Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 1.9e-32 141.7 64 100.0
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 4.0e-22 107.5 60 81.7
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 5.2e-22 107.1 60 81.7
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 5.2e-22 107.1 60 81.7
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 6.8e-22 106.7 60 83.3
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 1.2e-21 105.9 60 80.0
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-21 105.1 60 81.7
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 2.0e-21 105.1 60 80.0
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-20 102.1 60 78.3
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 1.7e-20 102.1 60 78.3
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 1.7e-20 102.1 60 78.3
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 3.7e-20 100.9 60 76.7
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 3.7e-20 100.9 60 76.7
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 3.7e-20 100.9 60 76.7
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 3.7e-20 100.9 60 76.7
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 6.4e-20 100.1 60 76.7
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 5.4e-19 97.1 60 73.3
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 5.4e-19 97.1 60 76.7
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 9.2e-19 96.3 60 73.3
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 9.2e-19 96.3 60 73.3
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.0e-18 95.1 60 75.0
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-18 95.1 60 73.3
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 1.7e-17 92.0 60 71.7
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.0e-17 91.3 60 73.3
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 3.9e-17 90.9 60 68.3
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 6.6e-17 90.1 60 71.7
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 6.6e-17 90.1 60 71.7
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 6.6e-17 90.1 60 70.0
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 8.6e-17 89.7 60 68.3
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 8.6e-17 89.7 60 68.3
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.9e-16 88.6 60 71.7
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 1.9e-16 88.6 60 73.3
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.5e-16 88.2 60 68.3
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.5e-16 88.2 60 68.3
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.5e-16 88.2 60 68.3
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 4.3e-16 87.4 60 70.0
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 5.6e-16 87.0 60 70.0
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.6e-16 87.0 60 68.3
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 5.6e-16 87.0 60 66.7
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 5.6e-16 87.0 60 68.3
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 5.6e-16 87.0 60 68.3
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 5.6e-16 87.0 60 70.0
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 7.3e-16 86.7 60 61.7
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 7.3e-16 86.7 60 61.7
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 7.3e-16 86.7 60 66.7
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 9.5e-16 86.3 60 66.7
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 9.5e-16 86.3 60 70.0
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 1.2e-15 85.9 60 66.7
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 1.6e-15 85.5 60 61.7
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 1.6e-15 85.5 60 68.3
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 1.6e-15 85.5 60 70.0
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 1.6e-15 85.5 60 68.3
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 2.1e-15 85.1 60 66.7
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.1e-15 85.1 61 72.1
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 2.8e-15 84.7 60 68.3
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 4.7e-15 84.0 61 70.5
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 4.7e-15 84.0 60 66.7
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 6.2e-15 83.6 60 66.7
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 6.2e-15 83.6 60 61.7
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 6.2e-15 83.6 60 68.3
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 8.0e-15 83.2 60 66.7
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 8.0e-15 83.2 60 68.3
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 8.0e-15 83.2 60 66.7
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.0e-14 82.8 60 65.0
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.0e-14 82.8 60 65.0
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 1.0e-14 82.8 60 66.7
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 1.0e-14 82.8 60 66.7
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 1.4e-14 82.4 60 66.7
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.8e-14 82.0 60 63.3
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.8e-14 82.0 60 63.3
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 1.8e-14 82.0 61 67.2
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 3.1e-14 81.3 61 65.6
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 3.1e-14 81.3 60 60.0
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 3.1e-14 81.3 60 60.0
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 3.1e-14 81.3 60 66.7
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 4.0e-14 80.9 52 71.2
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 4.0e-14 80.9 52 71.2
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 4.0e-14 80.9 60 60.0
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 5.2e-14 80.5 60 66.7
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.2e-14 80.5 60 65.0
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 6.8e-14 80.1 62 69.4
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.8e-14 80.1 60 63.3
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 6.8e-14 80.1 60 65.0
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 8.9e-14 79.7 60 63.3
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 8.9e-14 79.7 59 66.1
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.9e-14 79.7 60 63.3
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 8.9e-14 79.7 61 65.6
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.2e-13 79.3 61 62.3
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.2e-13 79.3 61 63.9
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.2e-13 79.3 61 65.6
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.5e-13 79.0 60 60.0
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.0e-13 78.6 61 67.2
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.6e-13 78.2 61 67.2
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 2.6e-13 78.2 61 65.6
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 3.4e-13 77.8 61 67.2
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 3.4e-13 77.8 61 65.6
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 4.4e-13 77.4 61 63.9
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 5.8e-13 77.0 61 65.6
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 5.8e-13 77.0 61 63.9
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.5e-13 76.6 60 61.7
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 9.8e-13 76.3 61 63.9
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 9.8e-13 76.3 60 58.3
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 9.8e-13 76.3 60 61.7
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 9.8e-13 76.3 60 61.7
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 1.3e-12 75.9 61 57.4
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 2.2e-12 75.1 60 56.7
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 2.2e-12 75.1 61 62.3
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 2.2e-12 75.1 60 60.0
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 2.9e-12 74.7 40 82.5
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 2.9e-12 74.7 61 63.9
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 2.9e-12 74.7 60 56.7
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 2.9e-12 74.7 53 66.0
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 3.7e-12 74.3 60 61.7
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 3.7e-12 74.3 60 61.7
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 3.7e-12 74.3 60 55.0
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 3.7e-12 74.3 61 63.9
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.9e-12 73.9 60 61.7
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 8.3e-12 73.2 52 59.6
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 1.4e-11 72.4 61 57.4
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 1.4e-11 72.4 60 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 1.9e-11 72.0 60 56.7
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.2e-11 71.2 61 60.7
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 5.4e-11 70.5 60 51.7
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 7.0e-11 70.1 61 57.4
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 7.0e-11 70.1 60 60.0
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-10 68.6 41 75.6
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 2.7e-10 68.2 34 85.3
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 6.0e-10 67.0 48 68.8
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 7.8e-10 66.6 60 48.3
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 1.0e-09 66.2 60 51.7
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.3e-09 65.9 60 50.0
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.3e-09 65.9 60 50.0
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 6.6e-09 63.5 59 47.5
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.6e-09 63.2 60 50.0
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 8.6e-09 63.2 60 46.7
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 8.6e-09 63.2 60 46.7
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 8.6e-09 63.2 60 50.0
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 8.6e-09 63.2 60 50.0
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 6.2e-07 57.0 48 52.1
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.1e-06 56.2 45 51.1


User provided reference genes

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