Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1959.9 1051 100.0
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1837.4 1045 94.5
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1837.4 1045 94.5
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 0.0e+00 1817.4 1054 93.2
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1815.0 1054 93.1
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1804.6 1079 91.1
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1767.7 1052 89.6
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1707.2 1048 87.6
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1662.1 1049 84.2
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1658.3 1054 85.0
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1632.1 1054 84.3
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 0.0e+00 1603.2 1063 82.4
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1567.7 1056 78.8
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1399.0 1065 71.8
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1164.4 1035 61.1
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1164.1 1048 61.1
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1158.3 1049 60.2
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1156.4 1017 61.4
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1156.0 1037 61.1
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1138.6 1048 59.4
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1131.7 1046 59.3
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1129.8 1044 60.5
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1120.5 1037 59.2
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1115.1 1162 55.0
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1114.0 1039 59.4
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1114.0 966 61.7
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1113.6 1035 59.6
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1109.0 976 61.0
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1107.8 1042 58.2
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1105.1 1035 58.5
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1100.1 1037 59.0
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1088.6 1046 57.9
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1088.2 941 61.8
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1087.4 1019 58.2
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1086.6 1035 58.7
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1084.7 1043 57.9
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1075.1 1027 58.0
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 1.4e-311 1073.2 1043 56.8
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.4e-311 1072.8 1001 60.0
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 2.9e-311 1072.0 1038 56.6
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 6.5e-311 1070.8 1059 55.9
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 6.5e-311 1070.8 970 58.9
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 1.4e-310 1069.7 1046 57.4
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.2e-310 1068.1 1033 57.1
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 2.3e-308 1062.4 1057 56.1
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 5.1e-308 1061.2 1043 57.9
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.1e-307 1060.1 1044 56.2
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 4.3e-307 1058.1 1055 56.2
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 1.6e-306 1056.2 1047 55.9
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 1.6e-306 1056.2 1047 56.8
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 5.3e-305 1051.2 1043 56.3
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.2e-304 1050.0 1041 55.9
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 1.5e-304 1049.7 1041 56.1
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 1.5e-304 1049.7 1044 57.4
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 2.2e-303 1045.8 1005 56.9
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 2.9e-303 1045.4 1043 55.7
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 4.9e-303 1044.6 1026 58.0
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 1.1e-302 1043.5 1048 56.5
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 1.1e-302 1043.5 1007 56.8
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 5.5e-302 1041.2 1039 55.6
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 1.6e-301 1039.6 1036 56.6
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 6.0e-301 1037.7 1047 54.8
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 1.3e-300 1036.6 971 58.7
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 1.1e-299 1033.5 1046 55.7
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 1.1e-299 1033.5 1044 56.3
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 2.5e-299 1032.3 1048 55.0
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 7.4e-299 1030.8 1044 55.1
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 6.2e-298 1027.7 1054 55.2
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 1.1e-297 1026.9 1008 56.5
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 1.2e-296 1023.5 1015 55.8
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 3.4e-296 1021.9 1042 55.2
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 1.3e-295 1020.0 1023 56.8
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 3.2e-294 1015.4 1046 53.2
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 7.1e-294 1014.2 1046 55.7
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 4.6e-293 1011.5 1039 54.9
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 6.0e-293 1011.1 1045 54.9
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 1.1e-289 1000.3 1035 55.2
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 1.7e-287 993.0 1027 54.8
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 7.4e-283 977.6 1072 53.2
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.9e-278 963.0 995 53.6
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 9.4e-278 960.7 1050 51.6
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 3.9e-276 955.3 1048 52.5
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.0e-275 953.0 1048 52.4
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 1.8e-268 929.9 1042 50.5
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 2.6e-259 899.4 746 64.1
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.1e-257 894.0 746 63.7
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 6.5e-255 884.8 746 62.6
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 6.1e-253 878.2 760 62.4
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 1.4e-252 877.1 779 59.3
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.0e-251 873.2 846 56.0
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 5.7e-251 871.7 659 77.5
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 7.7e-248 861.3 1197 45.4
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 8.8e-244 847.8 937 51.8
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 1.3e-242 844.0 757 58.7
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 7.5e-235 818.1 1043 50.2
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 3.0e-231 806.2 1042 48.0
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 4.5e-195 686.0 634 56.3
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 2.2e-194 683.7 966 43.6
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 5.1e-191 672.5 559 61.2
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 6.7e-191 672.2 558 65.1
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 2.5e-182 643.7 669 53.7
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 3.5e-176 623.2 1045 38.1
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 4.3e-174 616.3 617 54.9
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.2e-162 577.4 711 47.5
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 5.3e-156 556.2 915 38.7
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 2.6e-155 553.9 900 38.8
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 6.5e-138 496.1 998 35.3
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 7.2e-137 492.7 429 59.7
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 7.1e-84 316.6 326 52.5
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 8.1e-80 303.1 248 62.9
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.5e-73 282.3 957 27.6
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 2.4e-71 275.0 292 50.7
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 1.5e-70 272.3 397 43.1
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 2.6e-70 271.6 346 43.9
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-69 268.9 427 39.8
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 1.6e-64 252.3 793 31.4
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.1e-63 249.6 197 62.4
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 5.3e-63 247.3 242 57.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 5.1e-58 230.7 195 57.4
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 5.7e-57 227.3 986 26.8
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.1e-55 223.0 291 47.8
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 9.0e-55 219.9 239 54.4
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.8e-40 171.8 260 46.5
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.4e-36 159.5 140 61.4
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 9.7e-33 146.7 104 72.1
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.3e-29 136.3 271 41.3
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.8e-18 99.4 64 67.2
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 8.8e-18 97.1 84 60.7
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 3.4e-17 95.1 68 70.6
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.3e-16 93.2 67 71.6
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 4.5e-14 84.7 274 27.4
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.5e-14 84.7 70 57.1
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 2.9e-13 82.0 59 72.9
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 3.8e-13 81.6 51 78.4
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 8.6e-13 80.5 77 58.4
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 6.8e-10 70.9 61 57.4
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 5.7e-09 67.8 45 75.6
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.7e-06 58.9 50 56.0
SEGI_22187 Sequoiadendron giganteum HOM05D005365 ORTHO05D000227 5.9e-06 57.8 44 59.1


User provided reference genes

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