Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 5.3e-50 200.7 99 100.0
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 6.5e-40 167.2 83 97.6
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 7.5e-36 153.7 92 85.9
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 7.5e-36 153.7 92 85.9
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 7.5e-36 153.7 92 85.9
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 7.5e-36 153.7 92 85.9
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 3.7e-35 151.4 92 83.7
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 6.3e-35 150.6 92 83.7
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 1.1e-34 149.8 92 83.7
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 2.4e-34 148.7 92 82.6
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 4.1e-34 147.9 92 82.6
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 4.1e-34 147.9 92 82.6
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 7.0e-34 147.1 92 81.5
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 7.0e-34 147.1 92 81.5
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 7.0e-34 147.1 92 81.5
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 9.2e-34 146.7 92 81.5
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 9.2e-34 146.7 92 81.5
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 1.2e-33 146.4 92 80.4
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-33 145.6 92 79.3
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 3.5e-33 144.8 92 80.4
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-31 139.8 67 100.0
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 5.6e-31 137.5 92 75.0
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 5.2e-29 131.0 69 92.8
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 5.9e-25 117.5 92 65.2
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.0e-24 116.7 94 66.0
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 5.0e-24 114.4 92 64.1
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 6.6e-24 114.0 92 60.9
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 1.5e-23 112.8 88 68.2
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.9e-23 112.5 92 64.1
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 1.9e-23 112.5 92 64.1
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 2.5e-23 112.1 92 67.4
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 3.3e-23 111.7 92 65.2
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 5.6e-23 110.9 92 64.1
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 5.6e-23 110.9 92 65.2
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 1.6e-22 109.4 93 66.7
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 2.1e-22 109.0 92 63.0
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 2.1e-22 109.0 92 65.2
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.1e-22 109.0 92 64.1
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.1e-22 109.0 92 64.1
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 6.2e-22 107.5 88 65.9
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 8.0e-22 107.1 92 65.2
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.1e-21 106.7 92 63.0
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.1e-21 106.7 92 62.0
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 1.4e-21 106.3 92 63.0
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.4e-21 106.3 92 62.0
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 1.8e-21 105.9 92 64.1
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 3.1e-21 105.1 95 57.9
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 3.1e-21 105.1 92 62.0
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 4.0e-21 104.8 93 58.1
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 5.2e-21 104.4 92 60.9
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 5.2e-21 104.4 92 57.6
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 6.8e-21 104.0 92 63.0
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 6.8e-21 104.0 92 63.0
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 6.8e-21 104.0 92 64.1
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 8.9e-21 103.6 92 60.9
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.2e-20 103.2 92 55.4
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 2.0e-20 102.4 92 57.6
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 3.4e-20 101.7 92 55.4
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 4.4e-20 101.3 92 62.0
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 4.4e-20 101.3 92 54.3
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 4.4e-20 101.3 92 56.5
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 4.4e-20 101.3 92 56.5
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 5.8e-20 100.9 92 59.8
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 7.5e-20 100.5 92 57.6
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 7.5e-20 100.5 92 56.5
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.3e-19 99.8 92 58.7
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 1.3e-19 99.8 92 58.7
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 1.7e-19 99.4 91 53.8
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 2.2e-19 99.0 92 58.7
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.2e-19 99.0 92 57.6
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.2e-19 99.0 92 57.6
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.7e-19 98.2 92 58.7
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 3.7e-19 98.2 92 59.8
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 4.9e-19 97.8 92 58.7
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.1e-18 96.7 92 55.4
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 1.1e-18 96.7 91 60.4
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.1e-18 96.7 97 57.7
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.4e-18 96.3 92 56.5
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.4e-18 96.3 92 54.3
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.4e-18 96.3 92 52.2
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 1.9e-18 95.9 92 58.7
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.9e-18 95.9 92 56.5
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 2.4e-18 95.5 92 50.0
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 2.4e-18 95.5 92 58.7
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 3.2e-18 95.1 91 57.1
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.2e-18 95.1 91 57.1
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 4.1e-18 94.7 92 55.4
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 5.4e-18 94.4 92 55.4
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 7.0e-18 94.0 103 51.5
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.0e-18 94.0 95 56.8
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 7.0e-18 94.0 104 52.9
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 7.0e-18 94.0 104 52.9
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 7.0e-18 94.0 92 58.7
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 9.2e-18 93.6 92 56.5
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 9.2e-18 93.6 92 55.4
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 9.2e-18 93.6 92 54.3
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.2e-17 93.2 91 57.1
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.2e-17 93.2 92 51.1
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.6e-17 92.8 92 56.5
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.6e-17 92.8 92 56.5
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.6e-17 92.8 92 54.3
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.0e-17 92.4 95 56.8
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 2.0e-17 92.4 92 56.5
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 2.0e-17 92.4 92 56.5
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 2.7e-17 92.0 91 51.6
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 2.7e-17 92.0 92 56.5
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 3.5e-17 91.7 92 56.5
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 4.6e-17 91.3 95 56.8
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.0e-17 90.9 94 54.3
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 7.8e-17 90.5 92 50.0
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.0e-16 90.1 94 52.1
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 1.0e-16 90.1 92 51.1
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.7e-16 89.4 92 50.0
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 2.3e-16 89.0 92 53.3
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 5.0e-16 87.8 92 52.2
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.6e-16 87.0 94 54.3
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.1e-15 86.7 92 48.9
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 1.5e-15 86.3 92 50.0
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.9e-15 85.9 92 51.1
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 1.9e-15 85.9 92 51.1
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 1.9e-15 85.9 82 54.9
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.3e-15 84.7 94 51.1
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 4.3e-15 84.7 102 46.1
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.2e-14 83.2 92 47.8
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 6.2e-14 80.9 91 47.3
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 8.1e-14 80.5 92 45.7
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.1e-13 80.1 92 50.0
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 3.1e-13 78.6 92 47.8
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.0e-13 78.2 91 42.9
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-12 76.6 91 42.9
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.6e-12 75.5 92 45.7
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.3e-11 73.2 92 47.8
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 2.2e-11 72.4 80 57.5
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.2e-11 72.4 90 41.1
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.1e-10 68.2 68 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 2.1e-09 65.9 91 41.8
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.7e-09 65.5 91 38.5
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.0e-08 63.5 84 38.1
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 1.3e-08 63.2 92 40.2
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 7.3e-07 57.4 102 35.3
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 2.1e-06 55.8 44 63.6


User provided reference genes

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