Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 4.1e-116 421.4 210 100.0
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 1.0e-103 380.2 202 93.1
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.8e-103 379.4 202 92.1
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.8e-103 379.4 202 92.1
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 5.2e-103 377.9 202 92.1
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 1.6e-99 366.3 210 85.7
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 6.3e-93 344.4 201 82.1
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 3.4e-86 322.0 211 75.4
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.6e-83 313.2 201 76.6
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 6.0e-83 311.2 210 74.3
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 4.7e-80 301.6 202 73.8
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 4.4e-70 268.5 210 63.3
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 6.0e-67 258.1 180 65.6
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.7e-66 256.5 180 65.0
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.7e-66 256.5 180 65.0
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 3.9e-66 255.4 186 65.1
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 5.6e-65 251.5 204 59.3
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 1.2e-64 250.4 182 64.8
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 3.6e-64 248.8 204 60.3
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 4.7e-64 248.4 207 58.5
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.4e-63 246.9 195 60.5
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 2.4e-63 246.1 191 60.7
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 2.4e-63 246.1 211 58.8
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 3.1e-63 245.7 200 60.5
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 3.1e-63 245.7 206 58.7
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 4.0e-63 245.4 192 60.9
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 5.2e-63 245.0 194 61.3
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 6.8e-63 244.6 205 58.0
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 6.8e-63 244.6 193 60.1
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 2.6e-62 242.7 177 65.5
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 2.6e-62 242.7 194 60.8
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 2.6e-62 242.7 194 60.8
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 2.6e-62 242.7 187 63.1
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 2.6e-62 242.7 212 59.0
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 3.4e-62 242.3 207 56.0
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 4.4e-62 241.9 166 67.5
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 4.4e-62 241.9 201 58.7
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 5.8e-62 241.5 196 61.7
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 1.7e-61 240.0 190 60.5
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.9e-61 239.2 191 59.7
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.9e-61 239.2 191 59.7
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 2.9e-61 239.2 194 59.8
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 3.8e-61 238.8 174 63.8
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 3.8e-61 238.8 197 60.9
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 6.4e-61 238.0 195 60.5
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 6.4e-61 238.0 204 59.8
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 8.4e-61 237.7 156 75.0
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 8.4e-61 237.7 208 57.7
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 8.4e-61 237.7 188 60.1
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.1e-60 237.3 191 59.7
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 1.1e-60 237.3 176 64.2
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.1e-60 237.3 197 59.4
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 1.4e-60 236.9 200 58.0
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 1.4e-60 236.9 197 59.4
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.9e-60 236.5 191 60.2
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.4e-60 236.1 198 58.6
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 2.4e-60 236.1 197 58.4
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.2e-60 235.3 199 60.3
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 7.1e-60 234.6 203 58.1
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 7.1e-60 234.6 188 63.3
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 9.3e-60 234.2 210 56.7
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 1.2e-59 233.8 200 57.0
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 1.2e-59 233.8 171 63.2
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 1.6e-59 233.4 192 59.9
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.6e-59 233.4 188 62.8
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 3.5e-59 232.3 190 60.5
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 3.5e-59 232.3 200 57.0
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.5e-59 232.3 189 58.2
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.5e-59 232.3 189 57.1
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 4.6e-59 231.9 185 60.0
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 6.0e-59 231.5 203 56.7
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.0e-58 230.7 184 59.2
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.0e-58 230.7 194 58.2
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.3e-58 229.6 189 56.6
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 3.0e-58 229.2 193 59.6
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 3.0e-58 229.2 209 57.4
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 3.0e-58 229.2 193 58.5
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 3.9e-58 228.8 165 64.8
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 3.9e-58 228.8 180 58.3
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 5.1e-58 228.4 196 59.7
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 8.7e-58 227.6 206 54.4
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 8.7e-58 227.6 213 55.4
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 8.7e-58 227.6 184 58.7
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 8.7e-58 227.6 194 55.7
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.1e-57 227.3 167 65.3
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 1.1e-57 227.3 183 57.4
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.5e-57 226.9 191 58.6
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 1.5e-57 226.9 177 58.8
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 3.3e-57 225.7 198 55.6
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 3.3e-57 225.7 203 53.2
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 4.3e-57 225.3 203 53.7
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 5.6e-57 224.9 193 57.0
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 5.6e-57 224.9 203 53.7
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 7.3e-57 224.6 191 59.2
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 7.3e-57 224.6 199 54.3
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 7.3e-57 224.6 201 55.2
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 9.6e-57 224.2 196 57.1
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 1.6e-56 223.4 200 56.5
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 1.6e-56 223.4 193 56.0
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.6e-56 223.4 189 57.7
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 1.6e-56 223.4 198 55.1
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 6.2e-56 221.5 199 56.8
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 8.1e-56 221.1 184 59.8
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 8.1e-56 221.1 203 55.2
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 6.9e-55 218.0 197 54.3
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 9.0e-55 217.6 202 52.0
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 2.0e-54 216.5 194 54.1
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 2.6e-54 216.1 202 52.5
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 1.3e-53 213.8 197 53.3
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.8e-53 212.2 209 52.6
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.8e-53 212.2 209 52.6
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.4e-52 210.3 190 57.9
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 3.2e-52 209.1 193 53.4
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 5.4e-52 208.4 208 51.4
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 2.7e-51 206.1 145 65.5
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 3.3e-49 199.1 200 48.5
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 9.0e-47 191.0 185 50.8
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.5e-46 190.3 285 40.7
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 1.5e-46 190.3 152 60.5
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 2.4e-44 183.0 136 67.6
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 3.2e-44 182.6 164 51.2
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 3.5e-43 179.1 128 62.5
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 1.1e-41 174.1 153 56.2
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 7.4e-41 171.4 189 46.0
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 6.5e-37 158.3 133 59.4
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.1e-36 157.5 168 44.0
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 5.1e-34 148.7 169 44.4
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.1e-31 141.0 192 42.7
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.8e-31 140.2 194 41.2
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 2.6e-30 136.3 168 47.6
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.8e-29 132.5 158 43.0
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 7.9e-27 124.8 196 33.2
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 7.4e-25 118.2 166 41.0
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 2.0e-22 110.2 78 60.3
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.8e-15 87.0 69 52.2
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.5e-14 84.0 168 31.5
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 6.1e-11 72.0 62 51.6
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.5e-09 67.4 67 56.7
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 4.1e-07 59.3 61 55.7
Thecc.05G250300 Theobroma cacao HOM05D006013 ORTHO05D007383 7.7e-06 55.1 167 25.7


User provided reference genes

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