Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27251 Brassica carinata HOM05D001245 ORTHO05D005230 2.9e-266 921.4 483 100.0
BcaB07g32157 Brassica carinata HOM05D001245 ORTHO05D005230 3.8e-202 708.4 575 70.8
C05p20610 Brassica napus HOM05D001245 ORTHO05D005230 6.4e-197 691.0 571 69.9
BolC5t30759H Brassica oleracea HOM05D001245 ORTHO05D005230 5.4e-196 688.0 571 69.7
Sp1g19160 Schrenkiella parvula HOM05D001245 ORTHO05D005230 3.0e-194 682.2 576 67.5
A06p17710 Brassica napus HOM05D001245 ORTHO05D005230 5.4e-188 661.4 572 66.1
BraA06t24863Z Brassica rapa HOM05D001245 ORTHO05D005230 5.4e-188 661.4 572 66.1
Thhalv10006690m.g Eutrema salsugineum HOM05D001245 ORTHO05D005230 7.0e-188 661.0 578 65.9
CARHR021990 Cardamine hirsuta HOM05D001245 ORTHO05D005230 2.6e-182 642.5 574 63.2
AL1G34780 Arabidopsis lyrata HOM05D001245 ORTHO05D005230 2.9e-181 639.0 578 63.7
Carub.0001s2106 Capsella rubella HOM05D001245 ORTHO05D005230 3.2e-180 635.6 576 63.2
AT1G21640 Arabidopsis thaliana HOM05D001245 ORTHO05D005230 4.6e-179 631.7 580 62.8
BcaC05g26081 Brassica carinata HOM05D001245 ORTHO05D005230 5.2e-167 591.7 574 60.5
Aa31LG7G5610 Aethionema arabicum HOM05D001245 ORTHO05D005230 1.3e-160 570.5 575 60.0
THA.LOC104800233 Tarenaya hassleriana HOM05D001245 ORTHO05D005230 3.7e-152 542.3 577 56.0
THA.LOC104810241 Tarenaya hassleriana HOM05D001245 ORTHO05D005230 3.1e-151 539.3 577 55.8
THA.LOC104818532 Tarenaya hassleriana HOM05D001245 ORTHO05D005230 3.1e-151 539.3 577 55.8
COL.COLO4_08843 Corchorus olitorius HOM05D001245 ORTHO05D005230 1.2e-105 387.9 605 42.3
Thecc.08G132700 Theobroma cacao HOM05D001245 ORTHO05D005230 1.3e-104 384.4 608 42.4
Atru.chr13.1559 Acer truncatum HOM05D001245 ORTHO05D005230 6.3e-104 382.1 596 42.6
Ciclev10000146m.g Citrus clementina HOM05D001245 ORTHO05D005230 1.1e-103 381.3 602 41.9
Gohir.A02G110300 Gossypium hirsutum HOM05D001245 ORTHO05D005230 5.0e-101 372.5 609 41.1
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 8.5e-101 371.7 605 39.8
Gohir.D03G069002 Gossypium hirsutum HOM05D001245 ORTHO05D005230 1.9e-100 370.5 600 40.3
Gorai.013G107600 Gossypium raimondii HOM05D001245 ORTHO05D005230 1.2e-99 367.9 600 40.2
Dinv14681 Davidia involucrata HOM05D001245 ORTHO05D005230 3.6e-99 366.3 603 40.5
Duzib093G0544 Durio zibethinus HOM05D001245 ORTHO05D005230 4.7e-99 365.9 613 41.4
TWI60G0016 Tripterygium wilfordii HOM05D001245 ORTHO05D005230 6.1e-99 365.5 626 40.4
Dinv27279 Davidia involucrata HOM05D001245 ORTHO05D005230 8.0e-99 365.2 617 39.9
Cfa018126 Carpinus fangiana HOM05D001245 ORTHO05D005230 1.0e-98 364.8 614 40.9
Gohir.D05G239900 Gossypium hirsutum HOM05D001245 ORTHO05D005230 1.8e-98 364.0 611 40.6
Cpa.g.sc64.149 Carica papaya HOM05D001245 ORTHO05D005230 3.0e-98 363.2 584 42.8
Gorai.009G248800 Gossypium raimondii HOM05D001245 ORTHO05D005230 4.0e-98 362.8 611 40.4
Actinidia29487 Actinidia chinensis HOM05D001245 ORTHO05D005230 1.5e-97 360.9 607 39.2
Potri.005G182600 Populus trichocarpa HOM05D001245 ORTHO05D005230 2.6e-97 360.1 581 40.4
Rhsim11G0071200 Rhododendron simsii HOM05D001245 ORTHO05D005230 1.7e-96 357.5 598 40.8
Sabra02G0061600 Salix brachista HOM05D001245 ORTHO05D005230 4.8e-96 355.9 612 39.1
CiPaw.16G023000 Carya illinoinensis HOM05D001245 ORTHO05D005230 1.4e-95 354.4 620 38.9
Sabra05G0138400 Salix brachista HOM05D001245 ORTHO05D005230 1.8e-95 354.0 616 40.1
Glyma.04G245800 Glycine max HOM05D001245 ORTHO05D005230 4.1e-95 352.8 592 38.7
Potri.002G078700 Populus trichocarpa HOM05D001245 ORTHO05D005230 9.1e-95 351.7 606 39.1
Prupe.1G489900 Prunus persica HOM05D001245 ORTHO05D005230 9.1e-95 351.7 607 39.9
CiPaw.15G031500 Carya illinoinensis HOM05D001245 ORTHO05D005230 1.2e-94 351.3 610 40.3
QL09p032559 Quercus lobata HOM05D001245 ORTHO05D005230 2.0e-94 350.5 619 39.4
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 3.5e-94 349.7 615 40.3
Lalb_Chr04g0253541 Lupinus albus HOM05D001245 ORTHO05D005230 5.9e-94 349.0 619 39.7
RcHm_v2.0_Chr6g0296671 Rosa chinensis HOM05D001245 ORTHO05D005230 7.7e-94 348.6 595 40.7
ECA232G2648 Erigeron canadensis HOM05D001245 ORTHO05D005230 1.0e-93 348.2 553 40.1
FvH4_2g27820 Fragaria vesca HOM05D001245 ORTHO05D005230 2.9e-93 346.7 571 40.5
Glyma.14G154600 Glycine max HOM05D001245 ORTHO05D005230 2.9e-93 346.7 615 39.2
HanXRQChr11g0326051 Helianthus annuus HOM05D001245 ORTHO05D005230 3.8e-93 346.3 548 39.6
Hma1.2p1_0420F.1_g149640 Hydrangea macrophylla HOM05D001245 ORTHO05D005230 8.6e-93 345.1 586 39.6
MD08G1160800 Malus domestica HOM05D001245 ORTHO05D005230 8.6e-93 345.1 605 39.2
CANSAT25G3405 Cannabis sativa HOM05D001245 ORTHO05D005230 1.5e-92 344.4 597 39.9
Nitab4.5_0003240g0050 Nicotiana tabacum HOM05D001245 ORTHO05D005230 1.5e-92 344.4 611 37.3
HanXRQChr09g0260671 Helianthus annuus HOM05D001245 ORTHO05D005230 2.5e-92 343.6 555 38.9
Medtr1g029620 Medicago truncatula HOM05D001245 ORTHO05D005230 2.5e-92 343.6 600 39.5
PGR044G1057 Punica granatum HOM05D001245 ORTHO05D005230 2.5e-92 343.6 583 39.6
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 7.2e-92 342.0 559 41.5
vmacro00860 Vaccinium macrocarpon HOM05D001245 ORTHO05D005230 7.2e-92 342.0 606 39.3
Psat6g040280 Pisum sativum HOM05D001245 ORTHO05D005230 1.2e-91 341.3 604 39.1
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.6e-91 340.9 574 40.9
Medtr3g088575 Medicago truncatula HOM05D001245 ORTHO05D005230 1.6e-91 340.9 606 38.4
Glyma.06G117300 Glycine max HOM05D001245 ORTHO05D005230 2.1e-91 340.5 603 38.3
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 2.8e-91 340.1 571 40.3
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 2.8e-91 340.1 562 41.5
Lsat_1_v5_gn_4_133761 Lactuca sativa HOM05D001245 ORTHO05D005230 2.8e-91 340.1 552 40.9
Nitab4.5_0006116g0040 Nicotiana tabacum HOM05D001245 ORTHO05D005230 2.8e-91 340.1 611 37.3
Glyma.13G032400 Glycine max HOM05D001245 ORTHO05D005230 3.6e-91 339.7 619 39.6
MELO3C010654.2 Cucumis melo HOM05D001245 ORTHO05D005230 4.7e-91 339.3 606 39.4
TPR.G30568 Trifolium pratense HOM05D001245 ORTHO05D005230 4.7e-91 339.3 607 38.4
Ca_16606_v3 Cicer arietinum L. HOM05D003077 ORTHO05D005230 8.0e-91 338.6 615 37.1
CsaV3_6G034080 Cucumis sativus L. HOM05D001245 ORTHO05D005230 1.4e-90 337.8 603 39.5
Eucgr.F03840 Eucalyptus grandis HOM05D001245 ORTHO05D005230 2.3e-90 337.0 592 39.7
Phvul.001G070700 Phaseolus vulgaris HOM05D001245 ORTHO05D005230 3.0e-90 336.7 615 38.7
Migut.C01062 Erythranthe guttata HOM05D001245 ORTHO05D005230 8.9e-90 335.1 600 38.0
Psat5g084880 Pisum sativum HOM05D001245 ORTHO05D005230 2.0e-89 334.0 605 39.0
ClCG08G006000 Citrullus lanatus HOM05D001245 ORTHO05D005230 4.4e-89 332.8 611 38.0
Peaxi162Scf00051g02115 Petunia axillaris HOM05D001245 ORTHO05D005230 5.7e-89 332.4 606 36.0
Lj1g0024618 Lotus japonicus HOM05D001245 ORTHO05D005230 9.8e-89 331.6 607 38.9
Nn5g28433 Nelumbo nucifera HOM05D001245 ORTHO05D005230 9.8e-89 331.6 620 37.3
Lj1g0027388 Lotus japonicus HOM05D001245 ORTHO05D005230 1.3e-88 331.3 591 39.1
SalBow7G3837 Salvia bowleyana HOM05D001245 ORTHO05D005230 4.9e-88 329.3 602 38.0
SalBow7G3974 Salvia bowleyana HOM05D001245 ORTHO05D005230 4.9e-88 329.3 602 38.0
Phvul.009G129700 Phaseolus vulgaris HOM05D001245 ORTHO05D005230 1.8e-87 327.4 588 36.7
CAN.G531.6 Capsicum annuum HOM05D001245 ORTHO05D005230 3.1e-87 326.6 610 36.7
PGSC0003DMG402011782 Solanum tuberosum HOM05D001245 ORTHO05D005230 4.1e-87 326.2 614 36.6
VMungo1309G0776 Vigna mungo HOM05D001245 ORTHO05D005230 4.1e-87 326.2 590 36.8
Hund26775 Selenicereus undatus HOM05D001245 ORTHO05D005230 2.7e-86 323.6 608 36.7
Nitab4.5_0001168g0130 Nicotiana tabacum HOM05D001245 ORTHO05D005230 3.5e-86 323.2 613 36.1
arahy.Tifrunner.gnm1.ann1.H3TQMF Arachis hypogaea HOM05D001245 ORTHO05D005230 4.5e-86 322.8 574 37.8
EL10Ac1g01342 Beta vulgaris HOM05D001245 ORTHO05D005230 5.9e-86 322.4 613 35.6
Sed0026204 Sechium edule HOM05D001245 ORTHO05D005230 5.9e-86 322.4 606 37.1
AUR62007719 Chenopodium quinoa HOM05D001245 ORTHO05D005230 1.7e-85 320.9 599 36.7
Nitab4.5_0002045g0010 Nicotiana tabacum HOM05D001245 ORTHO05D005230 1.7e-85 320.9 613 35.7
Oeu051976.1 Olea europaea HOM05D001245 ORTHO05D005230 2.3e-85 320.5 599 37.7
arahy.Tifrunner.gnm1.ann1.XY3TEF Arachis hypogaea HOM05D001245 ORTHO05D005230 2.9e-85 320.1 618 36.1
SGA_v2.0_scaffold52G18927 Striga asiatica HOM05D001245 ORTHO05D005230 2.9e-85 320.1 594 36.4
Aqoxy5G02377 Aquilegia oxysepala HOM05D001245 ORTHO05D005230 3.9e-85 319.7 605 36.2
Sopen06g020180 Solanum pennellii HOM05D001245 ORTHO05D005230 3.9e-85 319.7 606 35.3
Actinidia15219 Actinidia chinensis HOM05D001245 ORTHO05D005230 5.0e-85 319.3 591 38.7
arahy.Tifrunner.gnm1.ann1.MS2M1P Arachis hypogaea HOM05D001245 ORTHO05D005230 1.5e-84 317.8 576 37.5
Nn1g08964 Nelumbo nucifera HOM05D001245 ORTHO05D005230 4.3e-84 316.2 639 35.1
AUR62013423 Chenopodium quinoa HOM05D001245 ORTHO05D005230 7.3e-84 315.5 608 36.2
CSS0006563 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D005230 1.2e-83 314.7 574 38.9
Sc02g0004740 Simmondsia chinensis HOM05D001245 ORTHO05D005230 2.8e-83 313.5 615 35.9
CSS0001754 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D005230 1.8e-82 310.8 561 39.6
MSTRG.25362 Avicennia marina HOM05D001245 ORTHO05D005230 1.5e-81 307.8 605 36.4
MBI03_g28484_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D005230 4.4e-81 306.2 616 35.6
Hund17340 Selenicereus undatus HOM05D001245 ORTHO05D005230 7.5e-81 305.4 618 35.1
MSTRG.1415 Avicennia marina HOM05D001245 ORTHO05D005230 2.2e-80 303.9 611 36.3
Lalb_Chr08g0241121 Lupinus albus HOM05D001245 ORTHO05D005230 5.4e-79 299.3 561 38.3
Zm00001eb091060 Zea mays HOM05D001245 ORTHO05D005230 7.0e-79 298.9 598 35.6
PSO528G0171 Papaver somniferum HOM05D001245 ORTHO05D005230 3.0e-77 293.5 588 36.6
Manes.18G082200 Manihot esculenta HOM05D001245 ORTHO05D005230 3.9e-77 293.1 572 37.2
PSO170G3940 Papaver somniferum HOM05D001245 ORTHO05D005230 6.6e-77 292.4 588 36.2
Zm00001eb201410 Zea mays HOM05D001245 ORTHO05D005230 8.6e-77 292.0 592 35.8
Os11g0191400 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D005230 4.7e-75 286.2 598 35.6
ATR0584G287 Amborella trichopoda HOM05D001245 ORTHO05D005230 1.1e-74 285.0 620 33.1
CDE06G1485 Ceratophyllum demersum HOM05D001245 ORTHO05D005230 4.1e-71 273.1 521 37.0
CSS0005790 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D005230 7.1e-71 272.3 450 39.8
HPP92_009278 Vanilla planifolia HOM05D001245 ORTHO05D005230 8.6e-69 265.4 615 34.0
Solyc11g005100.3 Solanum lycopersicum HOM05D001245 ORTHO05D005230 1.3e-64 251.5 297 47.1
Sopen11g001100 Solanum pennellii HOM05D001245 ORTHO05D005230 1.3e-64 251.5 297 47.1
Cc10_g12740 Coffea canephora HOM05D001245 ORTHO05D005230 2.9e-64 250.4 376 40.7
GSVIVG01008810001 Vitis vinifera HOM05D001245 ORTHO05D005230 1.3e-61 241.5 523 35.0
Sed0025958 Sechium edule HOM05D001245 ORTHO05D005230 1.1e-60 238.4 572 33.7
SEGI_31825 Sequoiadendron giganteum HOM05D001245 ORTHO05D005230 1.6e-59 234.6 618 29.9
SEGI_32042 Sequoiadendron giganteum HOM05D001245 ORTHO05D005230 1.6e-59 234.6 618 29.9
BcaB04g17088 Brassica carinata HOM05D001245 ORTHO05D005230 2.1e-59 234.2 190 64.2
Lj7C350T12 Lonicera japonica HOM05D001245 ORTHO05D005230 2.1e-59 234.2 516 34.1
CDE08G0714 Ceratophyllum demersum HOM05D001245 ORTHO05D005230 2.4e-58 230.7 348 40.2
unitig_46.g18089 Utricularia gibba HOM05D001245 ORTHO05D005230 2.0e-49 201.1 396 39.4
TPR.G13467 Trifolium pratense HOM05D001245 ORTHO05D005230 4.2e-47 193.4 539 31.2
BcaB02g06946 Brassica carinata HOM05D001245 ORTHO05D005230 1.3e-45 188.3 117 81.2
Nn5g28337 Nelumbo nucifera HOM05D001245 ORTHO05D005230 2.4e-42 177.6 536 29.7
Pp3c18_2030 Physcomitrium patens HOM05D001245 ORTHO05D005230 6.4e-40 169.5 576 27.3
Gohir.A11G210300 Gossypium hirsutum HOM05D001245 ORTHO05D005230 3.2e-39 167.2 141 56.7
Mapoly0020s0027 Marchantia polymorpha HOM05D001245 ORTHO05D005230 4.6e-38 163.3 630 26.0
Gohir.A05G237900 Gossypium hirsutum HOM05D001245 ORTHO05D005230 4.6e-30 136.7 352 32.7
SMO196G0088 Selaginella moellendorffii HOM05D001245 ORTHO05D005230 1.5e-28 131.7 469 26.7
arahy.Tifrunner.gnm1.ann1.Q6HWVM Arachis hypogaea HOM05D001245 ORTHO05D005230 2.1e-27 127.9 354 31.9
Gohir.A05G341300 Gossypium hirsutum HOM05D001245 ORTHO05D005230 2.0e-25 121.3 127 48.0
unitig_46.g18090 Utricularia gibba HOM05D001245 ORTHO05D005230 2.5e-23 114.4 111 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3331 Anthoceros agrestis HOM05D001245 ORTHO05D005230 5.5e-23 113.2 606 24.6
Gohir.A13G092245 Gossypium hirsutum HOM05D001245 ORTHO05D005230 5.7e-20 103.2 103 50.5
CBR_g27885 Chara braunii HOM05D001245 ORTHO05D005230 8.8e-13 79.3 373 22.0
Gohir.A12G081100 Gossypium hirsutum HOM05D001245 ORTHO05D218232 1.3e-11 75.5 45 75.6
Solyc06g060060.4 Solanum lycopersicum HOM05D001245 ORTHO05D005230 1.1e-10 72.4 68 48.5
CAN.G526.14 Capsicum annuum HOM05D001245 ORTHO05D115202 9.1e-10 69.3 232 29.7
Cc10_g12730 Coffea canephora HOM05D001245 ORTHO05D005230 5.0e-08 63.5 41 80.5
Peaxi162Scf00066g00010 Petunia axillaris HOM05D001245 ORTHO05D005230 3.2e-07 60.8 41 75.6
MCO06G214 Micromonas commoda HOM05D001245 ORTHO05D005230 9.4e-07 59.3 104 34.6
Thhalv10024113m.g Eutrema salsugineum HOM05D001245 ORTHO05D005230 6.1e-06 56.6 37 81.1
Thhalv10024121m.g Eutrema salsugineum HOM05D001245 ORTHO05D005230 6.1e-06 56.6 37 81.1


User provided reference genes

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