Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 8.4e-157 557.0 284 100.0
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 8.0e-91 337.8 260 72.3
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 1.0e-90 337.4 261 71.6
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 9.8e-89 330.9 261 70.9
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.7e-88 330.1 261 70.1
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 6.4e-88 328.2 260 70.0
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.9e-87 326.6 259 69.5
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 3.2e-87 325.9 261 68.2
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.6e-86 323.6 261 67.8
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 4.6e-86 322.0 261 69.0
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.3e-85 320.5 261 67.4
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 3.1e-82 309.3 261 65.1
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 4.4e-81 305.4 284 64.1
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 6.4e-80 301.6 225 75.1
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.9e-79 300.1 260 63.5
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 5.4e-79 298.5 205 77.1
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 2.1e-75 286.6 208 75.0
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 8.1e-75 284.6 237 70.0
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 6.8e-74 281.6 260 59.2
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 4.4e-73 278.9 260 58.1
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 5.8e-73 278.5 261 59.8
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 9.9e-73 277.7 260 58.8
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 9.9e-73 277.7 260 58.1
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 9.9e-73 277.7 261 59.8
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.3e-72 277.3 261 59.8
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 2.9e-72 276.2 260 58.8
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.7e-72 275.8 260 58.1
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 3.7e-72 275.8 260 58.5
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 4.9e-72 275.4 260 58.8
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 4.9e-72 275.4 262 58.8
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 6.4e-72 275.0 237 68.8
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 6.4e-72 275.0 260 57.7
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 6.4e-72 275.0 260 57.7
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 8.4e-72 274.6 260 58.1
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 8.4e-72 274.6 260 59.2
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 1.1e-71 274.2 260 58.1
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 2.4e-71 273.1 261 58.2
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 4.1e-71 272.3 260 58.5
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.6e-70 270.4 260 57.3
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.7e-70 269.6 260 57.7
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.7e-70 269.6 263 58.2
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 6.0e-70 268.5 260 58.5
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 7.8e-70 268.1 266 55.3
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.3e-69 267.3 260 57.3
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 1.3e-69 267.3 260 56.5
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.3e-69 267.3 260 56.9
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.3e-69 267.3 258 56.6
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 3.0e-69 266.2 272 54.0
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 3.9e-69 265.8 260 57.7
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 6.6e-69 265.0 260 55.0
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 8.6e-69 264.6 259 55.2
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.1e-68 264.2 260 55.0
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 1.1e-68 264.2 260 55.8
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.9e-68 263.5 260 56.5
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 3.3e-68 262.7 260 55.0
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 4.3e-68 262.3 260 56.2
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 4.3e-68 262.3 260 55.0
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 7.3e-68 261.5 253 62.8
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 7.3e-68 261.5 260 55.8
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.6e-67 260.4 254 59.1
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 2.1e-67 260.0 260 54.6
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 3.6e-67 259.2 260 55.8
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 6.2e-67 258.5 260 55.0
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.4e-66 257.3 260 55.0
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.4e-66 257.3 260 54.2
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 1.8e-66 256.9 257 54.5
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 4.0e-66 255.8 260 53.5
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 5.2e-66 255.4 260 54.6
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 5.2e-66 255.4 260 53.5
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 5.2e-66 255.4 259 54.4
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 8.9e-66 254.6 260 54.2
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.2e-65 254.2 260 55.4
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.5e-65 253.8 260 54.6
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 5.8e-65 251.9 260 53.1
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 9.9e-65 251.1 260 55.4
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 4.9e-64 248.8 260 53.8
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 4.9e-64 248.8 260 54.2
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 8.4e-64 248.1 259 53.3
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 4.2e-63 245.7 251 53.8
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 4.2e-63 245.7 259 53.3
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 4.2e-63 245.7 260 52.7
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 5.4e-63 245.4 259 53.7
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.7e-62 243.0 264 52.7
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 6.0e-62 241.9 258 53.5
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.8e-62 241.5 305 47.2
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.7e-61 240.4 282 50.4
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 6.6e-61 238.4 271 50.2
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.9e-60 236.9 286 49.0
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.9e-60 236.9 261 52.1
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 2.5e-60 236.5 174 72.4
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.3e-60 236.1 279 49.1
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.3e-60 236.1 279 48.7
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.3e-60 235.0 279 49.1
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 3.6e-59 232.6 237 53.6
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 3.1e-58 229.6 208 63.9
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 1.5e-57 227.3 238 54.2
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 6.4e-56 221.9 251 49.8
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 2.4e-55 219.9 261 50.2
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 4.2e-55 219.2 230 52.6
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 9.6e-52 208.0 232 52.6
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 3.1e-50 203.0 157 69.4
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 9.0e-50 201.4 260 44.6
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 6.4e-48 195.3 258 44.6
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 3.2e-47 193.0 169 62.1
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.8e-45 187.2 159 66.0
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.5e-44 184.1 255 43.5
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.9e-44 183.7 255 43.5
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.9e-44 183.7 255 43.5
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 1.4e-42 177.6 124 74.2
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 5.3e-42 175.6 122 76.2
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 2.6e-41 173.3 200 56.5
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.2e-40 170.2 255 42.4
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 3.8e-40 169.5 240 45.4
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 7.1e-39 165.2 124 68.5
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 8.7e-37 158.3 86 93.0
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 2.8e-35 153.3 178 51.1
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.2e-33 147.9 100 78.0
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 4.5e-33 146.0 84 88.1
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.0e-32 144.8 121 62.0
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.3e-29 133.7 185 43.8
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 3.8e-24 116.3 61 95.1
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 2.3e-21 107.1 73 67.1
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 5.3e-18 95.9 105 55.2
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 9.1e-18 95.1 159 39.6
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 3.2e-15 86.7 112 42.9
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 3.7e-11 73.2 261 25.7
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 4.1e-10 69.7 250 24.0
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 1.3e-08 64.7 57 61.4


User provided reference genes

Program Settings