Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26953 Brassica carinata HOM05D000389 ORTHO05D091758 7.5e-74 280.4 140 100.0
BcaC04g23973 Brassica carinata HOM05D000389 ORTHO05D000287 2.2e-25 119.4 63 84.1
C09p02820 Brassica napus HOM05D000389 ORTHO05D000287 2.2e-25 119.4 63 84.1
A09p02750 Brassica napus HOM05D000389 ORTHO05D000287 3.8e-25 118.6 63 84.1
BraA09t35917Z Brassica rapa HOM05D000389 ORTHO05D000287 3.8e-25 118.6 63 84.1
BcaB01g01949 Brassica carinata HOM05D000389 ORTHO05D000287 1.4e-24 116.7 64 85.9
BolC9t53208H Brassica oleracea HOM05D000389 ORTHO05D000287 4.2e-24 115.2 63 81.0
Sp6g03470 Schrenkiella parvula HOM05D000389 ORTHO05D000287 4.2e-24 115.2 63 82.5
CARHR251810 Cardamine hirsuta HOM05D000389 ORTHO05D000287 5.5e-24 114.8 63 81.0
Carub.0006s3365 Capsella rubella HOM05D000389 ORTHO05D000287 7.9e-23 110.9 63 79.4
AL6G49480 Arabidopsis lyrata HOM05D000389 ORTHO05D000287 1.0e-22 110.5 63 79.4
AT4G03415 Arabidopsis thaliana HOM05D000389 ORTHO05D000287 1.0e-22 110.5 63 79.4
Thhalv10028637m.g Eutrema salsugineum HOM05D000389 ORTHO05D000287 8.7e-22 107.5 63 76.2
Aa31LG5G2870 Aethionema arabicum HOM05D000389 ORTHO05D000287 1.4e-19 100.1 63 69.8
THA.LOC104826028 Tarenaya hassleriana HOM05D000389 ORTHO05D000287 1.2e-18 97.1 65 69.2
Potri.019G103100 Populus trichocarpa HOM05D000389 ORTHO05D000287 1.3e-17 93.6 65 63.1
THA.LOC104801182 Tarenaya hassleriana HOM05D000389 ORTHO05D000287 1.3e-17 93.6 64 68.8
Manes.13G149200 Manihot esculenta HOM05D000389 ORTHO05D000287 3.8e-17 92.0 65 66.2
Atru.chr6.3035 Acer truncatum HOM05D000389 ORTHO05D000287 4.9e-17 91.7 65 61.5
Sabra19G0113900 Salix brachista HOM05D000389 ORTHO05D000287 1.4e-16 90.1 65 63.1
Sabra13G0116100 Salix brachista HOM05D000389 ORTHO05D000287 2.5e-16 89.4 65 61.5
Glyma.12G109500 Glycine max HOM05D000389 ORTHO05D000287 4.2e-16 88.6 65 60.0
Prupe.3G235000 Prunus persica HOM05D000389 ORTHO05D000287 4.2e-16 88.6 65 61.5
arahy.Tifrunner.gnm1.ann1.2DJ75K Arachis hypogaea HOM05D000389 ORTHO05D000287 1.6e-15 86.7 65 58.5
arahy.Tifrunner.gnm1.ann1.P2QV17 Arachis hypogaea HOM05D000389 ORTHO05D000287 1.6e-15 86.7 65 58.5
Thhalv10007577m.g Eutrema salsugineum HOM05D000389 ORTHO05D000287 1.6e-15 86.7 60 61.7
Thecc.02G175600 Theobroma cacao HOM05D000389 ORTHO05D000287 1.6e-15 86.7 64 59.4
AL1G13090 Arabidopsis lyrata HOM05D000389 ORTHO05D000287 2.7e-15 85.9 60 65.0
VMungo1080G1582 Vigna mungo HOM05D000389 ORTHO05D000287 2.7e-15 85.9 65 61.5
Glyma.06G296200 Glycine max HOM05D000389 ORTHO05D000287 3.5e-15 85.5 65 56.9
Gohir.D02G181600 Gossypium hirsutum HOM05D000389 ORTHO05D000287 4.6e-15 85.1 53 66.0
Lalb_Chr01g0005361 Lupinus albus HOM05D000389 ORTHO05D000287 4.6e-15 85.1 66 60.6
TWI36G0761 Tripterygium wilfordii HOM05D000389 ORTHO05D000287 4.6e-15 85.1 65 56.9
AT1G03590 Arabidopsis thaliana HOM05D000389 ORTHO05D000287 6.0e-15 84.7 60 63.3
EL10Ac9g20688 Beta vulgaris HOM05D000389 ORTHO05D000287 7.9e-15 84.3 63 60.3
Gorai.005G204100 Gossypium raimondii HOM05D000389 ORTHO05D000287 7.9e-15 84.3 50 70.0
Actinidia39306 Actinidia chinensis HOM05D000389 ORTHO05D000287 1.3e-14 83.6 65 58.5
Glyma.13G299300 Glycine max HOM05D000389 ORTHO05D000287 1.3e-14 83.6 63 61.9
PGR142G2560 Punica granatum HOM05D000389 ORTHO05D000287 1.3e-14 83.6 65 60.0
GSVIVG01030553001 Vitis vinifera HOM05D000389 ORTHO05D000287 1.3e-14 83.6 65 58.5
Lalb_Chr14g0366751 Lupinus albus HOM05D000389 ORTHO05D000287 1.8e-14 83.2 63 60.3
MD09G1090600 Malus domestica HOM05D000389 ORTHO05D000287 1.8e-14 83.2 65 58.5
CARHR002930 Cardamine hirsuta HOM05D000389 ORTHO05D000287 2.3e-14 82.8 60 61.7
Glyma.12G202400 Glycine max HOM05D000389 ORTHO05D000287 2.3e-14 82.8 65 60.0
Gohir.A03G158400 Gossypium hirsutum HOM05D000389 ORTHO05D000287 2.3e-14 82.8 50 68.0
Ah.01g005260 Amaranthus hybridus HOM05D000389 ORTHO05D000287 3.0e-14 82.4 65 60.0
arahy.Tifrunner.gnm1.ann1.5P1FU9 Arachis hypogaea HOM05D000389 ORTHO05D000287 3.0e-14 82.4 65 58.5
arahy.Tifrunner.gnm1.ann1.VA11TJ Arachis hypogaea HOM05D000389 ORTHO05D000287 3.0e-14 82.4 65 58.5
Cfa014567 Carpinus fangiana HOM05D000389 ORTHO05D000287 3.0e-14 82.4 65 58.5
Haze_13116 Corylus avellana HOM05D000389 ORTHO05D000287 3.0e-14 82.4 65 58.5
MELO3C018749.2 Cucumis melo HOM05D000389 ORTHO05D000287 3.0e-14 82.4 65 58.5
CsaV3_7G004290 Cucumis sativus L. HOM05D000389 ORTHO05D000287 3.0e-14 82.4 65 58.5
Ca_05302_v3 Cicer arietinum L. HOM05D000389 ORTHO05D000287 3.9e-14 82.0 63 57.1
COL.COLO4_35405 Corchorus olitorius HOM05D000389 ORTHO05D000287 3.9e-14 82.0 64 56.2
Duzib248G0901 Durio zibethinus HOM05D000389 ORTHO05D000287 3.9e-14 82.0 64 59.4
Actinidia30481 Actinidia chinensis HOM05D000389 ORTHO05D000287 5.1e-14 81.6 65 56.9
Ciclev10015132m.g Citrus clementina HOM05D000389 ORTHO05D000287 5.1e-14 81.6 65 53.8
VMungo1127G1318 Vigna mungo HOM05D000389 ORTHO05D000287 6.7e-14 81.3 65 55.4
Carub.0001s0271 Capsella rubella HOM05D000389 ORTHO05D000287 8.7e-14 80.9 60 61.7
AUR62042678 Chenopodium quinoa HOM05D000389 ORTHO05D000287 8.7e-14 80.9 63 58.7
Gohir.A04G105000 Gossypium hirsutum HOM05D000389 ORTHO05D000287 8.7e-14 80.9 50 66.0
Gohir.D04G144800 Gossypium hirsutum HOM05D000389 ORTHO05D000287 8.7e-14 80.9 50 66.0
Gorai.012G130800 Gossypium raimondii HOM05D000389 ORTHO05D000287 8.7e-14 80.9 50 66.0
Phvul.011G113300 Phaseolus vulgaris HOM05D000389 ORTHO05D000287 8.7e-14 80.9 65 55.4
Sopen10g004310 Solanum pennellii HOM05D000389 ORTHO05D000287 8.7e-14 80.9 65 55.4
PGSC0003DMG400021678 Solanum tuberosum HOM05D000389 ORTHO05D000287 8.7e-14 80.9 65 55.4
BolC5t28980H Brassica oleracea HOM05D000389 ORTHO05D000287 1.5e-13 80.1 60 60.0
ClCG02G001150 Citrullus lanatus HOM05D000389 ORTHO05D000287 1.5e-13 80.1 65 56.9
Sp1g02500 Schrenkiella parvula HOM05D000389 ORTHO05D000287 1.5e-13 80.1 60 60.0
BcaC05g24520 Brassica carinata HOM05D000389 ORTHO05D000287 1.9e-13 79.7 60 60.0
C05p02020 Brassica napus HOM05D000389 ORTHO05D000287 1.9e-13 79.7 60 60.0
CAN.G168.35 Capsicum annuum HOM05D000389 ORTHO05D000287 1.9e-13 79.7 65 56.9
Solyc10g008490.3 Solanum lycopersicum HOM05D000389 ORTHO05D000287 1.9e-13 79.7 65 53.8
BcaB02g06916 Brassica carinata HOM05D000389 ORTHO05D000287 2.5e-13 79.3 60 58.3
A08p37310 Brassica napus HOM05D000389 ORTHO05D000287 2.5e-13 79.3 60 58.3
AUR62037352 Chenopodium quinoa HOM05D000389 ORTHO05D000287 2.5e-13 79.3 52 67.3
Phvul.005G106100 Phaseolus vulgaris HOM05D000389 ORTHO05D000287 2.5e-13 79.3 64 59.4
CSS0020283 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 3.3e-13 79.0 65 53.8
CSS0039272 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 3.3e-13 79.0 65 53.8
Lj8C115G8 Lonicera japonica HOM05D000389 ORTHO05D000287 3.3e-13 79.0 64 57.8
Hund08018 Selenicereus undatus HOM05D000389 ORTHO05D000287 3.3e-13 79.0 65 60.0
Psat0s3526g0080 Pisum sativum HOM05D000389 ORTHO05D000287 4.3e-13 78.6 63 54.0
CSS0014717 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 5.7e-13 78.2 57 59.6
CANSAT64G2401 Cannabis sativa HOM05D000389 ORTHO05D000287 5.7e-13 78.2 64 56.2
Lj3g0021580 Lotus japonicus HOM05D000389 ORTHO05D000287 5.7e-13 78.2 66 54.5
Medtr2g090190 Medicago truncatula HOM05D000389 ORTHO05D000287 7.4e-13 77.8 52 65.4
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 9.6e-13 77.4 56 66.1
BcaC07g36954 Brassica carinata HOM05D000389 ORTHO05D000287 1.3e-12 77.0 60 56.7
C08p00690 Brassica napus HOM05D000389 ORTHO05D000287 1.3e-12 77.0 60 56.7
Lalb_Chr03g0029251 Lupinus albus HOM05D000389 ORTHO05D000287 1.3e-12 77.0 66 54.5
RcHm_v2.0_Chr2g0162371 Rosa chinensis HOM05D000389 ORTHO05D000287 1.3e-12 77.0 65 56.9
vmacro12273 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 1.3e-12 77.0 64 54.7
Psat5g270760 Pisum sativum HOM05D000389 ORTHO05D000287 1.6e-12 76.6 64 53.1
QL08p037803 Quercus lobata HOM05D000389 ORTHO05D000287 1.6e-12 76.6 47 68.1
TWI75G0129 Tripterygium wilfordii HOM05D000389 ORTHO05D000287 1.6e-12 76.6 65 52.3
CiPaw.03G173100 Carya illinoinensis HOM05D000389 ORTHO05D000287 2.1e-12 76.3 65 52.3
Sc12g0002820 Simmondsia chinensis HOM05D000389 ORTHO05D000287 2.1e-12 76.3 65 55.4
A10p02110 Brassica napus HOM05D000389 ORTHO05D000287 2.8e-12 75.9 55 63.6
BolC8t46867H Brassica oleracea HOM05D000389 ORTHO05D000287 2.8e-12 75.9 60 56.7
BraA10t42480Z Brassica rapa HOM05D000389 ORTHO05D000287 2.8e-12 75.9 55 63.6
Duzib132G0919 Durio zibethinus HOM05D000389 ORTHO05D000287 2.8e-12 75.9 50 64.0
Aqoxy1G02626 Aquilegia oxysepala HOM05D000389 ORTHO05D000287 3.7e-12 75.5 51 58.8
BraA08t35628Z Brassica rapa HOM05D000389 ORTHO05D000287 3.7e-12 75.5 55 61.8
ECA246G3935 Erigeron canadensis HOM05D000389 ORTHO05D000287 3.7e-12 75.5 48 68.8
Sed0017965 Sechium edule HOM05D000389 ORTHO05D000287 3.7e-12 75.5 65 56.9
Rhsim06G0148600 Rhododendron simsii HOM05D000389 ORTHO05D000287 6.3e-12 74.7 52 61.5
Nitab4.5_0001090g0120 Nicotiana tabacum HOM05D000389 ORTHO05D000287 8.2e-12 74.3 65 53.8
SalBow1G3639 Salvia bowleyana HOM05D000389 ORTHO05D000287 8.2e-12 74.3 65 55.4
TAR626G0252 Trochodendron aralioides HOM05D000389 ORTHO05D000287 8.2e-12 74.3 64 51.6
Duzib052G0079 Durio zibethinus HOM05D000389 ORTHO05D000287 1.1e-11 73.9 64 56.2
Migut.H01054 Erythranthe guttata HOM05D000389 ORTHO05D000287 1.1e-11 73.9 65 53.8
Eucgr.K00946 Eucalyptus grandis HOM05D000389 ORTHO05D000287 1.4e-11 73.6 63 50.8
Solyc07g054300.3 Solanum lycopersicum HOM05D000389 ORTHO05D000287 1.8e-11 73.2 65 52.3
Sopen07g028250 Solanum pennellii HOM05D000389 ORTHO05D000287 1.8e-11 73.2 65 52.3
ClCG02G017450 Citrullus lanatus HOM05D000389 ORTHO05D000287 3.1e-11 72.4 52 61.5
Hma1.2p1_0213F.1_g090410 Hydrangea macrophylla HOM05D000389 ORTHO05D000287 3.1e-11 72.4 51 58.8
Hma1.2p1_0875F.1_g231420 Hydrangea macrophylla HOM05D000389 ORTHO05D000287 3.1e-11 72.4 65 53.8
Ah.01g005270 Amaranthus hybridus HOM05D000389 ORTHO05D000287 4.1e-11 72.0 47 68.1
Nitab4.5_0000635g0070 Nicotiana tabacum HOM05D000389 ORTHO05D000287 4.1e-11 72.0 65 53.8
Oeu058387.1 Olea europaea HOM05D000389 ORTHO05D000287 4.1e-11 72.0 65 53.8
PGSC0003DMG400018314 Solanum tuberosum HOM05D000389 ORTHO05D000287 4.1e-11 72.0 65 50.8
CiPaw.04G123800 Carya illinoinensis HOM05D000389 ORTHO05D000287 5.3e-11 71.6 47 66.0
Cc05_g06740 Coffea canephora HOM05D000389 ORTHO05D000287 5.3e-11 71.6 65 53.8
FAN05G0690 Fragaria x ananassa HOM05D000389 ORTHO05D000287 5.3e-11 71.6 65 55.4
MD17G1079800 Malus domestica HOM05D000389 ORTHO05D000287 5.3e-11 71.6 52 61.5
FvH4_6g45040 Fragaria vesca HOM05D000389 ORTHO05D000287 6.9e-11 71.2 65 53.8
FAN14G1610 Fragaria x ananassa HOM05D000389 ORTHO05D000287 6.9e-11 71.2 65 53.8
FAN02G0898 Fragaria x ananassa HOM05D000389 ORTHO05D000287 9.0e-11 70.9 65 53.8
Medtr4g037470 Medicago truncatula HOM05D000389 ORTHO05D000287 9.0e-11 70.9 47 63.8
Ca_01514_v3 Cicer arietinum L. HOM05D000389 ORTHO05D000287 1.2e-10 70.5 50 60.0
Lsat_1_v5_gn_8_132220 Lactuca sativa HOM05D000389 ORTHO05D000287 1.2e-10 70.5 63 50.8
vmacro09273 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 1.2e-10 70.5 45 66.7
Lj3g0008488 Lotus japonicus HOM05D000389 ORTHO05D000287 1.5e-10 70.1 65 55.4
Peaxi162Scf00132g00719 Petunia axillaris HOM05D000389 ORTHO05D000287 1.5e-10 70.1 65 50.8
Nitab4.5_0000998g0050 Nicotiana tabacum HOM05D000389 ORTHO05D000287 2.0e-10 69.7 65 52.3
TAR141G0002 Trochodendron aralioides HOM05D000389 ORTHO05D000287 2.0e-10 69.7 51 58.8
DCAR_023671 Daucus carota HOM05D000389 ORTHO05D000287 5.9e-10 68.2 65 53.8
FAN09G4640 Fragaria x ananassa HOM05D000389 ORTHO05D000287 5.9e-10 68.2 65 52.3
Sed0026951 Sechium edule HOM05D000389 ORTHO05D000287 5.9e-10 68.2 49 59.2
Actinidia09876 Actinidia chinensis HOM05D000389 ORTHO05D000287 7.6e-10 67.8 48 56.2
CAN.G248.48 Capsicum annuum HOM05D000389 ORTHO05D000287 7.6e-10 67.8 65 49.2
HanXRQChr17g0542581 Helianthus annuus HOM05D000389 ORTHO05D000287 7.6e-10 67.8 44 65.9
Nitab4.5_0005380g0040 Nicotiana tabacum HOM05D000389 ORTHO05D000287 1.3e-09 67.0 61 52.5
Actinidia11068 Actinidia chinensis HOM05D000389 ORTHO05D000287 1.7e-09 66.6 48 56.2
Lj1C733T6 Lonicera japonica HOM05D000389 ORTHO05D000287 1.7e-09 66.6 60 48.3
Peaxi162Scf01258g00120 Petunia axillaris HOM05D000389 ORTHO05D000287 2.2e-09 66.2 65 49.2
SGA_v2.0_scaffold109G31097 Striga asiatica HOM05D000389 ORTHO05D000287 5.0e-09 65.1 65 49.2
PSO675G4628 Papaver somniferum HOM05D000389 ORTHO05D000287 1.1e-08 63.9 44 63.6
Rhsim04G0066700 Rhododendron simsii HOM05D000389 ORTHO05D000287 1.4e-08 63.5 43 58.1
Hund08015 Selenicereus undatus HOM05D000389 ORTHO05D000287 1.4e-08 63.5 45 55.6
Lsat_1_v5_gn_3_39461 Lactuca sativa HOM05D000389 ORTHO05D000287 2.5e-08 62.8 48 58.3
MBI02_g19255_MAGBIO Magnolia biondii HOM05D000389 ORTHO05D000287 3.2e-08 62.4 44 54.5
Sed0003383 Sechium edule HOM05D000389 ORTHO05D000287 4.2e-08 62.0 41 63.4
Lalb_Chr22g0356471 Lupinus albus HOM05D000389 ORTHO05D000287 7.2e-08 61.2 50 56.0
PSO541G2726 Papaver somniferum HOM05D000389 ORTHO05D000287 9.3e-08 60.8 44 59.1
HanXRQChr17g0553371 Helianthus annuus HOM05D000389 ORTHO05D000287 1.2e-07 60.5 58 48.3


User provided reference genes

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