Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 5.4e-147 524.2 252 100.0
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 3.8e-145 518.1 252 98.0
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 3.8e-145 518.1 252 98.0
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 3.8e-145 518.1 252 98.0
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 3.8e-145 518.1 252 98.0
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 1.5e-144 516.2 252 97.6
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 9.8e-133 476.9 252 88.9
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 2.2e-132 475.7 252 88.9
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 6.6e-129 464.2 252 84.9
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 2.3e-126 455.7 253 85.4
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 1.7e-124 449.5 252 84.1
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 3.7e-124 448.4 252 82.5
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 8.1e-119 430.6 252 78.6
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 5.1e-113 411.4 250 75.6
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 8.1e-103 377.5 252 68.3
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.3e-100 370.2 252 67.1
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 2.9e-100 369.0 252 67.1
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 4.9e-100 368.2 252 66.7
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 4.9e-100 368.2 252 66.7
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 8.4e-100 367.5 252 65.5
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 2.4e-99 365.9 248 66.5
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 5.4e-99 364.8 252 65.9
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 7.1e-99 364.4 252 64.3
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 1.6e-98 363.2 246 66.7
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 2.1e-98 362.8 252 64.7
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.1e-98 362.8 252 64.7
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 3.5e-98 362.1 252 65.5
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 4.6e-98 361.7 254 65.0
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 6.0e-98 361.3 252 65.5
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.0e-97 360.5 252 64.7
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 3.9e-97 358.6 249 65.1
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 5.1e-97 358.2 254 64.6
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 8.7e-97 357.5 252 65.1
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.9e-96 356.3 248 65.3
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.5e-96 355.9 252 63.9
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 3.3e-96 355.5 254 65.0
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 3.3e-96 355.5 252 63.9
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 4.3e-96 355.1 252 64.3
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 5.6e-96 354.8 252 63.5
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 5.6e-96 354.8 254 64.6
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 7.4e-96 354.4 252 64.3
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 1.3e-95 353.6 254 62.6
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 1.6e-95 353.2 252 63.5
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 2.1e-95 352.8 252 63.9
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 2.1e-95 352.8 252 63.9
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 2.8e-95 352.4 253 64.8
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 2.8e-95 352.4 254 65.0
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 8.1e-95 350.9 252 64.3
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.4e-94 349.4 252 63.5
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 2.4e-94 349.4 252 63.5
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 3.1e-94 349.0 252 63.1
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 4.0e-94 348.6 254 63.4
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 1.2e-93 347.1 252 63.1
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 1.2e-93 347.1 254 62.6
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.5e-93 346.7 253 63.6
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 2.6e-93 345.9 249 63.9
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 3.4e-93 345.5 252 62.3
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 3.4e-93 345.5 254 63.0
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.3e-92 343.6 252 62.3
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.7e-92 343.2 253 62.8
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 2.9e-92 342.4 252 61.5
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 2.9e-92 342.4 248 62.9
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 3.8e-92 342.0 252 63.5
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 1.1e-91 340.5 252 61.1
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 1.9e-91 339.7 254 61.8
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 3.2e-91 339.0 253 62.1
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 3.2e-91 339.0 248 61.7
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 4.2e-91 338.6 249 62.2
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 5.5e-91 338.2 253 61.7
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 5.5e-91 338.2 252 61.9
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 4.6e-90 335.1 252 61.5
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 4.6e-90 335.1 254 61.0
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 4.6e-90 335.1 253 61.3
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 4.6e-90 335.1 253 61.3
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 7.9e-90 334.3 254 60.6
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 1.3e-89 333.6 252 62.3
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.8e-89 333.2 247 62.3
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 3.0e-89 332.4 253 60.1
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 3.9e-89 332.0 252 62.3
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 3.9e-89 332.0 252 59.1
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 5.1e-89 331.6 252 61.5
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 8.7e-89 330.9 249 60.2
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 2.5e-88 329.3 247 61.1
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 9.6e-88 327.4 248 59.3
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 1.1e-86 323.9 251 58.2
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 3.1e-86 322.4 252 59.5
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 4.0e-86 322.0 252 61.5
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 1.2e-85 320.5 252 57.9
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 7.6e-85 317.8 253 59.3
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 1.0e-84 317.4 253 57.3
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 4.9e-84 315.1 252 59.9
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 8.4e-84 314.3 252 56.7
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 3.2e-83 312.4 264 58.0
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 1.2e-82 310.5 252 56.7
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 4.3e-80 302.0 230 60.0
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 2.0e-77 293.1 248 54.4
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 7.7e-77 291.2 239 54.0
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 5.5e-75 285.0 241 56.4
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 4.6e-74 282.0 203 61.1
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 5.7e-72 275.0 252 53.2
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 2.2e-71 273.1 251 53.4
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 8.2e-71 271.2 250 49.6
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 9.1e-70 267.7 253 48.6
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 5.5e-67 258.5 247 52.2
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 3.3e-64 249.2 252 48.4
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 3.8e-60 235.7 251 45.0
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 3.6e-58 229.2 269 44.6
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.4e-54 216.5 151 60.3
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 1.2e-48 197.6 136 69.1
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 2.9e-44 183.0 281 39.5
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 6.8e-41 171.8 260 40.8
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 2.8e-39 166.4 111 63.1
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 7.0e-38 161.8 101 76.2
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 3.7e-31 139.4 97 68.0
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 1.5e-19 100.9 70 54.3
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 1.8e-17 94.0 89 53.9
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 4.0e-17 92.8 153 38.6
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 2.6e-16 90.1 54 63.0
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 3.7e-15 86.3 49 67.3
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 1.6e-13 80.9 45 77.8
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 4.1e-06 56.2 120 33.3


User provided reference genes

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