Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 4.4e-164 581.3 300 100.0
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 6.8e-141 504.2 302 88.7
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 1.3e-139 500.0 302 88.7
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 3.2e-138 495.4 302 87.1
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 5.4e-138 494.6 303 87.1
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 3.0e-136 488.8 308 86.7
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.4e-106 390.2 309 73.5
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.0e-88 330.9 308 63.0
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 1.2e-76 290.8 302 62.3
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 2.0e-76 290.0 314 58.6
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 8.8e-72 274.6 315 56.5
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 5.5e-66 255.4 312 54.5
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 5.7e-55 218.8 353 44.8
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 2.7e-44 183.3 307 42.7
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 6.0e-44 182.2 304 42.8
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 2.3e-40 170.2 359 37.3
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 3.1e-40 169.9 347 38.3
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 4.4e-39 166.0 347 38.3
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 3.7e-38 162.9 171 57.3
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 3.7e-38 162.9 357 37.3
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.6e-36 157.5 309 40.1
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 2.3e-35 153.7 332 39.5
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 5.6e-34 149.1 316 38.0
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 9.6e-26 121.7 338 34.0
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 1.2e-23 114.8 267 36.7
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 1.4e-21 107.8 372 29.0
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 3.5e-20 103.2 318 34.0
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 7.3e-18 95.5 221 35.7
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 8.1e-17 92.0 227 34.8
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 2.6e-15 87.0 355 27.3
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 7.6e-15 85.5 378 28.0
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 3.8e-14 83.2 366 25.7
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 1.9e-13 80.9 354 25.4
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.9e-13 80.9 455 23.5
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 5.4e-13 79.3 233 34.8
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 5.4e-13 79.3 458 25.1
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 9.3e-13 78.6 310 29.4
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 2.1e-12 77.4 360 24.7
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 7.9e-12 75.5 72 52.8
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 7.9e-12 75.5 453 24.1
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.3e-11 73.9 468 22.2
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 2.3e-11 73.9 97 45.4
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 2.3e-11 73.9 74 48.6
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 3.0e-11 73.6 79 50.6
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 5.1e-11 72.8 303 24.8
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 5.1e-11 72.8 89 44.9
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 6.7e-11 72.4 302 25.8
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 1.1e-10 71.6 97 44.3
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 1.9e-10 70.9 82 51.2
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 3.3e-10 70.1 75 48.0
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.3e-10 69.7 72 45.8
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 4.3e-10 69.7 107 39.3
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 7.4e-10 68.9 76 46.1
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 7.4e-10 68.9 374 24.1
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 7.4e-10 68.9 171 32.2
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 7.4e-10 68.9 107 39.3
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 7.4e-10 68.9 167 37.1
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 9.6e-10 68.6 83 44.6
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 9.6e-10 68.6 76 48.7
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 1.3e-09 68.2 101 40.6
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.3e-09 68.2 183 30.6
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.6e-09 67.8 452 23.0
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 2.1e-09 67.4 167 32.3
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 2.8e-09 67.0 76 46.1
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 3.6e-09 66.6 89 43.8
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 3.6e-09 66.6 182 34.6
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 4.8e-09 66.2 85 45.9
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 4.8e-09 66.2 84 46.4
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 4.8e-09 66.2 451 23.9
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 4.8e-09 66.2 264 27.7
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 6.2e-09 65.9 93 37.6
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 6.2e-09 65.9 76 43.4
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 6.2e-09 65.9 76 43.4
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 6.2e-09 65.9 73 43.8
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 8.1e-09 65.5 87 47.1
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 8.1e-09 65.5 96 41.7
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 1.1e-08 65.1 84 38.1
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.4e-08 64.7 182 34.1
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 1.4e-08 64.7 65 50.8
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 1.4e-08 64.7 87 40.2
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.8e-08 64.3 107 36.4
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 1.8e-08 64.3 389 26.0
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 2.4e-08 63.9 92 42.4
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 3.1e-08 63.5 97 40.2
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 5.3e-08 62.8 68 48.5
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 9.0e-08 62.0 99 36.4
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 1.2e-07 61.6 93 41.9
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 1.2e-07 61.6 98 38.8
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.5e-07 61.2 76 44.7
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.0e-07 60.8 192 28.6
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 2.6e-07 60.5 171 32.2
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 3.4e-07 60.1 76 44.7
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 4.5e-07 59.7 160 35.6
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 4.5e-07 59.7 87 39.1
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 5.8e-07 59.3 68 45.6
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 7.6e-07 58.9 101 38.6
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 7.6e-07 58.9 197 31.0
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 9.9e-07 58.5 75 45.3
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 9.9e-07 58.5 67 43.3
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 2.2e-06 57.4 65 44.6
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 2.2e-06 57.4 308 25.0
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 2.2e-06 57.4 197 31.0
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.8e-06 56.6 65 43.1
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 4.9e-06 56.2 70 42.9
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 6.4e-06 55.8 91 37.4
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 6.4e-06 55.8 72 41.7
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 8.4e-06 55.5 65 44.6


User provided reference genes

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