Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.4e-161 572.8 275 100.0
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.5e-81 306.2 242 68.6
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.0e-70 270.0 257 59.5
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.9e-69 265.4 261 60.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 6.6e-66 255.0 240 60.0
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 5.4e-60 235.3 253 55.7
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.5e-59 232.6 275 52.7
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 5.8e-46 188.7 273 42.1
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 7.1e-44 181.8 272 43.8
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 5.1e-42 175.6 275 41.5
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.5e-41 174.1 270 41.9
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.9e-41 173.7 263 43.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.3e-41 172.6 273 40.7
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 7.4e-41 171.8 267 42.3
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 9.6e-41 171.4 285 40.7
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 4.1e-39 166.0 269 40.9
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 4.1e-39 166.0 262 41.6
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.5e-38 164.1 287 40.8
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.6e-38 163.3 278 41.0
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 4.5e-38 162.5 281 38.8
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-37 161.0 264 40.9
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.7e-37 160.6 283 38.9
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 2.2e-37 160.2 261 40.6
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.2e-37 160.2 261 40.6
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.9e-37 159.8 288 37.5
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.8e-37 159.5 261 41.0
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-36 157.5 262 40.1
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.9e-36 157.1 268 41.4
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 3.2e-36 156.4 299 38.8
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.2e-35 154.5 271 38.4
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.2e-35 154.5 275 40.0
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.1e-35 153.7 269 39.4
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.7e-35 153.3 228 39.9
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.5e-35 152.9 290 36.6
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 4.6e-35 152.5 278 39.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 6.1e-35 152.1 178 51.1
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.1e-35 152.1 272 39.7
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 6.1e-35 152.1 269 39.0
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.1e-35 152.1 240 41.2
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 7.9e-35 151.8 287 37.3
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.0e-34 151.4 268 38.4
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.8e-34 150.6 270 38.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.8e-34 150.6 275 38.2
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 2.3e-34 150.2 295 36.9
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.0e-34 149.8 274 38.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 3.9e-34 149.4 251 37.5
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.1e-34 149.1 265 37.4
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 6.7e-34 148.7 271 39.1
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 6.7e-34 148.7 269 40.5
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 6.7e-34 148.7 280 39.3
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.7e-34 148.3 159 50.9
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.1e-33 147.9 235 42.1
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.1e-33 147.9 271 39.5
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.5e-33 147.5 283 36.7
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.9e-33 147.1 274 36.5
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.9e-33 147.1 274 36.5
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.5e-33 146.7 128 59.4
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 2.5e-33 146.7 269 37.9
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 5.7e-33 145.6 233 37.3
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 7.4e-33 145.2 261 37.9
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 7.4e-33 145.2 232 37.9
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 9.7e-33 144.8 129 54.3
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.3e-32 144.4 231 39.4
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.3e-32 144.4 265 39.6
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.3e-32 144.4 261 37.9
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.6e-32 144.1 294 36.4
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.6e-32 144.1 269 37.9
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.8e-32 143.3 125 54.4
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 2.8e-32 143.3 129 53.5
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.8e-32 143.3 270 38.1
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.7e-32 142.9 276 37.3
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.7e-32 142.9 270 37.0
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 3.7e-32 142.9 126 57.9
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.7e-32 142.9 332 33.1
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 3.7e-32 142.9 135 54.1
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 3.7e-32 142.9 135 54.1
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 4.8e-32 142.5 275 36.0
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 8.2e-32 141.7 272 37.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 8.2e-32 141.7 126 57.1
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 8.2e-32 141.7 126 57.1
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 8.2e-32 141.7 125 54.4
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 8.2e-32 141.7 126 57.1
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.1e-31 141.4 279 37.6
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.1e-31 141.4 274 36.9
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.4e-31 141.0 284 35.2
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.8e-31 140.6 140 51.4
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.8e-31 140.6 235 39.6
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.4e-31 140.2 316 34.5
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.4e-31 140.2 316 34.5
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 3.1e-31 139.8 132 51.5
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 4.1e-31 139.4 235 37.4
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 6.9e-31 138.7 270 37.0
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 9.0e-31 138.3 291 35.1
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.2e-30 137.9 140 50.7
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.5e-30 137.5 116 58.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.5e-30 137.5 254 37.4
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.6e-30 136.7 124 57.3
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 5.9e-30 135.6 130 53.8
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 7.7e-30 135.2 124 55.6
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.0e-29 134.8 268 38.4
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.3e-29 134.4 276 36.6
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.7e-29 134.0 272 35.7
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.7e-29 134.0 144 48.6
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.7e-29 134.0 116 58.6
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.7e-29 134.0 130 53.8
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.2e-29 133.7 126 53.2
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.2e-29 133.7 124 54.0
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 2.9e-29 133.3 165 44.8
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 8.5e-29 131.7 125 55.2
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.1e-28 131.3 146 49.3
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.4e-28 131.0 268 36.9
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.9e-28 130.6 125 53.6
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.9e-28 130.6 125 53.6
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.9e-28 130.6 125 53.6
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.9e-28 130.6 125 53.6
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.9e-28 130.6 125 53.6
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 1.9e-28 130.6 144 47.9
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.2e-28 129.8 125 53.6
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 4.2e-28 129.4 273 34.1
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 4.2e-28 129.4 268 33.6
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 5.5e-28 129.0 134 50.0
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 9.4e-28 128.3 145 47.6
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 9.4e-28 128.3 125 52.0
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.2e-27 127.9 263 38.0
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.6e-27 127.5 145 48.3
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.6e-27 127.5 148 48.0
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.1e-27 127.1 126 52.4
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.0e-26 124.8 248 38.7
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.4e-26 124.4 129 51.9
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.8e-26 124.0 122 54.1
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.9e-26 122.9 130 50.8
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.9e-26 122.9 127 54.3
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 6.7e-26 122.1 126 50.0
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.1e-25 121.3 250 34.8
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.3e-25 119.8 274 33.9
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.2e-24 117.1 128 48.4
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 8.2e-24 115.2 97 60.8
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 3.1e-23 113.2 127 49.6
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 7.7e-22 108.6 240 35.8
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 7.7e-22 108.6 126 48.4
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.9e-20 104.0 250 33.6
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.2e-20 103.2 199 35.2
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 5.5e-20 102.4 281 33.1
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 7.2e-20 102.1 121 46.3
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.2e-19 101.3 139 41.7
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.7e-19 99.4 83 60.2
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 7.9e-19 98.6 121 43.0
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 7.9e-19 98.6 121 43.0
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 8.8e-18 95.1 115 45.2
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.7e-16 90.9 122 42.6
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.2e-16 90.5 83 53.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 3.1e-15 86.7 113 40.7
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.3e-13 81.3 61 63.9
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 3.7e-08 63.2 124 33.9


User provided reference genes

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