Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27362 Brassica carinata HOM05D006858 ORTHO05D008767 5.3e-90 335.5 380 100.0
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 4.7e-78 295.8 153 96.7
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 4.7e-78 295.8 153 96.7
Sp7g02300 Schrenkiella parvula HOM05D006858 ORTHO05D008767 1.1e-71 274.6 152 89.5
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 5.5e-71 272.3 151 88.7
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 8.0e-70 268.5 153 89.5
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 8.0e-70 268.5 153 89.5
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 3.7e-67 259.6 148 86.5
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 4.1e-66 256.1 151 82.8
THA.LOC104804370 Tarenaya hassleriana HOM05D006858 ORTHO05D008767 6.1e-62 242.3 151 78.1
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 7.0e-58 228.8 148 74.3
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 1.0e-56 224.9 148 72.3
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 5.0e-56 222.6 149 70.5
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 1.5e-55 221.1 148 72.3
Atru.chr5.2775 Acer truncatum HOM05D006858 ORTHO05D008767 2.5e-55 220.3 148 71.6
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 1.6e-54 217.6 148 69.6
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 8.0e-54 215.3 148 68.9
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 3.1e-53 213.4 148 69.6
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 1.5e-52 211.1 148 68.2
Phvul.003G012700 Phaseolus vulgaris HOM05D006858 ORTHO05D008767 2.0e-52 210.7 148 66.9
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 3.4e-52 209.9 149 66.4
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 4.4e-52 209.5 148 69.6
Ciclev10028118m.g Citrus clementina HOM05D006858 ORTHO05D008767 5.8e-52 209.1 149 66.4
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 5.8e-52 209.1 149 65.8
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 9.8e-52 208.4 149 67.1
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 2.2e-51 207.2 148 67.6
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 2.9e-51 206.8 135 73.3
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 2.9e-51 206.8 148 65.5
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 4.9e-51 206.1 148 68.2
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 6.4e-51 205.7 148 66.2
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 6.4e-51 205.7 148 65.5
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 8.3e-51 205.3 148 66.9
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 8.3e-51 205.3 148 66.9
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 8.3e-51 205.3 148 65.5
TAR628G1172 Trochodendron aralioides HOM05D006858 ORTHO05D008767 8.3e-51 205.3 149 66.4
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 1.1e-50 204.9 148 64.9
VMungo1215G0504 Vigna mungo HOM05D006858 ORTHO05D008767 1.1e-50 204.9 148 65.5
HanXRQChr10g0303231 Helianthus annuus HOM05D006858 ORTHO05D008767 1.9e-50 204.1 148 65.5
Eucgr.I01171 Eucalyptus grandis HOM05D006858 ORTHO05D008767 3.2e-50 203.4 149 63.1
MD10G1090200 Malus domestica HOM05D006858 ORTHO05D008767 3.2e-50 203.4 148 65.5
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 3.2e-50 203.4 147 66.7
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 5.4e-50 202.6 148 66.2
Glyma.20G010100 Glycine max HOM05D006858 ORTHO05D008767 9.2e-50 201.8 148 65.5
Lsat_1_v5_gn_5_113361 Lactuca sativa HOM05D006858 ORTHO05D008767 1.2e-49 201.4 148 64.9
Ca_12460_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 2.1e-49 200.7 148 65.5
Ca_29767_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 2.1e-49 200.7 148 65.5
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 2.1e-49 200.7 148 64.9
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 2.1e-49 200.7 148 64.9
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 2.1e-49 200.7 148 64.9
Sc08g0000040 Simmondsia chinensis HOM05D006858 ORTHO05D008767 2.1e-49 200.7 148 63.5
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 2.7e-49 200.3 148 66.2
Psat6g096520 Pisum sativum HOM05D006858 ORTHO05D008767 6.0e-49 199.1 148 64.2
GSVIVG01031787001 Vitis vinifera HOM05D006858 ORTHO05D008767 6.0e-49 199.1 136 69.9
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 7.8e-49 198.7 148 60.8
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.0e-48 198.4 148 64.2
vmacro13394 Vaccinium macrocarpon HOM05D006858 ORTHO05D008767 1.0e-48 198.4 148 63.5
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 1.3e-48 198.0 148 62.8
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 3.0e-48 196.8 149 63.8
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 5.1e-48 196.1 148 63.5
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 1.1e-47 194.9 148 62.2
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 1.1e-47 194.9 146 65.8
Dinv23584 Davidia involucrata HOM05D006858 ORTHO05D008767 5.6e-47 192.6 148 64.9
AUR62016628 Chenopodium quinoa HOM05D006858 ORTHO05D008767 9.5e-47 191.8 147 61.9
Ah.01g020130 Amaranthus hybridus HOM05D006858 ORTHO05D008767 2.1e-46 190.7 149 58.4
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 2.1e-46 190.7 147 61.2
Migut.N01200 Erythranthe guttata HOM05D006858 ORTHO05D008767 3.6e-46 189.9 149 56.4
EL10Ac9g21827 Beta vulgaris HOM05D006858 ORTHO05D008767 1.4e-45 188.0 147 59.9
Carub.0007s3617 Capsella rubella HOM05D006858 ORTHO05D008767 1.8e-45 187.6 151 65.6
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 1.8e-45 187.6 149 61.1
MSTRG.27720 Avicennia marina HOM05D006858 ORTHO05D008767 4.0e-45 186.4 149 56.4
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 4.0e-45 186.4 148 58.1
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 1.2e-44 184.9 135 63.0
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 9.9e-44 181.8 147 57.1
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 3.7e-43 179.9 148 55.4
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 3.7e-43 179.9 148 55.4
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 6.4e-43 179.1 149 57.0
Nitab4.5_0004334g0100 Nicotiana tabacum HOM05D006858 ORTHO05D008767 1.1e-42 178.3 148 55.4
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 2.4e-42 177.2 148 55.4
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 4.1e-42 176.4 148 56.8
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 5.1e-40 169.5 146 54.8
SGA_v2.0_scaffold13G06572 Striga asiatica HOM05D006858 ORTHO05D008767 1.1e-39 168.3 149 53.7
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 3.3e-39 166.8 146 54.1
Os06g0152500 Oryza sativa ssp. japonica HOM05D006858 ORTHO05D008767 4.3e-39 166.4 146 51.4
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 1.1e-37 161.8 149 55.7
RcHm_v2.0_Chr7g0233241 Rosa chinensis HOM05D006858 ORTHO05D008767 6.8e-37 159.1 148 57.4
Zm00001eb376700 Zea mays HOM05D006858 ORTHO05D008767 8.9e-37 158.7 148 51.4
CDE09G0572 Ceratophyllum demersum HOM05D006858 ORTHO05D008767 1.5e-36 157.9 143 55.2
PGSC0003DMG402025785 Solanum tuberosum HOM05D006858 ORTHO05D008767 2.0e-36 157.5 149 49.7
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 8.4e-35 152.1 148 52.7
TAR633G1647 Trochodendron aralioides HOM05D006858 ORTHO05D008767 1.0e-32 145.2 149 51.7
Prupe.8G118500 Prunus persica HOM05D006858 ORTHO05D008767 2.4e-29 134.0 127 57.5
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 4.2e-26 123.2 122 53.3
Cpa.g.sc62.38 Carica papaya HOM05D006858 ORTHO05D008767 9.3e-26 122.1 136 48.5
Zm00001eb348200 Zea mays HOM05D006858 ORTHO05D008767 1.1e-21 108.6 148 39.9
TPR.G40260 Trifolium pratense HOM05D006858 ORTHO05D008767 9.0e-21 105.5 115 50.4
ATR0043G025 Amborella trichopoda HOM05D006858 ORTHO05D008767 1.9e-18 97.8 82 56.1
AL7G50600 Arabidopsis lyrata HOM05D006858 ORTHO05D008767 1.6e-17 94.7 48 87.5
HPP92_006001 Vanilla planifolia HOM05D006858 ORTHO05D008767 2.1e-14 84.3 68 54.4
ATR1120G070 Amborella trichopoda HOM05D006858 ORTHO05D008767 4.0e-13 80.1 53 67.9
arahy.Tifrunner.gnm1.ann1.B0BY4Q Arachis hypogaea HOM05D000891 ORTHO05D000761 3.0e-08 63.9 94 31.9
arahy.Tifrunner.gnm1.ann1.LDS0KH Arachis hypogaea HOM05D000891 ORTHO05D000761 3.0e-08 63.9 94 31.9
CARHR200180 Cardamine hirsuta HOM05D000001 ORTHO05D010470 2.5e-07 60.8 129 29.5
TPR.G6774 Trifolium pratense HOM05D006858 ORTHO05D008767 3.3e-07 60.5 65 52.3
CARHR048090 Cardamine hirsuta HOM05D000162 ORTHO05D003288 7.4e-07 59.3 77 40.3
CARHR262550 Cardamine hirsuta HOM05D006858 ORTHO05D008767 9.6e-07 58.9 30 90.0
AT5G13270 Arabidopsis thaliana HOM05D000001 ORTHO05D010470 1.3e-06 58.5 129 29.5
SGA_v2.0_scaffold20G09181 Striga asiatica HOM05D008470 ORTHO05D010644 1.3e-06 58.5 94 36.2
Aa31LG3G14390 Aethionema arabicum HOM05D000001 ORTHO05D010470 2.8e-06 57.4 129 27.9
AL6G23890 Arabidopsis lyrata HOM05D000001 ORTHO05D010470 2.8e-06 57.4 129 29.5
Thhalv10012768m.g Eutrema salsugineum HOM05D000001 ORTHO05D010470 3.7e-06 57.0 129 29.5
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 4.8e-06 56.6 128 31.2
Gohir.D06G192800 Gossypium hirsutum HOM05D000891 ORTHO05D000761 4.8e-06 56.6 140 28.6
Carub.0006s1144 Capsella rubella HOM05D000001 ORTHO05D010470 6.2e-06 56.2 129 27.9
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 8.2e-06 55.8 65 35.4
Ah.04g149830 Amaranthus hybridus HOM05D000001 ORTHO05D011365 8.2e-06 55.8 137 27.7
BcaC04g19128 Brassica carinata HOM05D000001 ORTHO05D000003 8.2e-06 55.8 129 28.7


User provided reference genes

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