Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 3.5e-33 144.4 77 100.0
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 1.3e-30 136.0 77 94.8
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 1.3e-30 136.0 77 94.8
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 2.8e-30 134.8 77 94.8
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 2.8e-30 134.8 77 94.8
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 1.1e-29 132.9 77 92.2
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 9.0e-29 129.8 77 89.6
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 1.2e-28 129.4 77 90.9
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 5.8e-28 127.1 77 88.3
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 2.2e-27 125.2 77 85.7
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 2.1e-25 118.6 77 80.5
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 6.7e-24 113.6 77 76.6
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 6.3e-22 107.1 66 84.8
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 1.5e-15 85.9 68 58.8
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.5e-15 85.9 71 59.2
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.5e-15 85.9 71 59.2
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 1.9e-15 85.5 69 56.5
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 3.3e-15 84.7 66 65.2
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 3.3e-15 84.7 67 61.2
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 4.3e-15 84.3 66 65.2
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 1.3e-14 82.8 66 65.2
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 1.3e-14 82.8 69 62.3
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 2.2e-14 82.0 79 54.4
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 2.8e-14 81.6 67 61.2
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.8e-14 81.6 78 57.7
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 2.8e-14 81.6 67 59.7
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 3.7e-14 81.3 64 60.9
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 3.7e-14 81.3 67 61.2
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 6.3e-14 80.5 61 67.2
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 8.2e-14 80.1 69 60.9
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 8.2e-14 80.1 66 59.1
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 8.2e-14 80.1 67 58.2
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 8.2e-14 80.1 73 56.2
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 1.8e-13 79.0 67 58.2
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 2.4e-13 78.6 66 62.1
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 2.4e-13 78.6 76 56.6
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 2.4e-13 78.6 66 54.5
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 3.1e-13 78.2 63 60.3
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 3.1e-13 78.2 66 60.6
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 3.1e-13 78.2 66 60.6
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 3.1e-13 78.2 66 60.6
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 4.1e-13 77.8 76 48.7
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 6.9e-13 77.0 67 55.2
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 9.1e-13 76.6 68 58.8
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 9.1e-13 76.6 63 60.3
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 9.1e-13 76.6 70 57.1
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.2e-12 76.3 66 59.1
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 1.2e-12 76.3 64 62.5
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 1.2e-12 76.3 67 59.7
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 1.5e-12 75.9 67 56.7
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 2.6e-12 75.1 64 59.4
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 3.4e-12 74.7 67 56.7
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 4.5e-12 74.3 64 59.4
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 4.5e-12 74.3 63 60.3
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 4.5e-12 74.3 63 60.3
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 5.9e-12 73.9 58 63.8
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 5.9e-12 73.9 60 65.0
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 7.7e-12 73.6 60 65.0
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 7.7e-12 73.6 63 58.7
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 1.3e-11 72.8 72 54.2
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 2.2e-11 72.0 62 58.1
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 3.8e-11 71.2 67 49.3
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 5.0e-11 70.9 66 54.5
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 5.0e-11 70.9 63 58.7
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 5.0e-11 70.9 61 59.0
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 5.0e-11 70.9 59 57.6
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 8.5e-11 70.1 55 60.0
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 8.5e-11 70.1 60 63.3
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 8.5e-11 70.1 67 50.7
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 8.5e-11 70.1 60 58.3
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 8.5e-11 70.1 59 57.6
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 1.1e-10 69.7 59 59.3
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 1.4e-10 69.3 60 58.3
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 1.4e-10 69.3 58 58.6
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 5.5e-10 67.4 60 55.0
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 5.5e-10 67.4 60 56.7
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 5.5e-10 67.4 64 54.7
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 9.4e-10 66.6 57 56.1
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 2.7e-09 65.1 66 51.5
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 4.6e-09 64.3 59 54.2
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 1.4e-08 62.8 56 51.8
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 3.9e-08 61.2 47 57.4
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 8.8e-08 60.1 52 50.0
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 1.5e-07 59.3 54 46.3
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 1.5e-07 59.3 54 50.0
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.4e-07 57.8 57 45.6
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.4e-07 57.8 57 45.6
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 7.4e-07 57.0 50 50.0
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 1.3e-06 56.2 48 50.0
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.2e-06 55.5 47 53.2
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 2.2e-06 55.5 47 53.2
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 3.7e-06 54.7 67 46.3
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 3.7e-06 54.7 59 47.5
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 4.8e-06 54.3 60 45.0
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 6.3e-06 53.9 48 45.8


User provided reference genes

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