Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 8.4e-241 836.6 435 100.0
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 6.7e-97 358.6 219 86.8
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 8.8e-97 358.2 224 84.4
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.7e-95 354.0 219 85.8
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 4.1e-94 349.4 232 81.9
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 2.0e-85 320.5 226 79.2
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.6e-77 294.3 231 75.3
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 2.9e-71 273.5 237 67.9
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 4.7e-66 256.1 231 64.9
C03p58990 Brassica napus HOM05D025854 ORTHO05D033073 1.0e-65 255.0 206 67.5
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.4e-65 254.6 233 68.7
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 4.9e-63 246.1 230 63.9
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.1e-62 245.0 227 63.9
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 3.2e-54 216.9 227 60.4
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 4.1e-54 216.5 227 57.3
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.4e-46 190.7 221 55.7
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.0e-44 185.3 234 50.4
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 5.1e-44 183.0 235 49.4
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 4.3e-43 179.9 240 49.6
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 9.6e-43 178.7 237 48.5
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 1.2e-42 178.3 232 48.3
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 1.2e-42 178.3 202 51.0
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.6e-42 177.9 240 47.1
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.6e-42 177.9 234 47.9
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 2.1e-42 177.6 199 51.3
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 4.7e-42 176.4 232 47.8
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.4e-41 174.9 241 46.1
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.4e-41 174.1 238 47.1
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 6.8e-41 172.6 201 49.8
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.5e-40 171.4 233 50.6
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.3e-39 168.3 201 52.2
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.7e-39 167.9 230 47.8
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.2e-39 167.5 232 45.7
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 2.2e-39 167.5 198 51.0
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 2.2e-39 167.5 195 49.7
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.8e-39 166.8 233 44.6
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 8.4e-39 165.6 201 48.8
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.4e-38 164.9 226 43.8
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 5.4e-38 162.9 234 45.3
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 5.4e-38 162.9 196 49.5
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 9.3e-38 162.2 196 49.0
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.2e-37 161.8 198 49.0
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.2e-37 161.8 201 49.8
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.6e-37 161.4 228 45.6
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.1e-37 161.0 234 44.9
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.7e-37 160.6 222 46.8
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 2.7e-37 160.6 204 46.6
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 3.5e-37 160.2 262 42.0
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 4.6e-37 159.8 226 46.5
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 6.0e-37 159.5 201 45.8
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 6.0e-37 159.5 235 45.1
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.0e-36 158.7 201 45.8
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.7e-36 157.9 234 43.6
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.7e-36 157.9 194 44.8
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 3.0e-36 157.1 232 46.1
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 5.1e-36 156.4 191 47.6
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 6.6e-36 156.0 235 44.7
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 8.7e-36 155.6 251 41.8
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.5e-35 154.8 234 45.7
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.5e-35 154.8 235 44.3
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 2.5e-35 154.1 192 46.9
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 2.5e-35 154.1 201 45.8
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.5e-35 154.1 232 44.8
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 7.3e-35 152.5 239 43.1
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 7.3e-35 152.5 234 43.2
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 9.6e-35 152.1 198 47.0
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.6e-34 150.2 231 44.2
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.8e-34 149.8 250 40.4
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-33 148.3 193 45.1
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-33 148.3 193 45.1
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.4e-33 148.3 224 42.0
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.8e-33 147.9 226 42.0
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.8e-33 147.9 223 43.0
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.4e-33 147.5 186 43.5
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 2.4e-33 147.5 277 36.5
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.1e-33 147.1 252 42.5
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.9e-33 146.0 228 40.8
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 9.0e-33 145.6 232 42.2
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.0e-33 145.6 224 41.5
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.0e-33 145.6 224 41.5
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.2e-32 145.2 188 46.3
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.5e-32 144.8 221 42.5
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.5e-32 144.8 230 42.2
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.0e-32 144.4 178 48.9
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 2.0e-32 144.4 233 41.6
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 2.0e-32 144.4 194 46.4
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 2.6e-32 144.1 207 44.4
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 2.6e-32 144.1 209 45.0
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.4e-32 143.7 192 44.8
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-32 143.3 198 45.5
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-31 141.7 203 45.8
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.3e-31 141.7 201 42.8
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 2.2e-31 141.0 192 43.8
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.2e-31 141.0 199 43.7
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.9e-31 140.6 185 45.4
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 3.8e-31 140.2 203 44.8
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 4.9e-31 139.8 192 44.3
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 4.9e-31 139.8 186 47.3
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 6.4e-31 139.4 199 44.7
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 8.4e-31 139.0 245 40.4
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 8.4e-31 139.0 188 46.8
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 3.2e-30 137.1 233 40.8
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 9.3e-30 135.6 231 41.6
C01p39010 Brassica napus HOM05D025854 ORTHO05D033073 1.6e-29 134.8 177 47.5
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 2.7e-29 134.0 191 47.1
BolC1t03850H Brassica oleracea HOM05D025854 ORTHO05D033073 1.7e-28 131.3 108 68.5
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 2.3e-28 131.0 229 41.0
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 3.9e-28 130.2 189 43.9
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-27 128.6 191 43.5
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.3e-27 127.1 199 40.7
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.3e-27 126.7 203 42.9
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-26 125.2 190 43.2
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 4.8e-26 123.2 242 36.8
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 8.1e-26 122.5 203 41.4
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.1e-25 122.1 226 38.9
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.9e-25 119.4 183 41.0
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.6e-24 117.5 237 35.4
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 2.6e-24 117.5 110 52.7
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 3.4e-24 117.1 227 37.9
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 7.6e-24 115.9 177 42.4
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.7e-23 114.8 218 36.2
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 6.4e-23 112.8 233 36.5
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-22 112.1 198 40.4
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 1.2e-21 108.6 223 37.7
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 4.6e-21 106.7 179 42.5
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.9e-21 105.9 165 41.8
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.3e-20 105.1 218 37.6
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-20 105.1 174 37.9
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 1.3e-20 105.1 110 49.1
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 3.3e-19 100.5 157 41.4
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-18 98.2 172 37.2
BcaB08g34839 Brassica carinata HOM05D025854 ORTHO05D092050 8.1e-18 95.9 64 76.6
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.8e-17 94.7 221 36.2
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 4.0e-17 93.6 106 52.8
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 6.9e-17 92.8 156 37.8
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 7.6e-16 89.4 235 34.0
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-15 88.6 161 40.4
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.3e-15 88.6 122 45.9
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 3.8e-15 87.0 194 34.5
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.4e-14 85.1 77 57.1
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.5e-14 84.3 133 39.1
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 3.9e-12 77.0 160 35.6
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 5.1e-12 76.6 150 32.7
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 1.9e-11 74.7 152 32.9
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 2.1e-10 71.2 87 44.8
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 3.7e-10 70.5 140 34.3
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.8e-09 68.2 153 35.3
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 6.9e-09 66.2 139 32.4
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.0e-09 65.9 70 44.3
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.2e-08 65.5 55 63.6
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.9e-08 63.2 70 42.9
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 3.8e-07 60.5 67 44.8
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-06 58.5 67 43.3
BraA01t00060Z Brassica rapa HOM05D004487 ORTHO05D032747 2.5e-06 57.8 116 35.3
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.2e-06 57.4 33 81.8
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.2e-06 57.4 33 81.8
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.3e-06 55.8 97 36.1


User provided reference genes

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