Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26858 Brassica carinata HOM05D006983 ORTHO05D008942 8.4e-48 193.4 98 100.0
BcaB02g09071 Brassica carinata HOM05D006983 ORTHO05D008942 2.9e-24 115.2 77 75.3
Thhalv10017044m.g Eutrema salsugineum HOM05D006983 ORTHO05D008942 2.9e-24 115.2 77 72.7
Sp4g22230 Schrenkiella parvula HOM05D006983 ORTHO05D008942 9.7e-20 100.1 77 64.9
AT2G39920 Arabidopsis thaliana HOM05D006983 ORTHO05D008942 1.1e-18 96.7 75 66.7
Carub.0004s2205 Capsella rubella HOM05D006983 ORTHO05D008942 2.6e-17 92.0 83 56.6
A05p06500 Brassica napus HOM05D006983 ORTHO05D008942 3.5e-17 91.7 77 64.9
BraA05t19618Z Brassica rapa HOM05D006983 ORTHO05D008942 3.5e-17 91.7 77 63.6
CARHR134840 Cardamine hirsuta HOM05D006983 ORTHO05D008942 4.5e-17 91.3 77 61.0
AL4G37500 Arabidopsis lyrata HOM05D006983 ORTHO05D008942 5.9e-17 90.9 75 62.7
BcaC02g12125 Brassica carinata HOM05D006983 ORTHO05D008942 1.1e-15 86.7 77 61.0
C04p07590 Brassica napus HOM05D006983 ORTHO05D008942 1.1e-15 86.7 77 61.0
BolC4t22375H Brassica oleracea HOM05D006983 ORTHO05D008942 1.9e-15 85.9 77 61.0
Aa31LG5G19700 Aethionema arabicum HOM05D006983 ORTHO05D008942 5.2e-13 77.8 76 55.3
Cpa.g.sc19.223 Carica papaya HOM05D006983 ORTHO05D008942 1.5e-12 76.3 88 43.2
Duzib114G0863 Durio zibethinus HOM05D006983 ORTHO05D008942 1.3e-11 73.2 93 39.8
Medtr3g070090 Medicago truncatula HOM05D006983 ORTHO05D008942 2.2e-11 72.4 93 39.8
MD07G1213100 Malus domestica HOM05D006983 ORTHO05D008942 2.8e-11 72.0 90 46.7
Lj6g0016213 Lotus japonicus HOM05D006983 ORTHO05D008942 1.1e-10 70.1 96 40.6
TAR623G0945 Trochodendron aralioides HOM05D006983 ORTHO05D008942 1.1e-10 70.1 93 40.9
Thecc.10G027200 Theobroma cacao HOM05D006983 ORTHO05D008942 1.4e-10 69.7 93 40.9
Duzib106G0752 Durio zibethinus HOM05D006983 ORTHO05D008942 1.8e-10 69.3 91 41.8
LjContig00357g0002291 Lotus japonicus HOM05D006983 ORTHO05D008942 2.4e-10 68.9 93 43.0
Phvul.008G227000 Phaseolus vulgaris HOM05D006983 ORTHO05D008942 2.4e-10 68.9 93 43.0
MBI05_g03441_MAGBIO Magnolia biondii HOM05D006983 ORTHO05D008942 3.1e-10 68.6 95 41.1
Glyma.18G030500 Glycine max HOM05D006983 ORTHO05D008942 9.1e-10 67.0 84 40.5
Psat5g127360 Pisum sativum HOM05D006983 ORTHO05D008942 9.1e-10 67.0 81 40.7
Prupe.2G245400 Prunus persica HOM05D006983 ORTHO05D008942 9.1e-10 67.0 91 45.1
GSVIVG01016377001 Vitis vinifera HOM05D006983 ORTHO05D008942 9.1e-10 67.0 91 38.5
Gohir.D04G066400 Gossypium hirsutum HOM05D006983 ORTHO05D008942 1.2e-09 66.6 94 39.4
Gorai.012G075200 Gossypium raimondii HOM05D006983 ORTHO05D008942 1.2e-09 66.6 94 39.4
TPR.G29801 Trifolium pratense HOM05D006983 ORTHO05D008942 1.2e-09 66.6 93 37.6
MD01G1146200 Malus domestica HOM05D006983 ORTHO05D008942 2.0e-09 65.9 83 44.6
Ca_17141_v3 Cicer arietinum L. HOM05D006983 ORTHO05D008942 2.7e-09 65.5 96 36.5
Phvul.001G240100 Phaseolus vulgaris HOM05D006983 ORTHO05D008942 2.7e-09 65.5 81 44.4
Medtr5g081740 Medicago truncatula HOM05D006983 ORTHO05D008942 4.5e-09 64.7 91 44.0
Glyma.02G253900 Glycine max HOM05D006983 ORTHO05D008942 5.9e-09 64.3 93 38.7
Gohir.A05G346200 Gossypium hirsutum HOM05D006983 ORTHO05D008942 5.9e-09 64.3 80 41.2
Sc10g0002160 Simmondsia chinensis HOM05D006983 ORTHO05D008942 5.9e-09 64.3 90 37.8
Atru.chr12.252 Acer truncatum HOM05D006983 ORTHO05D008942 7.7e-09 63.9 87 39.1
Glyma.11G226700 Glycine max HOM05D006983 ORTHO05D008942 7.7e-09 63.9 93 38.7
Glyma.14G062600 Glycine max HOM05D006983 ORTHO05D008942 7.7e-09 63.9 90 41.1
COL.COLO4_25671 Corchorus olitorius HOM05D006983 ORTHO05D008942 1.3e-08 63.2 85 35.3
CiPaw.01G295300 Carya illinoinensis HOM05D006983 ORTHO05D008942 1.7e-08 62.8 93 41.9
Haze_17176 Corylus avellana HOM05D006983 ORTHO05D008942 2.2e-08 62.4 87 41.4
Dinv20949 Davidia involucrata HOM05D006983 ORTHO05D008942 3.8e-08 61.6 86 38.4
Dinv20994 Davidia involucrata HOM05D006983 ORTHO05D008942 3.8e-08 61.6 86 38.4
Ca_05926_v3 Cicer arietinum L. HOM05D006983 ORTHO05D008942 5.0e-08 61.2 93 36.6
Ciclev10033883m.g Citrus clementina HOM05D006983 ORTHO05D008942 5.0e-08 61.2 88 39.8
Cc02_g06970 Coffea canephora HOM05D006983 ORTHO05D008942 5.0e-08 61.2 80 41.2
VMungo0647G1533 Vigna mungo HOM05D006983 ORTHO05D008942 5.0e-08 61.2 95 42.1
vmacro07000 Vaccinium macrocarpon HOM05D006983 ORTHO05D008942 6.5e-08 60.8 86 38.4
VMungo1383G1034 Vigna mungo HOM05D006983 ORTHO05D008942 6.5e-08 60.8 82 40.2
TPR.G40054 Trifolium pratense HOM05D006983 ORTHO05D008942 1.1e-07 60.1 78 42.3
QL08p062549 Quercus lobata HOM05D006983 ORTHO05D008942 1.5e-07 59.7 93 40.9
arahy.Tifrunner.gnm1.ann1.6C4W0P Arachis hypogaea HOM05D006983 ORTHO05D008942 1.9e-07 59.3 93 36.6
Psat2g036160 Pisum sativum HOM05D006983 ORTHO05D008942 2.5e-07 58.9 88 37.5
Rhsim03G0139600 Rhododendron simsii HOM05D006983 ORTHO05D008942 2.5e-07 58.9 86 37.2
Sabra10G0149000 Salix brachista HOM05D006983 ORTHO05D008942 2.5e-07 58.9 90 34.4
arahy.Tifrunner.gnm1.ann1.IY3N90 Arachis hypogaea HOM05D006983 ORTHO05D008942 3.2e-07 58.5 93 36.6
Lalb_Chr10g0104981 Lupinus albus HOM05D006983 ORTHO05D008942 4.2e-07 58.2 92 40.2
Manes.10G018300 Manihot esculenta HOM05D006983 ORTHO05D008942 4.2e-07 58.2 98 36.7
FAN06G2291 Fragaria x ananassa HOM05D006983 ORTHO05D008942 5.5e-07 57.8 94 41.5
THA.LOC104810069 Tarenaya hassleriana HOM05D006983 ORTHO05D008942 5.5e-07 57.8 84 39.3
CSS0012253 Camellia sinensis var. sinensis HOM05D006983 ORTHO05D008942 7.2e-07 57.4 86 36.0
CSS0014435 Camellia sinensis var. sinensis HOM05D006983 ORTHO05D008942 7.2e-07 57.4 86 36.0
FvH4_7g23940 Fragaria vesca HOM05D006983 ORTHO05D008942 7.2e-07 57.4 94 41.5
FAN01G0283 Fragaria x ananassa HOM05D006983 ORTHO05D008942 7.2e-07 57.4 94 41.5
Gorai.011G279300 Gossypium raimondii HOM05D006983 ORTHO05D008942 7.2e-07 57.4 80 36.2
Gohir.A10G228900 Gossypium hirsutum HOM05D006983 ORTHO05D008942 9.4e-07 57.0 80 36.2
Hma1.2p1_0710F.1_g207380 Hydrangea macrophylla HOM05D006983 ORTHO05D008942 9.4e-07 57.0 95 37.9
arahy.Tifrunner.gnm1.ann1.10ZGUJ Arachis hypogaea HOM05D006983 ORTHO05D008942 1.2e-06 56.6 78 39.7
FAN10G1282 Fragaria x ananassa HOM05D006983 ORTHO05D008942 1.2e-06 56.6 88 42.0
RcHm_v2.0_Chr1g0369271 Rosa chinensis HOM05D006983 ORTHO05D008942 1.2e-06 56.6 83 42.2
FAN03G3227 Fragaria x ananassa HOM05D006983 ORTHO05D008942 1.6e-06 56.2 94 41.5
Gohir.D10G242900 Gossypium hirsutum HOM05D006983 ORTHO05D008942 1.6e-06 56.2 80 35.0
TWI73G0069 Tripterygium wilfordii HOM05D006983 ORTHO05D008942 2.1e-06 55.8 80 38.8
arahy.Tifrunner.gnm1.ann1.A3NAV6 Arachis hypogaea HOM05D006983 ORTHO05D008942 2.7e-06 55.5 78 38.5
DCAR_011784 Daucus carota HOM05D003187 ORTHO05D003630 3.6e-06 55.1 88 37.5
Medtr7g092870 Medicago truncatula HOM05D006983 ORTHO05D008942 4.7e-06 54.7 72 44.4
Nn2g15918 Nelumbo nucifera HOM05D006983 ORTHO05D008942 4.7e-06 54.7 83 34.9
Nitab4.5_0000278g0220 Nicotiana tabacum HOM05D006983 ORTHO05D007189 4.7e-06 54.7 80 37.5
Nitab4.5_0012179g0010 Nicotiana tabacum HOM05D006983 ORTHO05D007189 6.1e-06 54.3 80 37.5
Potri.010G193500 Populus trichocarpa HOM05D006983 ORTHO05D008942 8.0e-06 53.9 93 35.5


User provided reference genes

Program Settings