Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1772.3 864 100.0
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1684.1 864 94.6
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1682.5 864 94.4
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1681.0 864 94.3
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1663.3 866 93.9
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1659.0 866 93.8
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1610.5 864 91.0
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1585.5 868 88.1
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1507.7 863 84.7
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1503.8 863 84.2
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1501.1 862 84.3
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1443.3 862 80.0
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1434.1 861 81.4
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1295.0 862 72.2
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1277.3 863 70.9
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1276.2 863 70.1
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1270.8 864 70.7
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 864 70.0
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1265.8 867 69.9
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1265.0 864 69.8
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1264.6 864 69.8
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1261.5 867 69.8
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 868 69.2
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 864 68.6
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1243.8 869 68.8
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1243.0 864 68.6
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1242.3 867 69.0
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 867 68.4
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1238.0 866 68.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 0.0e+00 1236.9 690 86.1
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1232.2 876 67.2
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1229.5 865 68.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 869 68.0
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 862 68.4
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1225.7 869 67.7
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1224.9 871 67.7
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 864 68.4
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 864 67.6
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1221.1 865 67.9
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1220.3 865 68.7
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1218.8 869 67.1
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 864 67.5
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1217.2 866 67.8
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1215.3 864 67.7
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 870 67.4
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1213.4 865 67.7
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 876 67.2
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 865 67.9
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1211.1 865 67.5
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 865 66.2
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1206.0 864 67.1
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1205.7 862 66.4
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1204.1 862 67.1
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1200.7 862 67.7
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1200.3 859 67.5
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1198.0 859 66.5
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1197.6 865 66.6
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1196.8 864 67.1
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1195.6 872 65.8
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1193.7 859 66.6
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 864 66.7
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 865 66.4
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1192.2 887 65.1
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1190.6 869 67.5
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1189.9 865 66.7
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1189.9 865 66.4
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1188.7 865 66.8
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1186.4 865 66.5
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1186.0 871 66.0
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1184.9 868 66.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1182.9 861 65.7
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1179.5 875 65.8
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1178.3 863 66.2
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1177.2 863 66.4
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1177.2 865 66.1
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1176.4 882 65.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1174.8 878 64.4
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1174.1 863 65.9
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1170.2 868 65.3
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1170.2 865 66.0
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1165.2 866 65.2
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1156.7 863 64.9
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1154.4 874 63.7
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1152.9 870 64.1
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1151.7 869 64.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1151.3 860 64.7
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1141.3 864 63.0
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1117.8 864 64.0
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1103.2 867 62.2
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1094.3 824 64.9
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1077.0 847 63.2
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 2.5e-308 1062.0 747 68.9
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 4.2e-300 1034.6 862 61.0
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.0e-298 1028.5 646 74.5
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.9e-297 1025.8 861 57.5
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 6.3e-296 1020.8 691 69.3
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.3e-293 1013.1 859 58.3
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 7.9e-283 977.2 861 54.7
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 9.1e-279 963.8 858 55.8
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 4.7e-275 951.4 865 53.5
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.3e-266 922.5 869 52.0
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 4.6e-206 722.2 778 48.2
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.1e-154 551.6 388 67.5
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 4.4e-148 529.6 474 56.5
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.2e-137 495.0 460 55.9
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.2e-116 425.2 361 59.0
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 7.1e-82 309.7 307 55.4
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.1e-61 242.7 168 67.9
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 1.2e-60 239.2 204 56.9
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.4e-45 189.1 161 59.0
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 2.3e-40 171.8 198 48.5
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 9.7e-39 166.4 169 49.7
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.1e-33 148.7 103 65.0
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 4.8e-30 137.5 149 48.3
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.8e-25 121.7 85 67.1
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-23 116.3 118 52.5
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 3.4e-23 114.8 69 72.5
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 4.4e-23 114.4 86 67.4
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 5.4e-21 107.5 90 61.1
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 3.1e-16 91.7 86 53.5
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.6e-15 88.6 108 49.1
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.7e-14 84.7 322 26.4
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.1e-13 83.2 328 25.9
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.0e-13 80.5 274 25.5
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.5e-12 78.2 317 24.6
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 4.6e-12 77.8 251 25.1
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 6.0e-12 77.4 273 25.6
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.0e-11 74.3 304 26.0
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 5.6e-10 70.9 65 53.8
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 7.3e-10 70.5 302 21.9
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.2e-09 69.7 339 23.6
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.2e-09 69.7 311 22.5
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.7e-09 67.8 299 23.7
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 4.7e-09 67.8 300 25.7
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-08 66.6 96 41.7
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.8e-08 65.9 298 24.2
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.2e-08 64.3 366 19.9
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 2.6e-07 62.0 288 24.0
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 3.4e-07 61.6 309 27.2
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.8e-07 60.8 220 25.0
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.7e-06 59.3 299 24.4
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.2e-06 58.9 32 78.1
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 3.7e-06 58.2 83 38.6
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.9e-06 57.8 173 26.0


User provided reference genes

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