Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27335 Brassica carinata HOM05D003519 ORTHO05D004443 5.7e-55 217.2 103 100.0
C04p45870 Brassica napus HOM05D003519 ORTHO05D004443 3.1e-48 194.9 101 90.1
BolC4t26170H Brassica oleracea HOM05D003519 ORTHO05D004443 3.1e-48 194.9 101 90.1
BcaB06g27311 Brassica carinata HOM05D003519 ORTHO05D004443 2.0e-47 192.2 101 89.1
A04p12220 Brassica napus HOM05D003519 ORTHO05D004443 5.8e-47 190.7 101 88.1
Sp7g02520 Schrenkiella parvula HOM05D003519 ORTHO05D004443 6.4e-38 160.6 89 82.0
A04p12200 Brassica napus HOM05D003519 ORTHO05D004443 9.2e-37 156.8 91 78.0
BcaB06g27309 Brassica carinata HOM05D003519 ORTHO05D004443 1.2e-36 156.4 91 78.0
BcaB06g27331 Brassica carinata HOM05D003519 ORTHO05D004443 1.2e-36 156.4 91 76.9
C04p45850 Brassica napus HOM05D003519 ORTHO05D004443 1.2e-36 156.4 91 78.0
BolC4t26171H Brassica oleracea HOM05D003519 ORTHO05D004443 1.2e-36 156.4 91 78.0
Sp7g02470 Schrenkiella parvula HOM05D003519 ORTHO05D004443 1.6e-36 156.0 98 77.6
BraA04t16884Z Brassica rapa HOM05D003519 ORTHO05D004443 3.0e-35 151.8 91 75.8
CARHR258220 Cardamine hirsuta HOM05D003519 ORTHO05D004443 2.5e-34 148.7 99 70.7
AT5G39460 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 3.3e-34 148.3 99 70.7
BcaB06g27312 Brassica carinata HOM05D003519 ORTHO05D004443 5.6e-34 147.5 92 73.9
C04p45890 Brassica napus HOM05D003519 ORTHO05D004443 5.6e-34 147.5 92 73.9
CARHR262890 Cardamine hirsuta HOM05D003519 ORTHO05D004443 2.1e-33 145.6 100 69.0
AL7G50820 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 4.7e-33 144.4 99 68.7
A04p12230 Brassica napus HOM05D003519 ORTHO05D004443 3.1e-32 141.7 92 70.7
AT5G39480 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 6.0e-28 127.5 98 64.3
CARHR262880 Cardamine hirsuta HOM05D003519 ORTHO05D004443 3.0e-27 125.2 83 72.3
CARHR262850 Cardamine hirsuta HOM05D003519 ORTHO05D004443 8.6e-27 123.6 89 67.4
Aa31LG9G16540 Aethionema arabicum HOM05D003519 ORTHO05D004443 1.6e-25 119.4 95 63.2
AT5G39490 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 2.8e-25 118.6 87 63.2
PSO832G1142 Papaver somniferum HOM05D003519 ORTHO05D004443 2.8e-25 118.6 86 62.8
PSO063G6904 Papaver somniferum HOM05D003519 ORTHO05D004443 3.6e-25 118.2 86 65.1
PSO832G0337 Papaver somniferum HOM05D003519 ORTHO05D004443 3.6e-25 118.2 86 65.1
Thhalv10027700m.g Eutrema salsugineum HOM05D003519 ORTHO05D004443 2.4e-24 115.5 88 62.5
Sp7g02530 Schrenkiella parvula HOM05D003519 ORTHO05D004443 4.0e-24 114.8 85 64.7
Sp7g02490 Schrenkiella parvula HOM05D003519 ORTHO05D004443 5.2e-24 114.4 64 81.2
CANSAT80G2376 Cannabis sativa HOM05D003519 ORTHO05D004443 8.9e-24 113.6 96 58.3
ClCG04G002210 Citrullus lanatus HOM05D003519 ORTHO05D004443 8.9e-24 113.6 83 61.4
Sed0005441 Sechium edule HOM05D003519 ORTHO05D004443 1.2e-23 113.2 84 60.7
TAR229G0003 Trochodendron aralioides HOM05D003519 ORTHO05D004443 1.2e-23 113.2 85 60.0
TAR381G0828 Trochodendron aralioides HOM05D003519 ORTHO05D004443 1.2e-23 113.2 85 60.0
CAN.G475.7 Capsicum annuum HOM05D003519 ORTHO05D004443 1.5e-23 112.8 89 56.2
Hma1.2p1_0310F.1_g121010 Hydrangea macrophylla HOM05D003519 ORTHO05D004443 1.5e-23 112.8 95 57.9
Glyma.05G194000 Glycine max HOM05D003519 ORTHO05D004443 2.0e-23 112.5 86 61.6
Glyma.08G002000 Glycine max HOM05D003519 ORTHO05D004443 2.0e-23 112.5 86 60.5
MELO3C008911.2 Cucumis melo HOM05D003519 ORTHO05D004443 2.6e-23 112.1 83 59.0
CsaV3_4G030500 Cucumis sativus L. HOM05D003519 ORTHO05D004443 2.6e-23 112.1 83 59.0
Prupe.4G275200 Prunus persica HOM05D003519 ORTHO05D004443 2.6e-23 112.1 87 58.6
FvH4_1g24840 Fragaria vesca HOM05D003519 ORTHO05D004443 4.4e-23 111.3 87 58.6
FAN26G0860 Fragaria x ananassa HOM05D003519 ORTHO05D004443 4.4e-23 111.3 87 58.6
FAN28G0413 Fragaria x ananassa HOM05D003519 ORTHO05D004443 4.4e-23 111.3 87 58.6
Peaxi162Scf00711g00512 Petunia axillaris HOM05D003519 ORTHO05D004443 4.4e-23 111.3 85 58.8
Actinidia06577 Actinidia chinensis HOM05D003519 ORTHO05D004443 5.8e-23 110.9 85 60.0
BcaB06g27330 Brassica carinata HOM05D003519 ORTHO05D004443 5.8e-23 110.9 84 64.3
BcaB06g27308 Brassica carinata HOM05D003519 ORTHO05D004443 7.6e-23 110.5 84 64.3
C04p45840 Brassica napus HOM05D003519 ORTHO05D004443 7.6e-23 110.5 84 64.3
FAN23G1921 Fragaria x ananassa HOM05D003519 ORTHO05D004443 7.6e-23 110.5 87 58.6
RcHm_v2.0_Chr2g0122451 Rosa chinensis HOM05D003519 ORTHO05D004443 7.6e-23 110.5 87 57.5
Cpa.g.sc37.5 Carica papaya HOM05D003519 ORTHO05D004443 9.9e-23 110.2 83 60.2
Potri.007G102000 Populus trichocarpa HOM05D003519 ORTHO05D004443 9.9e-23 110.2 83 60.2
PGSC0003DMG400009336 Solanum tuberosum HOM05D003519 ORTHO05D004443 9.9e-23 110.2 89 55.1
VMungo0251G1228 Vigna mungo HOM05D003519 ORTHO05D004443 1.3e-22 109.8 97 55.7
Medtr3g096670 Medicago truncatula HOM05D003519 ORTHO05D004443 2.2e-22 109.0 97 55.7
Potri.005G067300 Populus trichocarpa HOM05D003519 ORTHO05D004443 2.2e-22 109.0 84 59.5
Sabra05G0055300 Salix brachista HOM05D003519 ORTHO05D004443 2.2e-22 109.0 84 59.5
Atru.chr4.987 Acer truncatum HOM05D003519 ORTHO05D004443 2.9e-22 108.6 83 60.2
CARHR262900 Cardamine hirsuta HOM05D003519 ORTHO05D004443 3.8e-22 108.2 90 55.6
ECA238G3965 Erigeron canadensis HOM05D003519 ORTHO05D004443 3.8e-22 108.2 85 58.8
Lj2A614T30 Lonicera japonica HOM05D003519 ORTHO05D004443 3.8e-22 108.2 85 57.6
Manes.12G158800 Manihot esculenta HOM05D003519 ORTHO05D004443 3.8e-22 108.2 83 59.0
Nitab4.5_0003068g0020 Nicotiana tabacum HOM05D003519 ORTHO05D004443 3.8e-22 108.2 85 56.5
Sc09g0002240 Simmondsia chinensis HOM05D003519 ORTHO05D004443 3.8e-22 108.2 95 56.8
arahy.Tifrunner.gnm1.ann1.CM19QL Arachis hypogaea HOM05D003519 ORTHO05D004443 4.9e-22 107.8 85 58.8
Nitab4.5_0000227g0340 Nicotiana tabacum HOM05D003519 ORTHO05D004443 4.9e-22 107.8 85 56.5
Solyc04g076520.3 Solanum lycopersicum HOM05D003519 ORTHO05D004443 4.9e-22 107.8 89 53.9
Sopen04g030250 Solanum pennellii HOM05D003519 ORTHO05D004443 4.9e-22 107.8 89 53.9
Lsat_1_v5_gn_2_36940 Lactuca sativa HOM05D003519 ORTHO05D004443 6.4e-22 107.5 85 57.6
Phvul.002G274400 Phaseolus vulgaris HOM05D003519 ORTHO05D004443 6.4e-22 107.5 90 58.9
QL10p041283 Quercus lobata HOM05D003519 ORTHO05D004443 6.4e-22 107.5 83 57.8
GSVIVG01022332001 Vitis vinifera HOM05D003519 ORTHO05D004443 6.4e-22 107.5 83 60.2
Rhsim08G0000500 Rhododendron simsii HOM05D003519 ORTHO05D004443 8.4e-22 107.1 85 60.0
Aqoxy5G02420 Aquilegia oxysepala HOM05D003519 ORTHO05D004443 1.1e-21 106.7 86 60.5
Gohir.A05G382700 Gossypium hirsutum HOM05D003519 ORTHO05D004443 1.1e-21 106.7 83 59.0
MD15G1134900 Malus domestica HOM05D003519 ORTHO05D004443 1.1e-21 106.7 91 54.9
TAR625G0887 Trochodendron aralioides HOM05D003519 ORTHO05D004443 1.1e-21 106.7 85 58.8
Ah.04g157880 Amaranthus hybridus HOM05D003519 ORTHO05D004443 1.4e-21 106.3 83 59.0
AUR62000513 Chenopodium quinoa HOM05D003519 ORTHO05D004443 1.4e-21 106.3 83 59.0
Gorai.012G036900 Gossypium raimondii HOM05D003519 ORTHO05D004443 1.4e-21 106.3 95 54.7
Thecc.01G137200 Theobroma cacao HOM05D003519 ORTHO05D004443 1.4e-21 106.3 83 57.8
arahy.Tifrunner.gnm1.ann1.I6W5T3 Arachis hypogaea HOM05D003519 ORTHO05D004443 1.9e-21 105.9 86 57.0
arahy.Tifrunner.gnm1.ann1.JB39ED Arachis hypogaea HOM05D003519 ORTHO05D004443 1.9e-21 105.9 85 57.6
BraA04t16883Z Brassica rapa HOM05D003519 ORTHO05D004443 1.9e-21 105.9 92 59.8
DCAR_019993 Daucus carota HOM05D003519 ORTHO05D004443 1.9e-21 105.9 96 56.2
Migut.L00523 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.9e-21 105.9 86 55.8
Gohir.D04G033200 Gossypium hirsutum HOM05D003519 ORTHO05D004443 1.9e-21 105.9 95 54.7
Psat5g059880 Pisum sativum HOM05D003519 ORTHO05D004443 1.9e-21 105.9 97 54.6
AL7G50860 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 2.4e-21 105.5 88 56.8
A04p12190 Brassica napus HOM05D003519 ORTHO05D004443 2.4e-21 105.5 84 63.1
CSS0008781 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 2.4e-21 105.5 85 58.8
CSS0040411 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 2.4e-21 105.5 85 58.8
CDE06G0958 Ceratophyllum demersum HOM05D003519 ORTHO05D004443 2.4e-21 105.5 86 59.3
TPR.G33582 Trifolium pratense HOM05D003519 ORTHO05D004443 2.4e-21 105.5 97 52.6
Ca_17623_v3 Cicer arietinum L. HOM05D003519 ORTHO05D004443 3.2e-21 105.1 93 55.9
AT5G39450 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 4.2e-21 104.8 88 55.7
Ca_16980_v3 Cicer arietinum L. HOM05D003519 ORTHO05D004443 4.2e-21 104.8 97 52.6
Lalb_Chr23g0272671 Lupinus albus HOM05D003519 ORTHO05D004443 4.2e-21 104.8 84 57.1
Sabra07G0084100 Salix brachista HOM05D003519 ORTHO05D004443 4.2e-21 104.8 83 59.0
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 5.4e-21 104.4 85 56.5
Hund21800 Selenicereus undatus HOM05D003519 ORTHO05D004443 5.4e-21 104.4 83 57.8
TPR.G37338 Trifolium pratense HOM05D003519 ORTHO05D004443 5.4e-21 104.4 84 58.3
EL10Ac4g09622 Beta vulgaris HOM05D003519 ORTHO05D004443 7.1e-21 104.0 83 59.0
Duzib187G0434 Durio zibethinus HOM05D003519 ORTHO05D004443 7.1e-21 104.0 95 54.7
Ciclev10000587m.g Citrus clementina HOM05D003519 ORTHO05D004443 9.2e-21 103.6 83 59.0
Carub.0007s3648 Capsella rubella HOM05D003519 ORTHO05D004443 1.2e-20 103.2 88 54.5
Cc00_g06200 Coffea canephora HOM05D003519 ORTHO05D004443 1.6e-20 102.8 81 59.3
Glyma.06G155700 Glycine max HOM05D003519 ORTHO05D004443 1.6e-20 102.8 85 55.3
arahy.Tifrunner.gnm1.ann1.02NDWK Arachis hypogaea HOM05D003519 ORTHO05D004443 2.1e-20 102.4 86 55.8
THA.LOC104819485 Tarenaya hassleriana HOM05D003519 ORTHO05D004443 2.7e-20 102.1 93 52.7
CiPaw.03G118200 Carya illinoinensis HOM05D003519 ORTHO05D004443 3.5e-20 101.7 85 54.1
Oeu050088.1 Olea europaea HOM05D003519 ORTHO05D004443 3.5e-20 101.7 84 57.1
Oeu050089.1 Olea europaea HOM05D003519 ORTHO05D004443 3.5e-20 101.7 84 57.1
Psat7g045400 Pisum sativum HOM05D003519 ORTHO05D004443 3.5e-20 101.7 86 54.7
Migut.L00372 Erythranthe guttata HOM05D003519 ORTHO05D004443 4.6e-20 101.3 86 54.7
Migut.L00383 Erythranthe guttata HOM05D003519 ORTHO05D004443 4.6e-20 101.3 86 54.7
Migut.O00452 Erythranthe guttata HOM05D003519 ORTHO05D004443 4.6e-20 101.3 86 54.7
Medtr0095s0110 Medicago truncatula HOM05D003519 ORTHO05D004443 4.6e-20 101.3 86 53.5
Medtr8g094190 Medicago truncatula HOM05D003519 ORTHO05D004443 4.6e-20 101.3 86 53.5
TWI79G1726 Tripterygium wilfordii HOM05D003519 ORTHO05D004443 4.6e-20 101.3 82 57.3
Zm00001eb174460 Zea mays HOM05D003519 ORTHO05D004443 4.6e-20 101.3 86 57.0
HPP92_025170 Vanilla planifolia HOM05D003519 ORTHO05D004443 7.8e-20 100.5 97 53.6
VMungo1309G2829 Vigna mungo HOM05D003519 ORTHO05D004443 7.8e-20 100.5 82 57.3
Migut.L00384 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.0e-19 100.1 86 53.5
Lj4g0010335 Lotus japonicus HOM05D003519 ORTHO05D004443 1.0e-19 100.1 92 52.2
Lalb_Chr11g0068601 Lupinus albus HOM05D003519 ORTHO05D004443 1.0e-19 100.1 85 52.9
CDE08G0134 Ceratophyllum demersum HOM05D003519 ORTHO05D004443 1.3e-19 99.8 86 57.0
Os08g0105100 Oryza sativa ssp. japonica HOM05D003519 ORTHO05D004443 1.3e-19 99.8 85 54.1
Phvul.009G154700 Phaseolus vulgaris HOM05D003519 ORTHO05D004443 1.7e-19 99.4 82 57.3
Migut.L00524 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.0e-19 98.6 85 52.9
Eucgr.H05140 Eucalyptus grandis HOM05D003519 ORTHO05D004443 3.9e-19 98.2 82 56.1
Migut.L00374 Erythranthe guttata HOM05D003519 ORTHO05D004443 6.6e-19 97.4 86 51.2
SalBow5G2644 Salvia bowleyana HOM05D003519 ORTHO05D004443 6.6e-19 97.4 97 49.5
PGR102G0700 Punica granatum HOM05D003519 ORTHO05D004443 8.7e-19 97.1 93 50.5
ATR0138G021 Amborella trichopoda HOM05D003519 ORTHO05D004443 1.5e-18 96.3 81 55.6
MSTRG.15264 Avicennia marina HOM05D003519 ORTHO05D004443 4.3e-18 94.7 86 50.0
Medtr8g094150 Medicago truncatula HOM05D003519 ORTHO05D004443 4.3e-18 94.7 86 51.2
Haze_25334 Corylus avellana HOM05D003519 ORTHO05D004443 7.3e-18 94.0 83 51.8
SGA_v2.0_scaffold3G01832 Striga asiatica HOM05D003519 ORTHO05D004443 1.3e-17 93.2 100 46.0
MBI03_g39654_MAGBIO Magnolia biondii HOM05D003519 ORTHO05D004443 3.6e-17 91.7 88 51.1
Pp3c17_16670 Physcomitrium patens HOM05D003519 ORTHO05D004443 8.1e-17 90.5 85 49.4
Migut.L00390 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.1e-16 90.1 86 47.7
Migut.L00566 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.1e-16 90.1 86 47.7
SEGI_06784 Sequoiadendron giganteum HOM05D003519 ORTHO05D004443 1.1e-16 90.1 80 53.8
PSO063G4810 Papaver somniferum HOM05D003519 ORTHO05D004443 4.0e-16 88.2 86 50.0
COL.COLO4_35769 Corchorus olitorius HOM05D003519 ORTHO05D004443 5.3e-16 87.8 83 50.6
Pp3c14_13020 Physcomitrium patens HOM05D003519 ORTHO05D004443 6.9e-16 87.4 85 49.4
PSO832G2795 Papaver somniferum HOM05D003519 ORTHO05D004443 9.0e-16 87.0 86 50.0
FAN19G3005 Fragaria x ananassa HOM05D003519 ORTHO05D004443 7.6e-15 84.0 67 58.2
Nn1g08957 Nelumbo nucifera HOM05D003519 ORTHO05D004443 2.2e-14 82.4 60 58.3
HPP92_006886 Vanilla planifolia HOM05D003519 ORTHO05D004443 2.9e-14 82.0 60 58.3
Migut.L00382 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.9e-13 79.3 89 42.7
Migut.L00522 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.9e-13 79.3 89 42.7
SMO137G0098 Selaginella moellendorffii HOM05D003519 ORTHO05D004443 2.4e-13 79.0 80 50.0
CARHR262910 Cardamine hirsuta HOM05D003519 ORTHO05D004443 3.5e-12 75.1 70 51.4
Migut.L00389 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.3e-11 73.2 83 44.6
Migut.L00388 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.5e-10 69.7 84 42.9
Migut.L00386 Erythranthe guttata HOM05D003519 ORTHO05D004443 7.3e-10 67.4 93 41.9
Migut.L00373 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.8e-09 65.5 81 37.0
AL7G50850 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 3.6e-09 65.1 41 73.2
Migut.L00387 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.6e-09 65.1 93 40.9
Migut.L00385 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.4e-08 63.2 81 37.0
BcaB06g27739 Brassica carinata HOM05D003519 ORTHO05D004443 1.5e-07 59.7 37 67.6
MBI03_g31895_MAGBIO Magnolia biondii HOM05D003519 ORTHO05D004443 2.6e-07 58.9 93 38.7


User provided reference genes

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