Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 6.4e-260 900.2 450 100.0
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 2.8e-255 884.8 449 98.4
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 8.1e-255 883.2 449 98.2
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 8.1e-255 883.2 449 98.2
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.4e-254 881.7 449 98.0
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 9.0e-254 879.8 449 97.8
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 2.5e-248 861.7 449 95.8
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 5.6e-248 860.5 453 94.9
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 1.9e-243 845.5 455 94.3
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.8e-241 839.0 453 93.6
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 9.7e-240 833.2 453 92.5
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 1.6e-239 832.4 455 92.7
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 5.1e-233 810.8 453 88.7
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.7e-228 795.8 454 87.9
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.8e-222 775.8 453 88.3
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 9.4e-211 736.9 442 82.4
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 9.4e-211 736.9 443 81.7
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.7e-210 735.3 442 82.6
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 5.2e-209 731.1 453 80.1
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 5.2e-209 731.1 442 81.9
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 5.2e-209 731.1 451 80.5
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 5.7e-208 727.6 452 79.6
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 3.7e-207 724.9 443 81.0
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 6.3e-207 724.2 443 80.8
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 6.3e-207 724.2 443 80.8
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 6.3e-207 724.2 443 80.8
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 4.1e-206 721.5 443 80.6
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 5.3e-206 721.1 443 81.3
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.2e-205 719.9 452 78.8
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.5e-205 718.4 443 80.1
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.5e-205 718.0 452 78.1
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 4.5e-205 718.0 442 79.4
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 5.9e-205 717.6 440 80.9
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.0e-204 716.8 452 78.5
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.0e-204 716.8 452 78.1
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.7e-204 716.1 452 78.1
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 2.2e-204 715.7 447 79.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 2.9e-204 715.3 442 79.2
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 3.2e-203 711.8 446 80.0
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.7e-202 708.0 439 78.6
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 8.0e-202 707.2 439 78.1
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.0e-201 706.8 442 79.0
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 6.8e-201 704.1 448 77.5
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 1.2e-200 703.4 441 78.5
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.0e-200 702.6 443 77.9
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 9.8e-200 700.3 451 78.3
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 4.8e-199 698.0 449 77.1
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 8.3e-199 697.2 442 77.4
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.1e-198 696.8 447 77.2
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 1.1e-198 696.8 447 79.2
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.1e-198 694.9 456 75.9
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 7.0e-198 694.1 422 80.3
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.6e-197 693.0 439 77.2
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.5e-197 691.8 450 76.4
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.7e-197 690.6 423 79.9
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.3e-196 689.9 444 77.3
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.9e-196 688.7 423 79.7
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.9e-196 688.7 441 78.0
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.1e-195 686.8 444 77.5
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.5e-195 686.4 452 76.8
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.9e-195 686.0 423 79.7
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.9e-195 686.0 453 74.2
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 2.5e-195 685.6 454 74.9
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 5.5e-195 684.5 440 76.4
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 7.2e-195 684.1 442 78.1
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 2.1e-194 682.6 440 75.9
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 2.8e-194 682.2 443 77.2
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.6e-194 681.8 450 75.6
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.0e-193 680.2 449 76.4
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.0e-193 678.7 456 74.6
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 6.8e-193 677.6 442 75.8
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 6.8e-193 677.6 440 75.5
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 6.8e-193 677.6 440 75.5
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.2e-192 676.8 442 75.3
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.5e-192 676.4 458 74.2
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 9.8e-192 673.7 458 74.9
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.7e-191 672.9 444 74.8
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.8e-191 672.2 444 74.5
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 4.9e-191 671.4 442 76.2
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 4.9e-191 671.4 453 74.2
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.0e-190 667.5 444 74.1
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 7.0e-190 667.5 461 73.1
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 9.2e-190 667.2 458 74.2
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 2.0e-189 666.0 459 73.9
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 2.7e-189 665.6 457 74.8
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 4.5e-189 664.8 451 74.3
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 5.9e-189 664.5 453 72.2
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 2.3e-188 662.5 457 74.4
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 6.6e-188 661.0 450 72.0
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 8.6e-188 660.6 441 75.1
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 2.5e-187 659.1 459 73.4
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 5.6e-187 657.9 422 77.3
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.6e-186 656.4 475 70.7
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 3.6e-186 655.2 457 72.0
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 6.8e-185 651.0 443 73.6
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.2e-184 650.2 438 73.7
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.4e-184 648.7 451 72.1
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 9.8e-184 647.1 450 72.2
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.7e-183 646.4 443 74.9
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.9e-183 645.6 452 71.7
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 4.9e-183 644.8 458 72.1
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 7.0e-182 641.0 563 62.5
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 2.3e-180 636.0 447 69.6
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 5.0e-180 634.8 430 71.4
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.8e-177 626.3 440 71.4
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 5.2e-177 624.8 442 71.5
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 6.4e-175 617.8 450 67.8
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.1e-174 617.1 443 68.6
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 2.4e-174 615.9 483 65.8
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 5.4e-174 614.8 450 67.8
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.5e-173 612.1 381 78.0
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.5e-171 606.7 447 69.1
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 2.5e-171 605.9 465 66.7
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 6.8e-169 597.8 452 65.9
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 2.0e-168 596.3 446 68.2
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.2e-167 592.8 421 69.8
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.7e-164 583.2 429 68.5
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.1e-161 573.9 446 64.1
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.4e-161 572.8 444 64.6
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.1e-158 563.9 359 77.4
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.0e-156 555.8 443 66.6
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 2.2e-151 539.7 361 74.0
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 8.4e-151 537.7 395 70.1
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 3.2e-150 535.8 430 62.3
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 6.4e-143 511.5 432 60.4
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 1.9e-142 510.0 342 71.9
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 9.6e-139 497.7 427 58.8
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.1e-137 494.2 433 60.0
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 7.6e-136 488.0 335 70.7
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.7e-135 486.9 440 57.5
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.0e-132 477.6 435 55.9
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 3.7e-130 469.2 322 73.0
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.3e-123 445.7 394 60.4
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.3e-106 388.7 336 61.0
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.6e-104 383.3 289 64.4
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 2.4e-89 333.6 209 78.5
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.2e-88 331.3 258 65.9
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 2.0e-88 330.5 255 63.9
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 6.5e-87 325.5 208 79.3
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.8e-81 307.4 428 44.2
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 2.0e-75 287.3 197 72.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 3.7e-66 256.5 178 73.0
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.5e-51 208.0 160 68.8
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 6.0e-48 196.1 136 73.5
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 1.2e-43 181.8 152 61.8
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 1.9e-41 174.5 151 62.9
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 6.0e-40 169.5 222 47.7
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 3.9e-23 113.6 61 93.4
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.9e-12 76.3 56 64.3
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 7.4e-06 56.2 88 38.6


User provided reference genes

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