Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 0.0e+00 1288.1 656 100.0
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 0.0e+00 1133.2 699 86.0
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1115.9 699 85.1
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1114.4 698 84.5
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 0.0e+00 1111.3 701 84.0
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 2.2e-293 1011.9 693 76.8
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 2.8e-288 995.0 694 75.8
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 8.7e-274 946.8 694 71.5
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 7.4e-273 943.7 694 71.5
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 8.2e-272 940.3 694 71.3
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 5.3e-271 937.6 694 71.6
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 4.5e-254 881.3 701 67.0
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 1.1e-210 737.3 702 56.7
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 4.2e-159 565.8 731 45.4
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 6.1e-158 562.0 744 45.6
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 4.3e-156 555.8 737 45.0
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 7.7e-153 545.0 747 44.2
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 8.5e-152 541.6 741 44.9
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 4.2e-151 539.3 744 43.4
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 4.6e-150 535.8 741 44.1
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.0e-149 534.6 745 43.1
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 1.4e-149 534.3 738 42.5
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 1.8e-149 533.9 741 44.1
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 1.3e-147 527.7 741 42.8
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 1.3e-147 527.7 758 42.5
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 1.7e-147 527.3 699 44.5
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 1.1e-146 524.6 739 43.3
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 7.7e-145 518.5 705 44.1
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 1.3e-144 517.7 741 42.4
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 2.9e-144 516.5 722 42.7
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 1.1e-143 514.6 740 42.8
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 4.2e-143 512.7 723 43.8
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 2.1e-142 510.4 738 43.5
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 1.8e-141 507.3 712 43.0
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 6.7e-141 505.4 706 42.1
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 1.5e-140 504.2 700 44.0
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 9.7e-140 501.5 747 41.5
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 2.2e-139 500.4 724 41.7
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 3.7e-139 499.6 740 40.8
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 3.7e-139 499.6 713 41.7
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 1.8e-138 497.3 716 41.6
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 2.4e-138 496.9 732 41.8
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 4.1e-138 496.1 739 40.6
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 7.0e-138 495.4 726 42.4
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 2.6e-137 493.4 712 41.2
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 7.7e-137 491.9 717 41.4
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 1.0e-136 491.5 728 41.5
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 1.3e-136 491.1 734 41.4
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 1.5e-135 487.6 733 41.7
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 1.5e-135 487.6 721 42.7
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 5.5e-135 485.7 717 42.4
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 7.2e-135 485.3 742 41.5
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.6e-134 484.2 729 40.9
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 2.1e-134 483.8 711 42.5
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.0e-133 481.5 729 41.2
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 1.0e-133 481.5 732 41.3
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 1.4e-133 481.1 717 41.4
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 1.4e-133 481.1 717 41.1
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 6.7e-133 478.8 730 41.2
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 2.0e-132 477.2 729 40.3
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 9.7e-132 474.9 697 41.9
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 1.1e-130 471.5 697 41.8
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 1.4e-130 471.1 697 41.5
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.8e-130 470.7 729 40.1
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 2.4e-130 470.3 732 39.8
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 2.4e-130 470.3 690 40.7
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 9.1e-130 468.4 734 39.8
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 2.6e-129 466.8 718 40.3
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 7.7e-129 465.3 689 40.8
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 8.5e-128 461.8 712 42.0
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 3.2e-127 459.9 712 39.7
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 4.2e-127 459.5 716 40.5
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 1.6e-126 457.6 709 40.5
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 5.2e-125 452.6 720 40.1
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 5.2e-125 452.6 744 39.9
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 3.4e-124 449.9 729 39.9
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 3.4e-124 449.9 728 39.7
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 7.0e-122 442.2 722 40.0
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 1.7e-120 437.6 676 38.9
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 9.4e-119 431.8 712 38.8
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 2.7e-118 430.3 711 39.1
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 6.1e-118 429.1 696 39.2
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 1.2e-116 424.9 660 41.4
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 2.0e-116 424.1 720 38.3
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 7.5e-116 422.2 724 37.8
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-114 417.9 718 38.2
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 1.2e-113 414.8 562 42.5
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 2.0e-113 414.1 718 39.0
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 4.5e-113 412.9 694 37.5
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 7.7e-113 412.1 694 38.5
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 1.3e-112 411.4 885 33.6
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 2.9e-112 410.2 569 43.9
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 3.0e-109 400.2 611 40.9
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 3.4e-108 396.7 595 41.5
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 5.4e-106 389.4 714 35.6
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 5.6e-103 379.4 726 34.6
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 1.8e-101 374.4 680 37.2
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 2.7e-97 360.5 747 33.6
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 7.3e-95 352.4 586 39.4
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 6.2e-94 349.4 625 37.1
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 3.6e-86 323.6 566 36.7
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 1.9e-82 311.2 534 37.5
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 4.6e-81 306.6 297 53.9
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.5e-79 301.6 488 39.8
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.9e-71 274.6 310 46.8
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 7.3e-71 272.7 305 49.8
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 5.1e-64 250.0 358 42.7
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 2.1e-62 244.6 739 27.7
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 3.2e-58 230.7 763 29.1
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 1.6e-57 228.4 678 29.2
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.2e-50 203.8 383 36.6
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 3.7e-46 190.7 679 25.5
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 8.8e-32 142.9 458 29.3
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.2e-26 123.2 154 42.9
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 3.9e-24 117.5 158 44.3
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.7e-24 116.7 133 46.6
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 2.0e-23 115.2 138 50.0
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 6.3e-22 110.2 137 44.5
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.5e-18 98.2 128 45.3
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 7.2e-18 96.7 227 33.5
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.7e-17 94.0 127 43.3
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.1e-17 93.6 129 42.6
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.1e-17 93.6 128 43.8
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-16 92.4 129 41.9
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.3e-15 87.8 138 39.9
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 1.7e-14 85.5 140 35.7
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 1.7e-14 85.5 65 58.5
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 9.1e-13 79.7 132 40.9
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 5.9e-12 77.0 144 35.4
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.8e-11 74.3 77 49.4
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.9e-10 72.0 77 48.1
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 9.4e-10 69.7 77 49.4
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.2e-09 69.3 77 48.1
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.7e-09 68.2 77 46.8
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 2.7e-09 68.2 78 46.2
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-08 65.9 77 45.5
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.7e-06 57.8 76 43.4


User provided reference genes

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