Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 1.9e-45 185.3 83 100.0
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 2.1e-23 112.1 56 91.1
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-12 76.3 56 67.9
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 2.8e-12 75.1 56 66.1
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 2.8e-12 75.1 56 66.1
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 2.8e-12 75.1 56 66.1
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 2.8e-12 75.1 56 66.1
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 3.7e-12 74.7 56 66.1
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 3.7e-12 74.7 56 66.1
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 4.8e-12 74.3 56 64.3
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 8.3e-12 73.6 56 64.3
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 8.3e-12 73.6 56 66.1
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-11 73.2 56 64.3
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.1e-11 73.2 56 64.3
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-11 73.2 56 64.3
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 1.8e-11 72.4 56 66.1
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 2.4e-11 72.0 56 64.3
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 4.1e-11 71.2 56 64.3
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 4.1e-11 71.2 56 60.7
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 5.4e-11 70.9 56 64.3
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 5.4e-11 70.9 56 64.3
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 7.0e-11 70.5 56 62.5
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 7.0e-11 70.5 56 62.5
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.6e-10 69.3 56 58.9
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 2.0e-10 68.9 54 64.8
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.0e-10 68.9 56 62.5
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.0e-10 68.9 60 56.7
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 3.5e-10 68.2 60 58.3
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.5e-10 68.2 60 56.7
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 7.7e-10 67.0 56 58.9
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 7.7e-10 67.0 60 56.7
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.0e-09 66.6 52 63.5
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 1.0e-09 66.6 58 56.9
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 1.0e-09 66.6 60 55.0
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.3e-09 66.2 54 57.4
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 1.7e-09 65.9 56 55.4
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 1.7e-09 65.9 60 56.7
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.7e-09 65.9 60 56.7
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 2.2e-09 65.5 60 55.0
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 2.2e-09 65.5 60 53.3
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.2e-09 65.5 60 55.0
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 2.9e-09 65.1 60 53.3
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 2.9e-09 65.1 60 53.3
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.9e-09 65.1 60 55.0
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.9e-09 65.1 60 55.0
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 2.9e-09 65.1 60 55.0
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 3.8e-09 64.7 60 58.3
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 5.0e-09 64.3 60 55.0
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 5.0e-09 64.3 60 53.3
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 6.5e-09 63.9 60 51.7
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 6.5e-09 63.9 60 50.0
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 6.5e-09 63.9 60 55.0
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 6.5e-09 63.9 60 55.0
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 8.5e-09 63.5 60 55.0
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 8.5e-09 63.5 60 55.0
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 8.5e-09 63.5 58 56.9
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 8.5e-09 63.5 54 59.3
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 8.5e-09 63.5 60 53.3
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 8.5e-09 63.5 60 53.3
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.1e-08 63.2 56 57.1
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 1.1e-08 63.2 60 53.3
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.1e-08 63.2 54 57.4
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.1e-08 63.2 60 50.0
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.1e-08 63.2 58 55.2
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.5e-08 62.8 60 53.3
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.5e-08 62.8 60 51.7
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.5e-08 62.8 60 53.3
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.5e-08 62.8 60 53.3
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 1.9e-08 62.4 60 53.3
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.9e-08 62.4 60 53.3
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 2.5e-08 62.0 60 51.7
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 2.5e-08 62.0 60 48.3
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.5e-08 62.0 60 53.3
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 2.5e-08 62.0 54 53.7
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 3.2e-08 61.6 56 57.1
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 3.2e-08 61.6 60 53.3
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 3.2e-08 61.6 54 55.6
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 4.2e-08 61.2 60 51.7
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 4.2e-08 61.2 60 50.0
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 7.2e-08 60.5 77 45.5
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 7.2e-08 60.5 60 50.0
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 7.2e-08 60.5 56 55.4
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 9.4e-08 60.1 52 59.6
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 9.4e-08 60.1 54 57.4
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 9.4e-08 60.1 56 53.6
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.2e-07 59.7 60 51.7
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.2e-07 59.7 60 50.0
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 1.2e-07 59.7 60 50.0
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.6e-07 59.3 56 51.8
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.6e-07 59.3 53 56.6
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 2.1e-07 58.9 58 51.7
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 2.1e-07 58.9 60 48.3
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 2.1e-07 58.9 58 56.9
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 2.1e-07 58.9 60 50.0
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.7e-07 58.5 56 51.8
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 2.7e-07 58.5 60 48.3
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 2.7e-07 58.5 60 51.7
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 3.6e-07 58.2 58 51.7
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 3.6e-07 58.2 60 50.0
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 3.6e-07 58.2 60 48.3
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 4.7e-07 57.8 58 50.0
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 4.7e-07 57.8 60 48.3
BcaC08g44126 Brassica carinata HOM05D001692 ORTHO05D003541 6.1e-07 57.4 25 96.0
A05p18190 Brassica napus HOM05D001692 ORTHO05D003541 6.1e-07 57.4 25 96.0
C06p15020 Brassica napus HOM05D001692 ORTHO05D003541 6.1e-07 57.4 25 96.0
BolC6t36679H Brassica oleracea HOM05D001692 ORTHO05D003541 6.1e-07 57.4 25 96.0
BraA05t20712Z Brassica rapa HOM05D001692 ORTHO05D003541 6.1e-07 57.4 25 96.0
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 6.1e-07 57.4 54 55.6
Thhalv10011273m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 1.4e-06 56.2 51 54.9
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.4e-06 56.2 55 47.3
Carub.0001s4280 Capsella rubella HOM05D001692 ORTHO05D003541 1.8e-06 55.8 24 95.8
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 1.8e-06 55.8 54 55.6
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 1.8e-06 55.8 60 48.3
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.8e-06 55.8 56 50.0
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.8e-06 55.8 56 50.0
BcaB02g10911 Brassica carinata HOM05D001692 ORTHO05D003541 2.3e-06 55.5 25 92.0
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 2.3e-06 55.5 58 48.3
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.3e-06 55.5 60 48.3
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.3e-06 55.5 55 47.3
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.3e-06 55.5 60 48.3
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 2.3e-06 55.5 60 48.3
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 5.2e-06 54.3 54 48.1
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 5.2e-06 54.3 50 54.0
Aa31LG8G1800 Aethionema arabicum HOM05D001692 ORTHO05D003541 6.8e-06 53.9 24 91.7
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 6.8e-06 53.9 100 37.0
Aa31LG10G1660 Aethionema arabicum HOM05D001692 ORTHO05D003541 8.8e-06 53.5 24 87.5
AL3G26920 Arabidopsis lyrata HOM05D001692 ORTHO05D003541 8.8e-06 53.5 24 91.7
AT3G14590 Arabidopsis thaliana HOM05D001692 ORTHO05D003541 8.8e-06 53.5 24 91.7
A05p34830 Brassica napus HOM05D001692 ORTHO05D003541 8.8e-06 53.5 24 91.7
BraA05t22295Z Brassica rapa HOM05D001692 ORTHO05D003541 8.8e-06 53.5 24 91.7
Carub.0003s1429 Capsella rubella HOM05D001692 ORTHO05D003541 8.8e-06 53.5 24 91.7
CARHR043850 Cardamine hirsuta HOM05D001692 ORTHO05D003541 8.8e-06 53.5 24 91.7
CARHR089550 Cardamine hirsuta HOM05D001692 ORTHO05D003541 8.8e-06 53.5 24 91.7
Thhalv10020164m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 8.8e-06 53.5 24 91.7
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 8.8e-06 53.5 60 48.3


User provided reference genes

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