Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1490.7 747 100.0
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1484.5 747 99.5
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1478.8 747 98.9
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1476.5 747 98.8
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1476.5 747 98.8
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1476.1 747 98.8
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1448.3 747 96.7
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1440.2 746 96.1
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1433.7 747 95.7
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1425.6 747 94.6
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1418.7 780 91.8
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1399.4 747 93.0
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1390.9 748 93.3
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1387.9 754 92.7
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1350.5 750 89.5
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1318.1 750 87.1
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1271.1 747 83.3
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 749 82.2
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 747 81.5
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 748 82.0
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 750 82.1
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 750 82.4
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 747 81.7
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1238.4 749 82.0
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 746 81.5
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 747 80.6
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1229.9 750 80.8
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1228.4 747 80.5
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1228.0 747 81.5
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 748 81.1
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 750 80.5
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1224.5 749 80.6
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 748 80.7
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 747 79.9
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 747 80.5
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 748 80.7
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 750 80.3
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 749 81.2
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1218.4 746 79.9
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1218.0 750 80.1
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1218.0 752 80.1
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 748 80.6
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 748 80.7
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 748 80.9
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 751 80.4
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 748 79.1
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 749 80.6
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 746 79.9
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 748 79.1
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 747 79.8
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 752 79.5
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 746 79.1
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 748 79.9
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 750 80.4
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 748 80.5
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 745 79.9
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 745 79.9
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 747 79.8
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 745 79.5
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 752 79.9
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 748 79.4
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1205.3 745 79.7
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1204.5 747 79.9
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 748 79.5
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 781 77.1
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 746 79.8
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1201.0 760 78.8
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 747 79.7
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 745 80.3
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 746 79.9
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 749 78.6
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 748 79.1
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1194.5 802 75.3
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 746 78.7
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1193.7 750 78.7
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1193.7 747 79.0
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1192.2 746 79.8
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 760 79.6
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1191.4 750 79.3
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 748 79.0
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1190.3 749 78.9
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1189.5 749 78.0
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 760 79.3
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 742 79.5
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1186.4 747 78.4
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1186.4 749 79.4
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1185.2 750 78.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1184.1 751 78.3
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1182.5 750 77.9
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1181.0 843 71.9
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1180.6 742 78.3
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 748 78.6
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 710 81.0
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1177.9 748 78.2
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1175.2 748 77.5
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1174.5 750 78.7
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1172.9 692 81.9
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1171.8 711 80.6
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1168.3 750 77.3
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1168.3 751 77.8
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1166.0 752 76.6
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1155.6 748 77.1
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1154.8 741 77.1
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1132.1 720 77.6
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1119.0 749 74.4
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1115.1 657 82.2
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1115.1 657 82.0
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1112.1 657 81.9
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1110.5 749 74.5
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1105.1 665 81.7
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1105.1 747 74.2
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1098.2 733 74.5
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1082.8 748 74.1
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 2.0e-311 1072.0 733 72.9
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.2e-306 1056.2 1055 55.3
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 2.1e-303 1045.4 657 79.1
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 6.4e-297 1023.8 624 80.9
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.7e-289 999.2 749 68.8
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.4e-280 969.5 677 69.9
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.3e-276 956.4 677 67.1
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 8.1e-276 953.7 677 68.5
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 8.1e-276 953.7 677 68.5
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.1e-275 951.8 677 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 9.0e-275 950.3 678 67.1
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.4e-274 948.3 685 68.0
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.2e-250 870.2 679 62.7
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 6.5e-249 864.4 592 73.3
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 2.6e-245 852.4 592 72.8
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 3.6e-223 778.9 679 56.7
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 4.0e-222 775.4 696 57.5
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 3.7e-212 742.3 676 56.7
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.9e-200 703.4 676 58.9
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 5.4e-195 685.3 676 51.5
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 7.8e-170 601.7 305 97.0
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 3.0e-169 599.7 700 45.4
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 4.0e-158 562.8 323 87.0
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.8e-153 547.4 294 90.5
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 8.2e-151 538.5 361 72.9
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 7.4e-144 515.4 300 85.0
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.4e-129 468.0 301 77.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 9.1e-118 428.7 309 68.0
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.0e-105 386.7 236 78.0
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 2.7e-93 347.4 241 71.8
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 2.8e-90 337.4 225 76.9
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 3.6e-90 337.0 219 76.3
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.6e-85 321.6 299 59.5
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.8e-85 319.3 299 58.5
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 5.6e-67 260.0 172 72.7
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-65 255.8 125 96.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.2e-64 252.3 394 43.9
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.5e-64 251.9 175 73.1
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.6e-61 241.9 364 39.0
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.3e-58 232.3 113 96.5
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.4e-57 228.8 260 50.4
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.4e-46 192.2 141 71.6
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.0e-45 186.8 117 77.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.8e-41 175.3 165 57.6
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.2e-37 162.5 102 72.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 3.9e-36 157.5 86 83.7
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 4.8e-34 150.6 142 53.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.8e-33 148.7 122 63.1
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 2.5e-30 138.3 124 63.7
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 4.6e-29 134.0 83 77.1
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 5.7e-27 127.1 105 61.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 6.3e-26 123.6 140 50.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 6.3e-26 123.6 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.0e-23 116.3 99 62.6
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.7e-23 115.5 141 52.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 8.5e-23 113.2 221 30.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.1e-14 86.3 49 77.6
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 2.1e-13 82.0 56 71.4
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 5.7e-11 73.9 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.0 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 7.2e-06 57.0 35 71.4


User provided reference genes

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