Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26781 Brassica carinata HOM05D006836 ORTHO05D008691 1.9e-192 675.6 328 100.0
BcaC06g35865 Brassica carinata HOM05D006836 ORTHO05D008691 3.2e-176 621.7 330 93.6
BolC7t41479H Brassica oleracea HOM05D006836 ORTHO05D008691 3.2e-176 621.7 330 93.6
C07p10290 Brassica napus HOM05D006836 ORTHO05D008691 7.2e-176 620.5 330 93.3
BraA07t28465Z Brassica rapa HOM05D006836 ORTHO05D008691 2.8e-172 608.6 330 92.1
A07p06710 Brassica napus HOM05D006836 ORTHO05D008691 1.1e-168 596.7 330 90.6
Sp3g23200 Schrenkiella parvula HOM05D006836 ORTHO05D008691 2.8e-164 582.0 322 87.3
Thhalv10002607m.g Eutrema salsugineum HOM05D006836 ORTHO05D008691 8.0e-159 563.9 329 85.1
CARHR102220 Cardamine hirsuta HOM05D006836 ORTHO05D008691 7.0e-155 550.8 332 80.7
Carub.0003s2604 Capsella rubella HOM05D006836 ORTHO05D008691 5.2e-150 534.6 331 78.5
AL3G42030 Arabidopsis lyrata HOM05D006836 ORTHO05D008691 6.8e-150 534.3 334 80.8
THA.LOC104808842 Tarenaya hassleriana HOM05D006836 ORTHO05D008691 1.2e-119 433.7 340 66.2
Thecc.01G198300 Theobroma cacao HOM05D006836 ORTHO05D008691 4.3e-112 408.7 337 61.4
AT2G04360 Arabidopsis thaliana HOM05D006836 ORTHO05D008691 9.5e-112 407.5 272 75.7
Gohir.A07G192900 Gossypium hirsutum HOM05D006836 ORTHO05D008691 1.2e-111 407.1 338 60.4
Gohir.D07G199300 Gossypium hirsutum HOM05D006836 ORTHO05D008691 1.2e-111 407.1 335 60.9
Gorai.001G223100 Gossypium raimondii HOM05D006836 ORTHO05D008691 6.2e-111 404.8 338 59.5
Manes.13G060700 Manihot esculenta HOM05D006836 ORTHO05D008691 2.0e-109 399.8 339 59.6
GSVIVG01030118001 Vitis vinifera HOM05D006836 ORTHO05D008691 1.1e-107 394.0 342 57.9
Duzib133G0147 Durio zibethinus HOM05D006836 ORTHO05D008691 1.9e-107 393.3 338 59.2
vmacro12068 Vaccinium macrocarpon HOM05D006836 ORTHO05D008691 3.0e-105 386.0 346 56.9
Rhsim06G0178100 Rhododendron simsii HOM05D006836 ORTHO05D008691 1.1e-104 384.0 346 57.2
RcHm_v2.0_Chr2g0155731 Rosa chinensis HOM05D006836 ORTHO05D008691 1.1e-104 384.0 344 56.1
Lalb_Chr10g0094621 Lupinus albus HOM05D006836 ORTHO05D008691 1.5e-104 383.6 330 56.4
Dinv21313 Davidia involucrata HOM05D006836 ORTHO05D008691 1.9e-104 383.3 331 58.0
Lj6g0007987 Lotus japonicus HOM05D006836 ORTHO05D008691 1.9e-104 383.3 323 59.1
Ciclev10015848m.g Citrus clementina HOM05D006836 ORTHO05D008691 2.5e-104 382.9 333 57.4
CANSAT64G2876 Cannabis sativa HOM05D006836 ORTHO05D008691 3.3e-104 382.5 342 58.2
QL04p067653 Quercus lobata HOM05D006836 ORTHO05D008691 5.6e-104 381.7 352 55.7
Cfa014210 Carpinus fangiana HOM05D006836 ORTHO05D008691 1.6e-103 380.2 367 54.5
CiPaw.03G283000 Carya illinoinensis HOM05D006836 ORTHO05D008691 2.1e-103 379.8 347 54.8
TAR629G0496 Trochodendron aralioides HOM05D006836 ORTHO05D008691 5.2e-102 375.2 337 53.4
TPR.G16170 Trifolium pratense HOM05D006836 ORTHO05D008691 6.8e-102 374.8 310 58.7
Potri.014G169200 Populus trichocarpa HOM05D006836 ORTHO05D008691 1.2e-101 374.0 345 56.2
DCAR_012739 Daucus carota HOM05D006836 ORTHO05D008691 2.6e-101 372.9 333 56.5
Hund15463 Selenicereus undatus HOM05D006836 ORTHO05D008691 4.4e-101 372.1 343 56.0
CSS0020520 Camellia sinensis var. sinensis HOM05D006836 ORTHO05D008691 9.9e-101 370.9 352 54.3
PGR031G1777 Punica granatum HOM05D006836 ORTHO05D008691 2.2e-100 369.8 343 56.0
MD09G1129600 Malus domestica HOM05D006836 ORTHO05D008691 1.1e-99 367.5 332 54.5
arahy.Tifrunner.gnm1.ann1.GSTV0Y Arachis hypogaea HOM05D006836 ORTHO05D008691 2.4e-99 366.3 339 54.9
Solyc07g045300.4 Solanum lycopersicum HOM05D006836 ORTHO05D008691 4.2e-99 365.5 345 55.1
TWI75G1319 Tripterygium wilfordii HOM05D006836 ORTHO05D008691 5.4e-99 365.2 334 55.4
Actinidia09801 Actinidia chinensis HOM05D006836 ORTHO05D008691 7.1e-99 364.8 346 54.0
Ca_16339_v3 Cicer arietinum L. HOM05D006836 ORTHO05D008691 9.3e-99 364.4 327 55.0
MBI14_g24036_MAGBIO Magnolia biondii HOM05D006836 ORTHO05D008691 9.3e-99 364.4 332 54.8
Phvul.L001691 Phaseolus vulgaris HOM05D006836 ORTHO05D008691 9.3e-99 364.4 273 63.0
Eucgr.K01397 Eucalyptus grandis HOM05D006836 ORTHO05D008691 1.6e-98 363.6 286 61.9
arahy.Tifrunner.gnm1.ann1.M09JG2 Arachis hypogaea HOM05D006836 ORTHO05D008691 2.1e-98 363.2 339 54.9
VMungo0647G0281 Vigna mungo HOM05D006836 ORTHO05D008691 2.1e-98 363.2 251 66.5
PSO541G5262 Papaver somniferum HOM05D006836 ORTHO05D008691 4.6e-98 362.1 358 52.2
PSO675G1370 Papaver somniferum HOM05D006836 ORTHO05D008691 1.0e-97 360.9 341 54.0
Aqoxy1G03080 Aquilegia oxysepala HOM05D006836 ORTHO05D008691 2.3e-97 359.8 257 64.2
Haze_12601 Corylus avellana HOM05D006836 ORTHO05D008691 2.3e-97 359.8 397 51.1
Nn1g07540 Nelumbo nucifera HOM05D006836 ORTHO05D008691 2.3e-97 359.8 346 53.8
ClCG02G009110 Citrullus lanatus HOM05D006836 ORTHO05D008691 3.0e-97 359.4 237 68.4
Nitab4.5_0004852g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 3.0e-97 359.4 342 53.8
Glyma.13G010200 Glycine max HOM05D006836 ORTHO05D008691 3.9e-97 359.0 312 58.0
Sopen07g023830 Solanum pennellii HOM05D006836 ORTHO05D008691 5.6e-96 355.1 236 67.8
Psat5g104760 Pisum sativum HOM05D006836 ORTHO05D008691 7.3e-96 354.8 312 55.8
Sed0023251 Sechium edule HOM05D006836 ORTHO05D008691 2.8e-95 352.8 337 53.4
PGSC0003DMG400017381 Solanum tuberosum HOM05D006836 ORTHO05D008691 1.4e-94 350.5 236 66.9
Glyma.20G060000 Glycine max HOM05D006836 ORTHO05D008691 5.3e-94 348.6 252 63.9
Aa31sc202G50 Aethionema arabicum HOM05D006836 ORTHO05D008691 6.9e-94 348.2 285 63.2
EL10Ac9g22661 Beta vulgaris HOM05D006836 ORTHO05D008691 2.0e-93 346.7 342 52.9
Migut.M00056 Erythranthe guttata HOM05D006836 ORTHO05D008691 5.8e-93 345.1 350 54.3
SGA_v2.0_scaffold73G24492 Striga asiatica HOM05D006836 ORTHO05D008691 5.8e-93 345.1 349 51.3
Oeu037218.2 Olea europaea HOM05D000879 ORTHO05D008691 1.3e-92 344.0 226 67.3
COL.COLO4_19642 Corchorus olitorius HOM05D006836 ORTHO05D008691 6.4e-92 341.7 341 54.0
AUR62014994 Chenopodium quinoa HOM05D006836 ORTHO05D008691 1.9e-91 340.1 332 54.5
MSTRG.14912 Avicennia marina HOM05D006836 ORTHO05D008691 4.2e-91 339.0 346 51.4
Os08g0345400 Oryza sativa ssp. japonica HOM05D006836 ORTHO05D008691 9.3e-91 337.8 240 64.6
Medtr3g082680 Medicago truncatula HOM05D006836 ORTHO05D008691 2.7e-90 336.3 231 66.7
Sabra14G0129000 Salix brachista HOM05D006836 ORTHO05D008691 2.7e-90 336.3 426 45.1
Ah.01g002500 Amaranthus hybridus HOM05D006836 ORTHO05D008691 1.0e-89 334.3 339 53.4
Zm00001eb176810 Zea mays HOM05D006836 ORTHO05D008691 1.3e-89 334.0 233 65.2
SEGI_40154 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 3.0e-89 332.8 268 57.8
FvH4_6g40480 Fragaria vesca HOM05D006836 ORTHO05D008691 3.9e-89 332.4 299 53.8
FAN10G4054 Fragaria x ananassa HOM05D006836 ORTHO05D008691 1.1e-86 324.3 364 47.8
FAN14G0130 Fragaria x ananassa HOM05D006836 ORTHO05D008691 1.1e-86 324.3 364 47.8
Nitab4.5_0005354g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 1.4e-86 323.9 348 50.0
ATR0751G245 Amborella trichopoda HOM05D006836 ORTHO05D008691 1.7e-84 317.0 218 66.1
AUR62029127 Chenopodium quinoa HOM05D006836 ORTHO05D008691 1.1e-83 314.3 224 66.5
Cc00_g01020 Coffea canephora HOM05D006836 ORTHO05D008691 7.1e-83 311.6 363 46.6
Lsat_1_v5_gn_7_97361 Lactuca sativa HOM05D006836 ORTHO05D008691 5.1e-81 305.4 335 47.8
Lj8A137G50 Lonicera japonica HOM05D006836 ORTHO05D008691 4.8e-79 298.9 206 68.4
Peaxi162Scf00612g00142 Petunia axillaris HOM05D006836 ORTHO05D008691 8.1e-79 298.1 355 48.5
HanXRQChr11g0329431 Helianthus annuus HOM05D006836 ORTHO05D008691 6.9e-78 295.0 326 47.9
CsaV3_6G009720 Cucumis sativus L. HOM05D006836 ORTHO05D008691 2.9e-76 289.7 195 65.1
Pp3c23_16310 Physcomitrium patens HOM05D006836 ORTHO05D008691 2.3e-73 280.0 225 57.3
unitig_62.g23534 Utricularia gibba HOM05D000211 ORTHO05D002682 3.0e-73 279.6 208 62.0
ECA236G0162 Erigeron canadensis HOM05D006836 ORTHO05D008691 6.7e-73 278.5 199 63.8
Cpa.g.sc136.39 Carica papaya HOM05D006836 ORTHO05D008691 1.6e-71 273.9 346 46.8
CDE10G1136 Ceratophyllum demersum HOM05D006836 ORTHO05D008691 1.1e-70 271.2 174 71.3
Sc21g0000470 Simmondsia chinensis HOM05D006836 ORTHO05D008691 2.9e-68 263.1 273 52.0
AagrBONN_evm.TU.Sc2ySwM_117.1494 Anthoceros agrestis HOM05D006836 ORTHO05D008691 4.6e-66 255.8 234 52.6
MELO3C025942.2 Cucumis melo HOM05D006836 ORTHO05D008691 7.9e-66 255.0 273 49.5
Mapoly0098s0007 Marchantia polymorpha HOM05D006836 ORTHO05D008691 3.0e-65 253.1 221 54.3
SMO270G0068 Selaginella moellendorffii HOM05D006836 ORTHO05D008691 1.5e-64 250.8 224 50.9
Prupe.3G195700 Prunus persica HOM05D006836 ORTHO05D008691 8.2e-63 245.0 246 53.3
FAN02G3194 Fragaria x ananassa HOM05D006836 ORTHO05D008691 2.5e-59 233.4 244 48.0
MD17G1118400 Malus domestica HOM05D006836 ORTHO05D008691 2.5e-59 233.4 229 52.0
MD07G1016400 Malus domestica HOM05D006836 ORTHO05D008691 7.2e-59 231.9 225 52.4
Haze_12612 Corylus avellana HOM05D006836 ORTHO05D008691 1.5e-56 224.2 261 47.5
Cre05.g234750 Chlamydomonas reinhardtii HOM05D006836 ORTHO05D008691 4.4e-48 196.1 242 43.0
CBR_g3513 Chara braunii HOM05D006836 ORTHO05D000407 3.1e-38 163.3 199 40.7
FAN05G5431 Fragaria x ananassa HOM05D006836 ORTHO05D008691 1.2e-34 151.4 110 65.5
FAN09G0369 Fragaria x ananassa HOM05D006836 ORTHO05D008691 2.3e-33 147.1 110 64.5
HPP92_003030 Vanilla planifolia HOM05D006836 ORTHO05D008691 2.0e-32 144.1 198 40.9
SEGI_21977 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 3.4e-32 143.3 122 56.6
HPP92_003031 Vanilla planifolia HOM05D006836 ORTHO05D008691 1.0e-28 131.7 86 68.6
PRCOL_00003549 Prasinoderma coloniale HOM05D006836 ORTHO05D008691 2.0e-21 107.5 170 41.8
MCO08G347 Micromonas commoda HOM05D006836 ORTHO05D008691 1.7e-12 77.8 218 31.7
arahy.Tifrunner.gnm1.ann1.FY93PX Arachis hypogaea HOM05D006836 ORTHO05D000230 1.6e-10 71.2 45 66.7
Haze_12595 Corylus avellana HOM05D006836 ORTHO05D008691 8.0e-10 68.9 49 67.3
Hma1.2p1_0599F.1_g187040 Hydrangea macrophylla HOM05D006836 ORTHO05D008691 1.7e-07 61.2 139 35.3
Oeu037217.1 Olea europaea HOM05D006836 ORTHO05D049434 4.1e-06 56.6 144 30.6
Oeu037216.1 Olea europaea HOM05D006836 ORTHO05D049434 5.4e-06 56.2 144 30.6
Mapoly0098s0053 Marchantia polymorpha HOM05D001007 ORTHO05D008005 7.0e-06 55.8 67 34.3


User provided reference genes

Program Settings