Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 5.3e-169 597.8 349 100.0
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 2.8e-154 548.9 380 83.2
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 2.8e-154 548.9 380 82.6
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 4.8e-154 548.1 380 83.2
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 6.3e-154 547.7 380 80.8
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 6.3e-154 547.7 380 80.8
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.2e-152 543.5 380 80.5
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 4.2e-150 535.0 378 80.2
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 6.1e-149 531.2 372 81.2
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 7.9e-149 530.8 373 79.9
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 3.9e-148 528.5 380 78.9
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 2.8e-146 522.3 380 77.9
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 5.0e-143 511.5 372 78.5
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 5.0e-135 485.0 296 82.8
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.6e-133 479.9 309 79.3
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 2.1e-133 479.6 308 79.9
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 3.6e-133 478.8 316 80.1
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 4.7e-133 478.4 306 80.4
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 1.0e-132 477.2 309 79.6
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 1.0e-132 477.2 315 78.1
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 2.3e-132 476.1 314 77.1
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 1.2e-131 473.8 317 75.7
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 1.2e-131 473.8 327 74.3
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.5e-131 473.4 309 78.0
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 2.6e-131 472.6 309 78.3
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 5.7e-131 471.5 324 75.6
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 7.5e-131 471.1 323 75.2
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 9.8e-131 470.7 309 78.6
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 1.7e-130 469.9 309 79.0
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.7e-130 469.9 307 77.2
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 2.2e-130 469.5 324 75.6
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 4.8e-130 468.4 321 75.4
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 4.8e-130 468.4 310 76.8
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.1e-129 467.2 310 76.5
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.1e-129 467.2 322 74.8
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.4e-129 466.8 328 74.4
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 1.4e-129 466.8 309 76.7
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 1.4e-129 466.8 307 77.9
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.1e-129 465.3 309 76.7
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 7.0e-129 464.5 322 75.2
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 9.1e-129 464.2 309 76.4
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.2e-128 463.8 310 76.1
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.2e-128 463.8 309 76.7
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 2.0e-128 463.0 336 72.6
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.0e-128 463.0 336 72.6
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 2.7e-128 462.6 306 78.4
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 2.7e-128 462.6 328 72.9
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 3.5e-128 462.2 324 74.7
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 3.5e-128 462.2 321 73.8
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.5e-128 461.8 310 76.1
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 5.9e-128 461.5 308 76.3
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 5.9e-128 461.5 309 75.7
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 7.7e-128 461.1 314 75.2
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 7.7e-128 461.1 309 76.7
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 1.0e-127 460.7 322 74.8
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.0e-127 460.7 309 77.0
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 2.2e-127 459.5 325 77.8
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 2.2e-127 459.5 310 75.5
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 3.8e-127 458.8 322 74.2
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 3.8e-127 458.8 322 74.2
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.0e-127 458.4 310 75.5
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 5.0e-127 458.4 320 74.7
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 5.0e-127 458.4 306 76.1
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 8.5e-127 457.6 307 76.2
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 8.5e-127 457.6 306 75.8
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.5e-126 456.8 319 73.7
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.9e-126 456.4 319 73.7
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.9e-126 456.4 319 73.4
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 2.5e-126 456.1 310 76.1
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 4.2e-126 455.3 317 74.8
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 9.5e-126 454.1 309 75.4
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 1.6e-125 453.4 309 74.4
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.6e-125 453.4 319 73.4
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 2.8e-125 452.6 328 74.1
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 3.6e-125 452.2 310 74.2
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 6.1e-125 451.4 308 74.4
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 8.0e-125 451.1 309 75.4
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 1.0e-124 450.7 299 76.3
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.4e-124 450.3 312 74.7
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 1.8e-124 449.9 300 76.3
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 3.0e-124 449.1 307 73.9
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 3.0e-124 449.1 384 66.7
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 4.0e-124 448.7 314 72.3
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 5.2e-124 448.4 315 72.1
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 6.8e-124 448.0 322 72.0
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 8.8e-124 447.6 309 74.4
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 8.8e-124 447.6 323 74.0
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.2e-123 447.2 323 73.1
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 1.5e-123 446.8 309 74.1
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.0e-123 446.4 308 73.4
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 2.0e-123 446.4 312 73.4
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.6e-123 446.0 307 74.6
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 7.5e-123 444.5 308 73.1
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 9.8e-123 444.1 309 73.5
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.7e-122 443.4 314 71.3
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.8e-122 442.6 267 78.7
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 3.7e-122 442.2 317 71.0
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 4.9e-122 441.8 315 72.4
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 4.9e-122 441.8 311 72.3
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.4e-121 439.5 309 73.1
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 2.4e-121 439.5 308 72.7
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 3.1e-121 439.1 323 69.7
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 3.1e-121 439.1 320 69.7
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 5.4e-121 438.3 315 71.1
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 7.0e-121 438.0 327 69.4
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.2e-120 437.2 309 69.9
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.6e-120 436.8 318 70.8
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.0e-120 436.4 298 73.5
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 3.5e-120 435.6 309 70.2
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 7.8e-120 434.5 309 70.2
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 1.0e-119 434.1 309 69.9
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 3.8e-119 432.2 309 69.3
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.5e-118 430.3 324 67.3
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 3.3e-118 429.1 305 71.1
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 2.8e-117 426.0 286 74.8
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 3.6e-117 425.6 311 71.1
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 4.7e-117 425.2 411 58.4
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 6.1e-117 424.9 345 64.1
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 6.1e-117 424.9 301 71.8
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 8.0e-117 424.5 299 70.6
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 5.2e-116 421.8 308 68.8
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 1.2e-115 420.6 322 69.3
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 1.3e-114 417.2 325 68.3
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 4.9e-114 415.2 304 70.4
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 6.4e-114 414.8 314 66.9
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 1.5e-110 403.7 332 64.5
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 4.3e-110 402.1 314 66.2
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 1.2e-109 400.6 269 74.3
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 4.9e-106 388.7 308 66.2
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.9e-105 386.7 268 75.0
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 1.9e-105 386.7 283 69.6
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 1.0e-103 380.9 342 60.5
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.3e-103 379.8 306 65.7
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 9.5e-102 374.4 323 62.8
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 1.1e-100 370.9 302 59.9
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 8.3e-98 361.3 237 75.9
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 1.2e-96 357.5 298 58.7
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 2.3e-95 353.2 320 57.2
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 8.6e-95 351.3 304 57.2
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 9.5e-94 347.8 222 78.8
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.2e-93 347.4 237 73.8
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.1e-92 344.4 310 61.0
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.4e-92 344.0 298 56.0
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.8e-92 343.6 298 57.4
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 1.5e-91 340.5 189 89.4
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.2e-88 330.9 267 65.9
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.0e-87 326.2 329 52.0
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 5.1e-87 325.5 313 56.2
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 4.7e-85 318.9 215 75.3
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 3.5e-80 302.8 212 76.9
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 3.2e-73 279.6 299 49.5
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 3.9e-63 246.1 211 57.3
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 2.8e-53 213.4 180 58.9
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 3.9e-47 193.0 149 68.5
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 9.1e-44 181.8 301 44.5
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 3.0e-39 166.8 175 53.1
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 8.8e-31 138.7 127 57.5
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 8.8e-31 138.7 98 72.4
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 1.2e-24 118.2 65 81.5
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 2.1e-24 117.5 99 59.6
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 7.7e-19 99.0 70 71.4
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 7.7e-19 99.0 70 71.4
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 6.5e-18 95.9 70 70.0
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 4.2e-17 93.2 280 26.8
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 2.7e-16 90.5 67 70.1
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 3.7e-13 80.1 59 67.8
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 8.3e-13 79.0 336 25.0
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 1.6e-11 74.7 35 97.1
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 3.5e-11 73.6 212 31.6
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 7.7e-11 72.4 34 97.1
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 2.5e-09 67.4 34 94.1
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 4.2e-09 66.6 282 23.4
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.0e-07 62.0 380 23.4
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 2.3e-07 60.8 40 67.5


User provided reference genes

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