Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27372 Brassica carinata HOM05D005010 ORTHO05D006065 4.1e-87 324.7 165 100.0
A08p15390 Brassica napus HOM05D005010 ORTHO05D006065 7.5e-49 197.6 132 78.0
BraA08t33517Z Brassica rapa HOM05D005010 ORTHO05D006065 7.5e-49 197.6 132 78.0
BcaB03g11707 Brassica carinata HOM05D005010 ORTHO05D006065 1.6e-46 189.9 131 77.1
BcaC01g00726 Brassica carinata HOM05D005010 ORTHO05D006065 1.6e-46 189.9 131 77.1
BcaC01g00732 Brassica carinata HOM05D005010 ORTHO05D006065 4.6e-46 188.3 132 73.5
BolC3t20645H Brassica oleracea HOM05D005010 ORTHO05D006065 4.6e-46 188.3 132 73.5
C03p83660 Brassica napus HOM05D005010 ORTHO05D006065 7.8e-46 187.6 132 73.5
Sp7g19030 Schrenkiella parvula HOM05D005010 ORTHO05D006065 1.4e-42 176.8 132 69.7
Thhalv10025283m.g Eutrema salsugineum HOM05D005010 ORTHO05D006065 2.4e-39 166.0 132 65.9
AL7G33190 Arabidopsis lyrata HOM05D005010 ORTHO05D006065 1.0e-37 160.6 130 66.9
AT4G20960 Arabidopsis thaliana HOM05D005010 ORTHO05D006065 2.5e-36 156.0 130 63.8
Carub.0007s2048 Capsella rubella HOM05D005010 ORTHO05D006065 6.2e-35 151.4 129 64.3
CARHR227510 Cardamine hirsuta HOM05D005010 ORTHO05D006065 8.1e-35 151.0 129 63.6
Aa31LG6G3020 Aethionema arabicum HOM05D005010 ORTHO05D006065 3.4e-33 145.6 135 60.7
THA.LOC104812937 Tarenaya hassleriana HOM05D005010 ORTHO05D006065 8.4e-32 141.0 132 61.4
Sabra14G0060200 Salix brachista HOM05D005010 ORTHO05D006065 5.8e-25 118.2 102 57.8
Potri.002G158800 Populus trichocarpa HOM05D005010 ORTHO05D006065 7.6e-25 117.9 125 50.4
Prupe.2G112100 Prunus persica HOM05D005010 ORTHO05D006065 2.9e-24 115.9 132 53.0
Duzib268G0644 Durio zibethinus HOM05D005010 ORTHO05D006065 4.9e-24 115.2 129 51.2
Cfa003937 Carpinus fangiana HOM05D005010 ORTHO05D006065 1.1e-23 114.0 135 52.6
Haze_15489 Corylus avellana HOM05D005010 ORTHO05D006065 1.4e-23 113.6 135 49.6
CiPaw.01G060000 Carya illinoinensis HOM05D005010 ORTHO05D006065 3.2e-23 112.5 57 84.2
ATR0680G350 Amborella trichopoda HOM05D005010 ORTHO05D006065 4.2e-23 112.1 59 81.4
Actinidia10021 Actinidia chinensis HOM05D005010 ORTHO05D006065 5.4e-23 111.7 91 62.6
CSS0001208 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 1.2e-22 110.5 91 60.4
CSS0029232 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 1.2e-22 110.5 91 60.4
Dinv32470 Davidia involucrata HOM05D005010 ORTHO05D006065 1.2e-22 110.5 93 61.3
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 1.2e-22 110.5 55 87.3
Thecc.01G360400 Theobroma cacao HOM05D005010 ORTHO05D006065 1.2e-22 110.5 55 87.3
MSTRG.17259 Avicennia marina HOM05D005010 ORTHO05D006065 1.6e-22 110.2 118 53.4
Aqoxy7G00336 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 2.1e-22 109.8 65 73.8
ECA234G3587 Erigeron canadensis HOM05D005010 ORTHO05D006065 2.7e-22 109.4 57 82.5
Gorai.004G042100 Gossypium raimondii HOM05D005010 ORTHO05D006065 2.7e-22 109.4 135 48.1
SalBow6G7245 Salvia bowleyana HOM05D005010 ORTHO05D006065 3.5e-22 109.0 81 61.7
Manes.05G035400 Manihot esculenta HOM05D005010 ORTHO05D006065 4.6e-22 108.6 55 83.6
FAN19G0035 Fragaria x ananassa HOM05D005010 ORTHO05D006065 6.0e-22 108.2 123 52.8
Rhsim07G0016300 Rhododendron simsii HOM05D005010 ORTHO05D006065 6.0e-22 108.2 56 80.4
Migut.B01743 Erythranthe guttata HOM05D005010 ORTHO05D006065 7.9e-22 107.8 96 58.3
Eucgr.D02284 Eucalyptus grandis HOM05D005010 ORTHO05D006065 7.9e-22 107.8 87 59.8
FvH4_7g08470 Fragaria vesca HOM05D005010 ORTHO05D006065 7.9e-22 107.8 58 82.8
SalBow1G2229 Salvia bowleyana HOM05D005010 ORTHO05D006065 7.9e-22 107.8 69 71.0
MBI18_g42176_MAGBIO Magnolia biondii HOM05D005010 ORTHO05D006065 1.0e-21 107.5 61 73.8
Nn2g11699 Nelumbo nucifera HOM05D005010 ORTHO05D006065 1.0e-21 107.5 56 82.1
TAR629G2224 Trochodendron aralioides HOM05D005010 ORTHO05D006065 1.0e-21 107.5 61 75.4
Ciclev10020258m.g Citrus clementina HOM05D005010 ORTHO05D006065 1.3e-21 107.1 58 81.0
Glyma.07G071800 Glycine max HOM05D005010 ORTHO05D006065 1.3e-21 107.1 58 79.3
QL08p049016 Quercus lobata HOM05D005010 ORTHO05D006065 1.3e-21 107.1 58 79.3
Actinidia20915 Actinidia chinensis HOM05D005010 ORTHO05D006065 1.8e-21 106.7 91 60.4
CANSAT21G0157 Cannabis sativa HOM05D005010 ORTHO05D006065 1.8e-21 106.7 57 77.2
FvH4_1g22161 Fragaria vesca HOM05D005010 ORTHO05D006065 1.8e-21 106.7 124 54.8
FAN26G0391 Fragaria x ananassa HOM05D005010 ORTHO05D006065 2.3e-21 106.3 119 50.4
Duzib138G0257 Durio zibethinus HOM05D005010 ORTHO05D006065 3.0e-21 105.9 133 47.4
FAN01G2345 Fragaria x ananassa HOM05D005010 ORTHO05D006065 3.0e-21 105.9 137 47.4
HanXRQChr16g0522801 Helianthus annuus HOM05D005010 ORTHO05D006065 3.0e-21 105.9 129 46.5
Lsat_1_v5_gn_4_36200 Lactuca sativa HOM05D005010 ORTHO05D006065 3.0e-21 105.9 57 78.9
Rhsim11G0072000 Rhododendron simsii HOM05D005010 ORTHO05D006065 3.0e-21 105.9 55 80.0
Cpa.g.c27491.2 Carica papaya HOM05D005010 ORTHO05D006065 3.9e-21 105.5 55 83.6
Gohir.A08G032600 Gossypium hirsutum HOM05D005010 ORTHO05D006065 3.9e-21 105.5 135 46.7
Lj9C582G27 Lonicera japonica HOM05D005010 ORTHO05D006065 3.9e-21 105.5 65 70.8
MD02G1227800 Malus domestica HOM05D005010 ORTHO05D006065 6.7e-21 104.8 92 60.9
RcHm_v2.0_Chr1g0343231 Rosa chinensis HOM05D005010 ORTHO05D006065 6.7e-21 104.8 131 48.1
PGSC0003DMG400000164 Solanum tuberosum HOM05D005010 ORTHO05D006065 6.7e-21 104.8 65 70.8
Zm00001eb001180 Zea mays HOM05D005010 ORTHO05D006065 6.7e-21 104.8 61 77.0
TAR629G1525 Trochodendron aralioides HOM05D005010 ORTHO05D006065 8.7e-21 104.4 61 75.4
HPP92_014015 Vanilla planifolia HOM05D005010 ORTHO05D006065 8.7e-21 104.4 55 81.8
FAN06G0276 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.1e-20 104.0 123 50.4
Glyma.03G010700 Glycine max HOM05D005010 ORTHO05D006065 1.1e-20 104.0 133 48.9
RcHm_v2.0_Chr2g0122991 Rosa chinensis HOM05D005010 ORTHO05D006065 1.1e-20 104.0 132 47.7
EL10Ac1g00427 Beta vulgaris HOM05D005010 ORTHO05D006065 1.5e-20 103.6 125 46.4
AUR62004345 Chenopodium quinoa HOM05D005010 ORTHO05D006065 1.9e-20 103.2 56 78.6
COL.COLO4_12702 Corchorus olitorius HOM05D005010 ORTHO05D006065 1.9e-20 103.2 55 76.4
Peaxi162Scf00020g00235 Petunia axillaris HOM05D005010 ORTHO05D006065 1.9e-20 103.2 57 78.9
CAN.G78.54 Capsicum annuum HOM05D005010 ORTHO05D006065 2.5e-20 102.8 69 63.8
AUR62022551 Chenopodium quinoa HOM05D005010 ORTHO05D006065 2.5e-20 102.8 57 75.4
Solyc01g094500.3 Solanum lycopersicum HOM05D005010 ORTHO05D006065 2.5e-20 102.8 65 69.2
Sopen01g038310 Solanum pennellii HOM05D005010 ORTHO05D006065 2.5e-20 102.8 65 69.2
Lj4g0008215 Lotus japonicus HOM05D005010 ORTHO05D006065 4.3e-20 102.1 55 78.2
Sc23g0002970 Simmondsia chinensis HOM05D005010 ORTHO05D006065 4.3e-20 102.1 58 74.1
FAN03G3376 Fragaria x ananassa HOM05D005010 ORTHO05D006065 5.6e-20 101.7 131 48.9
Lalb_Chr17g0339751 Lupinus albus HOM05D005010 ORTHO05D006065 5.6e-20 101.7 127 46.5
Oeu034880.2 Olea europaea HOM05D005010 ORTHO05D006065 5.6e-20 101.7 57 75.4
Oeu058611.3 Olea europaea HOM05D005010 ORTHO05D006065 5.6e-20 101.7 57 77.2
Atru.chr5.463 Acer truncatum HOM05D005010 ORTHO05D006065 7.4e-20 101.3 56 76.8
FAN03G2591 Fragaria x ananassa HOM05D005010 ORTHO05D006065 7.4e-20 101.3 130 47.7
PSO782G1000 Papaver somniferum HOM05D005010 ORTHO05D006065 9.6e-20 100.9 57 75.4
PGR031G1307 Punica granatum HOM05D005010 ORTHO05D006065 1.3e-19 100.5 146 43.8
arahy.Tifrunner.gnm1.ann1.99Z3M1 Arachis hypogaea HOM05D005010 ORTHO05D006065 1.6e-19 100.1 136 45.6
Os03g0117200 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 1.6e-19 100.1 61 73.8
unitig_749.g13796 Utricularia gibba HOM05D005010 ORTHO05D006065 1.6e-19 100.1 120 43.3
arahy.Tifrunner.gnm1.ann1.L7E1K8 Arachis hypogaea HOM05D005010 ORTHO05D006065 2.1e-19 99.8 135 45.2
Hund16928 Selenicereus undatus HOM05D005010 ORTHO05D006065 2.1e-19 99.8 111 50.5
SGA_v2.0_scaffold4G02331 Striga asiatica HOM05D005010 ORTHO05D006065 2.8e-19 99.4 97 50.5
GSVIVG01026897001 Vitis vinifera HOM05D005010 ORTHO05D006065 2.8e-19 99.4 50 86.0
Ah.05g180680 Amaranthus hybridus HOM05D005010 ORTHO05D006065 3.6e-19 99.0 111 48.6
Cc02_g37880 Coffea canephora HOM05D005010 ORTHO05D006065 3.6e-19 99.0 88 59.1
DCAR_006924 Daucus carota HOM05D005010 ORTHO05D006065 3.6e-19 99.0 57 73.7
Psat4g028280 Pisum sativum HOM05D005010 ORTHO05D006065 3.6e-19 99.0 68 66.2
SEGI_16261 Sequoiadendron giganteum HOM05D005010 ORTHO05D006065 3.6e-19 99.0 85 55.3
FAN03G3310 Fragaria x ananassa HOM05D005010 ORTHO05D006065 4.8e-19 98.6 130 46.9
BraA03t14331Z Brassica rapa HOM05D005010 ORTHO05D006065 8.1e-19 97.8 50 82.0
FAN28G0697 Fragaria x ananassa HOM05D005010 ORTHO05D006065 8.1e-19 97.8 123 48.8
Nitab4.5_0007225g0010 Nicotiana tabacum HOM05D005010 ORTHO05D006065 8.1e-19 97.8 55 74.5
arahy.Tifrunner.gnm1.ann1.MH5UBF Arachis hypogaea HOM05D005010 ORTHO05D006065 1.1e-18 97.4 58 72.4
arahy.Tifrunner.gnm1.ann1.23H0YW Arachis hypogaea HOM05D005010 ORTHO05D006065 1.4e-18 97.1 62 66.1
TWI14G0418 Tripterygium wilfordii HOM05D005010 ORTHO05D006065 1.4e-18 97.1 132 44.7
TPR.G14634 Trifolium pratense HOM05D005010 ORTHO05D006065 1.8e-18 96.7 66 65.2
Os04g0177400 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 2.4e-18 96.3 82 57.3
Phvul.010G097500 Phaseolus vulgaris HOM05D005010 ORTHO05D006065 2.4e-18 96.3 57 71.9
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 4.0e-18 95.5 54 74.1
VMungo0331G1782 Vigna mungo HOM05D005010 ORTHO05D006065 4.0e-18 95.5 57 73.7
vmacro13278 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 5.3e-18 95.1 51 76.5
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 6.9e-18 94.7 60 68.3
BcaNung05416 Brassica carinata HOM05D005010 ORTHO05D006065 1.2e-17 94.0 50 82.0
BolC7t45602H Brassica oleracea HOM05D005010 ORTHO05D006065 1.2e-17 94.0 50 82.0
ClCG06G003790 Citrullus lanatus HOM05D005010 ORTHO05D006065 1.2e-17 94.0 57 71.9
CsaV3_6G000480 Cucumis sativus L. HOM05D005010 ORTHO05D006065 1.2e-17 94.0 57 71.9
Nitab4.5_0007690g0020 Nicotiana tabacum HOM05D005010 ORTHO05D006065 1.2e-17 94.0 55 74.5
Eucgr.D00187 Eucalyptus grandis HOM05D005010 ORTHO05D006065 1.5e-17 93.6 50 82.0
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 2.6e-17 92.8 56 69.6
Medtr4g119220 Medicago truncatula HOM05D005010 ORTHO05D006065 2.6e-17 92.8 57 68.4
C07p51010 Brassica napus HOM05D005010 ORTHO05D006065 5.8e-17 91.7 50 80.0
Sed0013033 Sechium edule HOM05D005010 ORTHO05D006065 5.8e-17 91.7 57 71.9
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 1.3e-16 90.5 55 69.1
MELO3C021216.2 Cucumis melo HOM05D005010 ORTHO05D006065 4.9e-16 88.6 60 68.3
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 1.9e-15 86.7 128 43.0
Ciclev10013015m.g Citrus clementina HOM05D005010 ORTHO05D006065 3.2e-15 85.9 46 78.3
SMO119G0342 Selaginella moellendorffii HOM05D005010 ORTHO05D006065 3.2e-15 85.9 56 66.1
HPP92_013926 Vanilla planifolia HOM05D005010 ORTHO05D006065 3.5e-14 82.4 52 69.2
A03p52560 Brassica napus HOM05D005010 ORTHO05D006065 7.9e-14 81.3 44 77.3
HPP92_014013 Vanilla planifolia HOM05D005010 ORTHO05D006065 7.9e-14 81.3 52 67.3
PRCOL_00002917 Prasinoderma coloniale HOM05D005010 ORTHO05D006065 5.1e-13 78.6 56 62.5
Potri.014G083000 Populus trichocarpa HOM05D005010 ORTHO05D006065 6.7e-13 78.2 57 64.9
vmacro14577 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 6.7e-13 78.2 41 75.6
Lalb_Chr04g0256911 Lupinus albus HOM05D005010 ORTHO05D006065 1.5e-12 77.0 57 56.1
MCO15G184 Micromonas commoda HOM05D005010 ORTHO05D006065 2.1e-11 73.2 56 62.5
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 9.0e-10 67.8 69 49.3
Aqoxy3G02565 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 8.4e-08 61.2 31 87.1
Ah.09g225570 Amaranthus hybridus HOM05D005010 ORTHO05D006065 1.2e-06 57.4 38 68.4
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 3.5e-06 55.8 56 50.0


User provided reference genes

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