Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 5.7e-264 913.7 458 100.0
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 2.7e-253 878.2 458 95.9
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 2.7e-253 878.2 458 95.9
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 2.3e-252 875.2 456 95.8
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 1.5e-251 872.5 456 95.4
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 1.5e-251 872.5 456 95.4
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 2.8e-234 815.1 458 88.9
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 1.7e-223 779.2 458 85.6
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 3.9e-220 768.1 458 84.9
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 1.2e-216 756.5 438 85.6
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 1.3e-202 709.9 458 77.5
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 8.4e-199 697.2 386 87.3
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 1.3e-178 630.2 438 72.6
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 1.4e-174 616.7 352 86.1
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 9.1e-153 544.3 445 61.1
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.0e-148 530.8 451 59.9
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 2.6e-147 526.2 452 59.5
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 2.8e-146 522.7 441 60.3
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.7e-146 522.3 452 59.3
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 2.0e-144 516.5 466 57.9
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.7e-144 516.2 453 58.1
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 3.8e-143 512.3 443 58.9
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 5.0e-143 511.9 436 59.2
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 6.5e-143 511.5 439 59.2
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 8.6e-143 511.1 440 58.6
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 1.1e-142 510.8 436 59.2
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 8.8e-140 501.1 421 60.8
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 2.0e-139 500.0 478 56.5
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 2.6e-139 499.6 438 60.0
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 9.8e-139 497.7 433 58.2
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 1.7e-138 496.9 464 56.9
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 4.9e-138 495.4 455 57.8
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 8.3e-138 494.6 444 58.3
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 1.4e-137 493.8 430 56.0
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 3.1e-137 492.7 436 57.1
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.2e-137 491.1 438 58.0
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 2.7e-136 489.6 433 58.0
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 7.8e-136 488.0 453 57.2
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.9e-134 483.4 436 55.0
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.9e-134 483.4 436 55.0
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.6e-134 481.9 436 55.0
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 1.6e-133 480.3 441 56.5
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 6.1e-133 478.4 443 56.9
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 6.8e-132 474.9 440 57.3
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 2.6e-131 473.0 419 58.0
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 2.6e-131 473.0 421 55.8
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 7.5e-131 471.5 438 54.3
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.3e-130 470.7 433 56.4
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 2.9e-130 469.5 435 55.9
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 3.7e-130 469.2 443 56.2
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 3.7e-130 469.2 471 53.7
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 3.7e-130 469.2 452 54.2
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 3.7e-130 469.2 437 56.5
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 4.9e-130 468.8 460 55.4
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 6.4e-130 468.4 480 54.4
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 4.1e-129 465.7 378 60.6
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 9.2e-129 464.5 424 55.4
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 1.6e-128 463.8 455 54.1
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.3e-127 460.7 428 55.1
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 3.0e-127 459.5 446 55.6
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 3.9e-127 459.1 420 54.8
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 2.5e-126 456.4 445 54.8
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 3.6e-125 452.6 424 54.7
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 8.0e-125 451.4 518 48.3
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 6.8e-124 448.4 497 50.5
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.5e-123 447.2 380 58.9
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 2.7e-120 436.4 385 57.1
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 7.8e-120 434.9 434 50.9
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 5.0e-119 432.2 385 56.1
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 1.5e-118 430.6 381 57.5
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 4.3e-118 429.1 430 52.1
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 3.6e-117 426.0 387 56.8
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 3.6e-117 426.0 480 50.0
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 6.2e-117 425.2 440 50.5
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.8e-116 423.7 426 52.1
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 7.5e-115 418.3 437 52.9
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 2.9e-114 416.4 433 50.3
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 6.4e-114 415.2 459 51.4
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 1.1e-113 414.5 380 55.8
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 1.1e-113 414.5 442 48.4
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 2.1e-112 410.2 444 52.3
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 4.6e-112 409.1 383 53.5
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 6.0e-112 408.7 442 49.5
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 7.8e-112 408.3 380 55.5
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 2.1e-109 400.2 381 53.3
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 8.9e-108 394.8 374 52.4
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 5.8e-107 392.1 379 53.8
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 2.3e-103 380.2 430 45.3
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 6.6e-103 378.6 326 57.4
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 8.7e-103 378.3 406 50.5
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 3.6e-101 372.9 506 42.3
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 9.9e-99 364.8 379 49.1
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 1.4e-97 360.9 438 45.7
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 4.2e-97 359.4 461 44.9
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 4.2e-97 359.4 426 47.4
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 5.4e-97 359.0 442 45.5
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.6e-96 357.5 426 48.4
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 3.0e-95 353.2 442 45.7
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 4.3e-94 349.4 463 45.6
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 1.8e-92 344.0 445 43.4
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 3.4e-91 339.7 455 42.9
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 3.4e-91 339.7 455 42.9
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 7.6e-91 338.6 343 53.6
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.7e-90 337.4 469 43.7
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 3.5e-88 329.7 294 55.4
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 4.6e-88 329.3 464 43.5
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 6.0e-88 328.9 426 41.5
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 7.9e-88 328.6 438 43.4
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.9e-86 323.9 463 38.9
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 5.3e-84 315.8 447 41.8
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 6.9e-84 315.5 428 45.3
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 9.0e-84 315.1 445 43.1
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 5.8e-83 312.4 388 45.6
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.9e-82 310.1 445 42.7
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.9e-81 307.4 475 41.7
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 4.2e-81 306.2 397 43.8
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 9.3e-81 305.1 474 38.2
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.1e-80 303.9 480 37.7
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 4.5e-75 286.2 349 46.1
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 2.2e-69 267.3 273 52.7
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.2e-64 251.5 431 35.7
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 3.6e-64 250.0 396 36.9
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 9.1e-52 208.8 278 41.7
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 2.2e-50 204.1 416 31.7
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.0e-23 115.5 138 45.7
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 6.8e-23 112.8 147 42.9
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 6.0e-11 73.2 107 41.1
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 1.0e-10 72.4 64 64.1
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 1.8e-07 61.6 80 57.5
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 7.5e-06 56.2 57 59.6
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 7.5e-06 56.2 45 60.0


User provided reference genes

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