Brassica napus HOM05D030526 ORTHO05D028078 1.7e-06 58.2 38 60.5
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 1.7e-06 58.2 123 28.5
BraA06t26246Z Brassica rapa HOM05D004230 ORTHO05D042725 3.9e-06 57.0 47 51.1
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 3.9e-06 57.0 123 28.5
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 5.1e-06 56.6 123 28.5
A10p29520 Brassica napus HOM05D012682 ORTHO05D014126 8.7e-06 55.8 100 30.0
BolC5t31791H Brassica oleracea HOM05D006735 ORTHO05D009558 8.7e-06 55.8 115 29.6
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 8.7e-06 55.8 106 28.3


User provided reference genes

Program Settings