Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 4.1e-100 368.2 212 100.0
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 4.4e-86 321.6 180 91.7
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 9.9e-86 320.5 180 90.6
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 9.9e-86 320.5 180 90.6
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 9.9e-86 320.5 180 90.6
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 2.2e-85 319.3 180 90.6
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 8.4e-77 290.8 180 83.3
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 5.5e-68 261.5 183 77.0
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.5e-62 243.4 183 72.7
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.3e-58 229.6 176 71.6
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 6.7e-58 228.0 186 69.4
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 1.5e-54 216.9 179 69.3
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 2.9e-45 186.0 194 55.2
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 2.2e-37 159.8 201 50.7
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 3.2e-36 156.0 194 50.5
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 3.2e-36 156.0 239 44.4
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 3.2e-36 156.0 175 55.4
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 5.5e-36 155.2 194 50.0
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 5.5e-36 155.2 194 50.0
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 1.6e-35 153.7 194 50.0
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 2.1e-35 153.3 194 50.5
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 4.0e-34 149.1 194 47.9
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.3e-32 144.1 206 47.1
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.7e-32 143.7 211 47.9
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 4.8e-32 142.1 217 55.3
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 1.1e-28 131.0 208 44.7
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 6.8e-26 121.7 187 43.3
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 9.1e-23 111.3 202 39.1
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 7.0e-15 85.1 162 44.4
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 1.7e-13 80.5 104 51.0
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 5.0e-13 79.0 173 40.5
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 4.3e-12 75.9 158 41.8
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 5.6e-12 75.5 171 37.4
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 5.6e-12 75.5 157 34.4
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 7.3e-12 75.1 159 37.1
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 2.1e-11 73.6 173 35.3
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 3.6e-11 72.8 176 35.8
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 4.7e-11 72.4 93 49.5
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 6.1e-11 72.0 154 39.0
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.4e-10 70.9 178 37.1
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 1.8e-10 70.5 93 45.2
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 3.0e-10 69.7 101 43.6
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 3.0e-10 69.7 174 35.6
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 3.0e-10 69.7 96 43.8
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 3.0e-10 69.7 157 41.4
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 6.8e-10 68.6 180 36.1
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 6.8e-10 68.6 165 39.4
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 8.9e-10 68.2 93 48.4
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 1.2e-09 67.8 157 37.6
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 1.2e-09 67.8 180 36.7
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 1.5e-09 67.4 161 38.5
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 1.5e-09 67.4 167 35.9
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 1.5e-09 67.4 188 36.7
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 2.0e-09 67.0 161 37.9
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 2.6e-09 66.6 170 34.1
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 2.6e-09 66.6 157 36.9
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 7.5e-09 65.1 165 34.5
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 7.5e-09 65.1 159 37.1
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 7.5e-09 65.1 94 46.8
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 9.8e-09 64.7 94 47.9
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 9.8e-09 64.7 94 42.6
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.3e-08 64.3 163 35.6
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 1.3e-08 64.3 97 45.4
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.3e-08 64.3 165 32.7
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.7e-08 63.9 163 35.0
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.7e-08 63.9 155 36.1
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 2.2e-08 63.5 164 36.6
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 2.2e-08 63.5 93 45.2
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.9e-08 63.2 158 36.1
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 3.7e-08 62.8 96 41.7
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 4.9e-08 62.4 92 46.7
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 8.3e-08 61.6 140 32.9
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 8.3e-08 61.6 176 31.2
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 1.1e-07 61.2 103 40.8
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 1.1e-07 61.2 162 34.0
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 1.1e-07 61.2 96 44.8
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 1.1e-07 61.2 170 31.2
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 2.4e-07 60.1 94 43.6
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 4.1e-07 59.3 93 44.1
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.1e-07 59.3 98 40.8
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 5.4e-07 58.9 93 40.9
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 7.0e-07 58.5 159 35.8
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 7.0e-07 58.5 154 36.4
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 1.6e-06 57.4 102 42.2
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.6e-06 57.4 87 44.8
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 2.7e-06 56.6 95 40.0
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 3.5e-06 56.2 136 33.8
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 5.9e-06 55.5 180 30.6
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 7.8e-06 55.1 133 34.6


User provided reference genes

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