Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.0e-115 420.2 233 100.0
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.2e-103 380.2 235 91.5
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.2e-103 380.2 235 91.5
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 5.7e-103 377.9 235 91.1
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 5.7e-103 377.9 235 91.1
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 5.6e-98 361.3 239 87.4
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.6e-84 316.6 236 81.4
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.2e-78 296.2 238 74.8
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.1e-69 267.3 239 72.4
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 1.9e-66 256.5 250 67.2
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 4.8e-65 251.9 262 66.4
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.4e-64 249.6 263 63.9
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 8.4e-62 241.1 243 64.6
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 9.3e-61 237.7 242 62.8
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.5e-60 235.7 247 65.6
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.4e-56 223.8 243 60.5
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.2e-54 216.5 257 58.0
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.2e-52 210.7 257 54.5
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 2.3e-43 179.9 250 54.0
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 5.1e-43 178.7 247 52.6
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 3.7e-41 172.6 260 50.4
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 4.1e-40 169.1 252 49.6
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 6.9e-40 168.3 255 49.8
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 3.4e-39 166.0 246 51.2
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 7.6e-39 164.9 253 51.4
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.2e-38 163.3 246 51.6
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 6.5e-38 161.8 246 50.0
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 2.5e-37 159.8 243 49.8
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.0e-35 154.5 245 49.8
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.3e-35 153.3 253 50.6
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 3.7e-33 146.0 214 50.5
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 8.5e-30 134.8 233 42.9
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.1e-29 134.4 233 42.9
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 4.2e-29 132.5 234 44.4
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.6e-28 130.6 235 44.3
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 2.1e-28 130.2 241 45.2
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 3.6e-28 129.4 247 44.5
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.7e-28 129.0 229 46.3
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.0e-27 127.9 233 43.8
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 2.3e-27 126.7 250 40.4
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.9e-27 125.9 235 43.8
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 5.1e-27 125.6 241 43.6
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 6.7e-27 125.2 234 42.7
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 6.7e-27 125.2 238 43.7
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 8.8e-27 124.8 234 41.5
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 8.8e-27 124.8 236 44.9
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 8.8e-27 124.8 233 42.5
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.1e-26 124.4 240 44.6
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 1.1e-26 124.4 242 43.0
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.5e-26 124.0 238 43.7
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 5.7e-26 122.1 239 43.5
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 5.7e-26 122.1 244 42.2
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 9.7e-26 121.3 236 41.5
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.2e-25 120.2 234 41.0
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-24 117.9 239 41.4
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 1.1e-24 117.9 241 40.2
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 1.4e-24 117.5 231 40.3
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.4e-24 117.5 233 45.1
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 2.4e-24 116.7 245 39.6
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.4e-24 116.7 238 42.9
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 3.1e-24 116.3 236 39.8
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.1e-24 116.3 237 41.4
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 4.1e-24 115.9 241 39.4
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 5.3e-24 115.5 238 39.9
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 6.9e-24 115.2 230 40.4
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 9.1e-24 114.8 233 41.2
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.5e-23 114.0 231 42.4
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.0e-23 113.6 234 40.6
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.7e-23 111.7 228 40.8
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.0e-22 111.3 210 42.9
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 1.3e-22 110.9 236 40.3
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 2.2e-22 110.2 235 40.0
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.5e-22 108.6 232 39.2
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.5e-22 108.2 237 38.4
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 8.5e-22 108.2 243 41.2
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.1e-21 107.8 236 36.0
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.4e-21 107.5 233 42.9
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 1.9e-21 107.1 220 41.8
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.9e-21 107.1 230 39.1
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.5e-21 106.7 227 39.6
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 2.5e-21 106.7 226 39.4
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 5.5e-21 105.5 239 40.2
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 7.2e-21 105.1 214 41.1
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 9.4e-21 104.8 244 40.6
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.2e-20 104.4 239 40.6
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 3.6e-20 102.8 210 42.4
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.7e-20 102.4 241 39.0
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.7e-20 102.4 241 39.0
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 6.1e-20 102.1 215 40.5
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.0e-19 101.3 236 40.7
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.4e-19 100.9 244 36.1
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 3.0e-19 99.8 232 37.9
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 6.7e-19 98.6 201 38.8
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.8e-19 98.2 220 40.0
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.1e-18 97.8 234 39.7
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 2.6e-18 96.7 238 35.3
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 2.6e-18 96.7 194 39.2
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 3.3e-18 96.3 224 40.2
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.4e-18 95.9 220 39.5
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.7e-18 94.7 215 39.5
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 1.7e-17 94.0 243 37.9
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.7e-17 94.0 236 39.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.4e-16 90.9 271 35.8
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 3.1e-16 89.7 201 38.8
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 4.1e-16 89.4 239 35.6
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.2e-15 87.8 202 38.6
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 7.7e-15 85.1 238 35.7
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.0e-14 84.7 212 38.7
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.0e-14 84.7 234 37.2
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.3e-14 84.3 215 38.1
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.7e-14 84.0 238 38.2
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.2e-14 83.6 267 31.1
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.9e-13 80.5 213 37.1
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 4.2e-13 79.3 205 40.5
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.7e-12 76.6 234 33.8
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 3.6e-12 76.3 204 38.2
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.7e-12 75.9 196 37.2
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 4.7e-12 75.9 234 33.3
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.0e-11 74.7 197 36.0
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.4e-11 74.3 305 27.9
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.8e-11 73.9 162 41.4
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 5.2e-11 72.4 207 35.3
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 8.8e-11 71.6 199 31.2
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.2e-10 71.2 316 27.5
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.4e-10 69.3 193 35.8
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 4.4e-10 69.3 120 41.7
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 2.2e-09 67.0 119 42.0
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.8e-09 66.6 147 38.1
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 4.8e-09 65.9 232 31.0
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 8.2e-09 65.1 167 36.5
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.8e-08 63.9 197 35.0
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.4e-08 63.5 179 33.0
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 3.1e-08 63.2 199 35.7
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.1e-08 63.2 139 39.6
A01p38570 Brassica napus HOM05D061175 ORTHO05D005518 4.1e-08 62.8 49 71.4
A01p38790 Brassica napus HOM05D061175 ORTHO05D005518 4.1e-08 62.8 49 71.4
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 5.3e-08 62.4 267 29.2
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 9.1e-08 61.6 196 34.7
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.2e-07 61.2 202 30.7
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 1.7e-06 57.4 167 32.9
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 3.8e-06 56.2 167 32.9
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 5.0e-06 55.8 205 31.7
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 6.5e-06 55.5 117 37.6
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 6.5e-06 55.5 117 37.6


User provided reference genes

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