Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.4e-99 366.3 183 100.0
BcaC05g27867 Brassica carinata HOM05D025437 ORTHO05D016590 2.6e-42 176.0 95 88.4
C05p38690 Brassica napus HOM05D025437 ORTHO05D016590 2.6e-42 176.0 95 88.4
C01p36490 Brassica napus HOM05D025437 ORTHO05D016590 2.2e-41 172.9 95 87.4
C08p18570 Brassica napus HOM05D025437 ORTHO05D016590 3.8e-41 172.2 95 87.4
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 3.0e-38 162.5 99 84.8
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 3.0e-38 162.5 99 84.8
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 3.9e-38 162.2 88 93.2
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 6.6e-38 161.4 88 93.2
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.9e-37 159.8 88 92.0
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.5e-31 139.0 107 71.0
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 3.9e-30 135.6 97 72.2
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.1e-30 135.2 89 77.5
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 3.1e-27 125.9 99 66.7
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.2e-26 124.0 108 61.1
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 5.8e-26 121.7 102 63.7
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 3.3e-21 105.9 88 63.6
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 3.3e-21 105.9 88 63.6
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 4.3e-21 105.5 88 63.6
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 4.3e-21 105.5 88 63.6
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 5.6e-21 105.1 88 63.6
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 9.6e-21 104.4 89 62.9
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.1e-20 103.2 88 61.4
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.1e-20 103.2 88 61.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.1e-20 103.2 88 60.2
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 6.2e-20 101.7 88 60.2
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 8.2e-20 101.3 100 59.0
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.0e-19 99.0 89 62.9
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.2e-17 93.2 102 54.9
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 7.1e-16 88.2 93 50.5
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 9.3e-16 87.8 90 57.8
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.1e-15 86.7 89 49.4
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.7e-15 86.3 99 47.5
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 3.5e-15 85.9 100 47.0
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 3.5e-15 85.9 90 46.7
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 6.0e-15 85.1 90 46.7
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 6.0e-15 85.1 98 46.9
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.3e-14 84.0 94 46.8
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.8e-14 83.6 96 43.8
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 5.1e-14 82.0 96 42.7
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 8.7e-14 81.3 100 45.0
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 8.7e-14 81.3 100 45.0
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 8.7e-14 81.3 88 47.7
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.5e-13 80.5 96 42.7
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.5e-13 80.5 94 43.6
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.9e-13 80.1 110 42.7
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.9e-13 80.1 99 43.4
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 2.5e-13 79.7 99 43.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 2.5e-13 79.7 89 42.7
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.5e-13 79.7 96 41.7
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.3e-13 79.3 97 42.3
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 5.7e-13 78.6 98 43.9
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 7.4e-13 78.2 107 39.3
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 9.7e-13 77.8 96 46.9
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.3e-12 77.4 88 40.9
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.3e-12 77.4 92 43.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.2e-12 76.6 92 43.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.8e-12 76.3 92 42.4
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 4.8e-12 75.5 98 38.8
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.3e-12 75.1 97 42.3
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.3e-12 75.1 97 42.3
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.3e-12 75.1 97 42.3
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 8.2e-12 74.7 103 40.8
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.1e-11 74.3 98 43.9
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.4e-11 73.9 95 43.2
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.8e-11 73.6 97 43.3
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 4.1e-11 72.4 96 41.7
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.1e-11 72.4 97 47.4
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 5.3e-11 72.0 110 37.3
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 5.3e-11 72.0 93 41.9
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 6.9e-11 71.6 92 42.4
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 6.9e-11 71.6 97 45.4
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 9.0e-11 71.2 92 42.4
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.2e-10 70.9 99 43.4
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.4e-10 69.3 99 42.4
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 5.9e-10 68.6 98 40.8
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 5.9e-10 68.6 96 35.4
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 5.9e-10 68.6 77 42.9
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 5.9e-10 68.6 77 42.9
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.7e-10 68.2 97 43.3
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.0e-09 67.8 96 39.6
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.0e-09 67.8 96 43.8
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.0e-09 67.8 96 43.8
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.3e-09 67.4 103 38.8
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.7e-09 67.0 90 38.9
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.7e-09 67.0 90 38.9
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.7e-09 67.0 95 42.1
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.2e-09 66.6 100 37.0
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.2e-09 66.6 102 43.1
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 2.2e-09 66.6 97 39.2
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.2e-09 66.6 98 40.8
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 5.0e-09 65.5 89 37.1
AT3G14780 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 8.5e-09 64.7 102 35.3
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.4e-08 63.9 111 36.9
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.9e-08 63.5 102 35.3
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 2.5e-08 63.2 96 34.4
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 2.5e-08 63.2 96 36.5
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 3.2e-08 62.8 99 38.4
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 3.2e-08 62.8 94 33.0
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 4.2e-08 62.4 99 39.4
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 4.2e-08 62.4 99 39.4
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 4.2e-08 62.4 106 35.8
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 4.2e-08 62.4 114 36.0
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 4.2e-08 62.4 74 43.2
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 5.5e-08 62.0 61 49.2
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 7.2e-08 61.6 95 36.8
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.2e-08 61.6 94 39.4
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 9.4e-08 61.2 93 43.0
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.2e-07 60.8 99 40.4
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 1.6e-07 60.5 92 35.9
AL3G27090 Arabidopsis lyrata HOM05D000230 ORTHO05D016590 2.1e-07 60.1 107 34.6
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.1e-07 60.1 83 41.0
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 2.1e-07 60.1 93 37.6
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.7e-07 59.7 100 35.0
AL1G18540 Arabidopsis lyrata HOM05D013448 ORTHO05D021414 2.7e-07 59.7 95 32.6
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 3.6e-07 59.3 85 35.3
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 6.1e-07 58.5 104 34.6
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 7.9e-07 58.2 96 39.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 7.9e-07 58.2 77 37.7
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 1.0e-06 57.8 93 35.5
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.4e-06 57.4 95 41.1
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.8e-06 57.0 78 39.7
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.8e-06 57.0 99 39.4
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.3e-06 56.6 107 37.4
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.3e-06 56.6 46 45.7
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.3e-06 56.6 118 33.1
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 2.3e-06 56.6 106 29.2
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.0e-06 56.2 104 34.6
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 3.0e-06 56.2 89 39.3
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.9e-06 55.8 104 34.6
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 5.1e-06 55.5 41 58.5
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 5.1e-06 55.5 102 35.3
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 6.7e-06 55.1 39 51.3


User provided reference genes

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